data_6P2R
#
_model_server_result.job_id            Am95QkPsnkY04tu7UjlT3A 
_model_server_result.datetime_utc      '2024-11-04 22:32:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p2r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1003}' 
#
_entry.id    6P2R 
#
_exptl.entry_id    6P2R 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              644.947 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3R)-3,31-dimethyl-7,11,15,19,23,27-hexamethylidenedotriacont-31-en-1-yl dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6P2R 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P2R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 490 B CYS 490 1_555 B SG CYS 511 B CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A ND2 ASN 390 A ASN 390 1_555 C C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 B ND2 ASN 131 B ASN 131 1_555 F C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C40 H69 O4 P' 
_chem_comp.formula_weight    644.947 
_chem_comp.id                NNM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3R)-3,31-dimethyl-7,11,15,19,23,27-hexamethylidenedotriacont-31-en-1-yl dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6P2R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 1001 1001 NAG NAG . 
D 4 CPL A 1 1002 2 CPL CPL . 
E 5 NNM A 1 1003 501 NNM MJC . 
F 3 NAG B 1 1001 1001 NAG NAG . 
G 4 CPL B 1 1002 1 CPL CPL . 
H 4 CPL B 1 1003 3 CPL CPL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 NNM . . . E 5 100.666 118.3 122.627 1 26.07 ? C3 NNM 1003 A 1 
HETATM 2 C C2 NNM . . . E 5 99.443 118.511 121.743 1 26.07 ? C2 NNM 1003 A 1 
HETATM 3 C C5 NNM . . . E 5 100.668 116.857 123.185 1 26.07 ? C5 NNM 1003 A 1 
HETATM 4 C C6 NNM . . . E 5 100.582 115.824 122.027 1 26.07 ? C6 NNM 1003 A 1 
HETATM 5 C C9 NNM . . . E 5 101.079 113.64 120.078 1 26.07 ? C9 NNM 1003 A 1 
HETATM 6 C C8 NNM . . . E 5 102.08 113.982 121.188 1 26.07 ? C8 NNM 1003 A 1 
HETATM 7 C C7 NNM . . . E 5 101.858 114.963 122.056 1 26.07 ? C7 NNM 1003 A 1 
HETATM 8 C C31 NNM . . . E 5 117.309 106.955 126.336 1 26.07 ? C31 NNM 1003 A 1 
HETATM 9 C C12 NNM . . . E 5 104.489 110.979 121.416 1 26.07 ? C12 NNM 1003 A 1 
HETATM 10 C C14 NNM . . . E 5 102.997 109.22 122.434 1 26.07 ? C14 NNM 1003 A 1 
HETATM 11 C C16 NNM . . . E 5 106.647 108.625 121.62 1 26.07 ? C16 NNM 1003 A 1 
HETATM 12 C C17 NNM . . . E 5 107.677 109.683 121.157 1 26.07 ? C17 NNM 1003 A 1 
HETATM 13 C C18 NNM . . . E 5 108.772 110.095 121.825 1 26.07 ? C18 NNM 1003 A 1 
HETATM 14 C C19 NNM . . . E 5 109.689 111.17 121.158 1 26.07 ? C19 NNM 1003 A 1 
HETATM 15 C C20 NNM . . . E 5 109.182 109.557 123.247 1 26.07 ? C20 NNM 1003 A 1 
HETATM 16 C C22 NNM . . . E 5 110.101 107.556 124.468 1 26.07 ? C22 NNM 1003 A 1 
HETATM 17 C C23 NNM . . . E 5 111.192 107.697 125.265 1 26.07 ? C23 NNM 1003 A 1 
HETATM 18 C C28 NNM . . . E 5 115.991 107.961 124.349 1 26.07 ? C28 NNM 1003 A 1 
HETATM 19 C C29 NNM . . . E 5 116.115 108.012 122.814 1 26.07 ? C29 NNM 1003 A 1 
HETATM 20 C C30 NNM . . . E 5 117.291 108.045 125.214 1 26.07 ? C30 NNM 1003 A 1 
HETATM 21 C C11 NNM . . . E 5 103.238 111.718 120.859 1 26.07 ? C11 NNM 1003 A 1 
HETATM 22 O O1' NNM . . . E 5 96.864 121.268 125.233 1 26.07 ? O1' NNM 1003 A 1 
HETATM 23 P P NNM . . . E 5 96.771 120.93 123.594 1 26.07 ? P NNM 1003 A 1 
HETATM 24 O OP NNM . . . E 5 98.211 120.215 123.059 1 26.07 ? OP NNM 1003 A 1 
HETATM 25 O OP2 NNM . . . E 5 95.615 119.998 123.327 1 26.07 ? OP2 NNM 1003 A 1 
HETATM 26 O OP3 NNM . . . E 5 96.542 122.224 122.854 1 26.07 ? OP3 NNM 1003 A 1 
HETATM 27 C C1 NNM . . . E 5 98.179 118.849 122.61 1 26.07 ? C1 NNM 1003 A 1 
HETATM 28 C C4 NNM . . . E 5 101.919 118.546 121.807 1 26.07 ? C4 NNM 1003 A 1 
HETATM 29 C C10 NNM . . . E 5 103.407 113.196 121.313 1 26.07 ? C10 NNM 1003 A 1 
HETATM 30 C C13 NNM . . . E 5 104.378 109.834 122.132 1 26.07 ? C13 NNM 1003 A 1 
HETATM 31 C C15 NNM . . . E 5 105.663 109.14 122.689 1 26.07 ? C15 NNM 1003 A 1 
HETATM 32 C C21 NNM . . . E 5 110.015 108.278 123.082 1 26.07 ? C21 NNM 1003 A 1 
HETATM 33 C C24 NNM . . . E 5 111.225 106.964 126.615 1 26.07 ? C24 NNM 1003 A 1 
HETATM 34 C C25 NNM . . . E 5 112.377 108.587 124.848 1 26.07 ? C25 NNM 1003 A 1 
HETATM 35 C C26 NNM . . . E 5 113.472 107.759 124.128 1 26.07 ? C26 NNM 1003 A 1 
HETATM 36 C C27 NNM . . . E 5 114.788 107.852 124.944 1 26.07 ? C27 NNM 1003 A 1 
HETATM 37 C C32 NNM . . . E 5 116.803 107.583 127.68 1 26.07 ? C32 NNM 1003 A 1 
HETATM 38 C C33 NNM . . . E 5 117.636 107.97 128.663 1 26.07 ? C33 NNM 1003 A 1 
HETATM 39 C C34 NNM . . . E 5 117.023 108.577 129.929 1 26.07 ? C34 NNM 1003 A 1 
HETATM 40 C C35 NNM . . . E 5 119.183 107.836 128.523 1 26.07 ? C35 NNM 1003 A 1 
HETATM 41 C C36 NNM . . . E 5 119.694 106.552 129.216 1 26.07 ? C36 NNM 1003 A 1 
HETATM 42 C C37 NNM . . . E 5 121.127 106.235 128.667 1 26.07 ? C37 NNM 1003 A 1 
HETATM 43 C C38 NNM . . . E 5 121.306 105.248 127.738 1 26.07 ? C38 NNM 1003 A 1 
HETATM 44 C C39 NNM . . . E 5 120.109 104.431 127.206 1 26.07 ? C39 NNM 1003 A 1 
HETATM 45 C C40 NNM . . . E 5 122.738 104.941 127.195 1 26.07 ? C40 NNM 1003 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           45 
#