data_6P35 # _model_server_result.job_id PWtcLBjC72G0FOGZxxOl0A _model_server_result.datetime_utc '2024-12-04 19:29:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6P35 # _exptl.entry_id 6P35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.17 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(diaminomethylidene)amino]-2-oxopentanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6P35 _cell.length_a 158.578 _cell.length_b 158.578 _cell.length_c 98.285 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,3 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_554 -x+y,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -49.1425 3 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.289 137.332576 -16.380833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 303 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 303 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 303 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 303 _struct_conn.ptnr2_symmetry 11_554 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H11 N3 O3' _chem_comp.formula_weight 173.17 _chem_comp.id NWG _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(diaminomethylidene)amino]-2-oxopentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C09 NWG sing 330 n n C09 N08 NWG doub 331 n n C09 N10 NWG sing 332 n n N08 C07 NWG sing 333 n n C06 C07 NWG sing 334 n n C06 C05 NWG sing 335 n n O04 C02 NWG doub 336 n n C05 C01 NWG sing 337 n n C02 C01 NWG sing 338 n n C02 O03 NWG sing 339 n n C01 O12 NWG doub 340 n n C05 H1 NWG sing 341 n n C05 H2 NWG sing 342 n n C06 H3 NWG sing 343 n n C06 H4 NWG sing 344 n n C07 H5 NWG sing 345 n n N10 H6 NWG sing 346 n n N10 H7 NWG sing 347 n n N11 H8 NWG sing 348 n n O03 H9 NWG sing 349 n n C07 H10 NWG sing 350 n n N11 H11 NWG sing 351 n n # _atom_sites.entry_id 6P35 _atom_sites.fract_transf_matrix[1][1] 0.006306 _atom_sites.fract_transf_matrix[1][2] 0.003641 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NWG A 1 401 401 NWG 2KA . C 3 GOL A 1 402 501 GOL GOL . D 3 GOL A 1 403 601 GOL GOL . E 2 NWG A 1 404 701 NWG 2KA . F 4 NAP A 1 405 1 NAP NAP . G 5 SO4 A 1 406 1 SO4 SO4 . H 5 SO4 A 1 407 2 SO4 SO4 . I 5 SO4 A 1 408 3 SO4 SO4 . J 6 HOH A 1 501 104 HOH HOH . J 6 HOH A 2 502 116 HOH HOH . J 6 HOH A 3 503 112 HOH HOH . J 6 HOH A 4 504 89 HOH HOH . J 6 HOH A 5 505 64 HOH HOH . J 6 HOH A 6 506 16 HOH HOH . J 6 HOH A 7 507 91 HOH HOH . J 6 HOH A 8 508 31 HOH HOH . J 6 HOH A 9 509 53 HOH HOH . J 6 HOH A 10 510 50 HOH HOH . J 6 HOH A 11 511 78 HOH HOH . J 6 HOH A 12 512 86 HOH HOH . J 6 HOH A 13 513 69 HOH HOH . J 6 HOH A 14 514 14 HOH HOH . J 6 HOH A 15 515 9 HOH HOH . J 6 HOH A 16 516 11 HOH HOH . J 6 HOH A 17 517 95 HOH HOH . J 6 HOH A 18 518 111 HOH HOH . J 6 HOH A 19 519 40 HOH HOH . J 6 HOH A 20 520 107 HOH HOH . J 6 HOH A 21 521 97 HOH HOH . J 6 HOH A 22 522 7 HOH HOH . J 6 HOH A 23 523 33 HOH HOH . J 6 HOH A 24 524 39 HOH HOH . J 6 HOH A 25 525 35 HOH HOH . J 6 HOH A 26 526 92 HOH HOH . J 6 HOH A 27 527 10 HOH HOH . J 6 HOH A 28 528 36 HOH HOH . J 6 HOH A 29 529 87 HOH HOH . J 6 HOH A 30 530 32 HOH HOH . J 6 HOH A 31 531 6 HOH HOH . J 6 HOH A 32 532 38 HOH HOH . J 6 HOH A 33 533 49 HOH HOH . J 6 HOH A 34 534 51 HOH HOH . J 6 HOH A 35 535 24 HOH HOH . J 6 HOH A 36 536 76 HOH HOH . J 6 HOH A 37 537 56 HOH HOH . J 6 HOH A 38 538 110 HOH HOH . J 6 HOH A 39 539 94 HOH HOH . J 6 HOH A 40 540 3 HOH HOH . J 6 HOH A 41 541 123 HOH HOH . J 6 HOH A 42 542 4 HOH HOH . J 6 HOH A 43 543 55 HOH HOH . J 6 HOH A 44 544 54 HOH HOH . J 6 HOH A 45 545 44 HOH HOH . J 6 HOH A 46 546 41 HOH HOH . J 6 HOH A 47 547 13 HOH HOH . J 6 HOH A 48 548 121 HOH HOH . J 6 HOH A 49 549 37 HOH HOH . J 6 HOH A 50 550 2 HOH HOH . J 6 HOH A 51 551 48 HOH HOH . J 6 HOH A 52 552 5 HOH HOH . J 6 HOH A 53 553 45 HOH HOH . J 6 HOH A 54 554 61 HOH HOH . J 6 HOH A 55 555 25 HOH HOH . J 6 HOH A 56 556 21 HOH HOH . J 6 HOH A 57 557 1 HOH HOH . J 6 HOH A 58 558 75 HOH HOH . J 6 HOH A 59 559 117 HOH HOH . J 6 HOH A 60 560 12 HOH HOH . J 6 HOH A 61 561 73 HOH HOH . J 6 HOH A 62 562 29 HOH HOH . J 6 HOH A 63 563 106 HOH HOH . J 6 HOH A 64 564 90 HOH HOH . J 6 HOH A 65 565 30 HOH HOH . J 6 HOH A 66 566 22 HOH HOH . J 6 HOH A 67 567 8 HOH HOH . J 6 HOH A 68 568 72 HOH HOH . J 6 HOH A 69 569 77 HOH HOH . J 6 HOH A 70 570 15 HOH HOH . J 6 HOH A 71 571 18 HOH HOH . J 6 HOH A 72 572 42 HOH HOH . J 6 HOH A 73 573 114 HOH HOH . J 6 HOH A 74 574 63 HOH HOH . J 6 HOH A 75 575 59 HOH HOH . J 6 HOH A 76 576 27 HOH HOH . J 6 HOH A 77 577 17 HOH HOH . J 6 HOH A 78 578 23 HOH HOH . J 6 HOH A 79 579 57 HOH HOH . J 6 HOH A 80 580 88 HOH HOH . J 6 HOH A 81 581 47 HOH HOH . J 6 HOH A 82 582 98 HOH HOH . J 6 HOH A 83 583 19 HOH HOH . J 6 HOH A 84 584 34 HOH HOH . J 6 HOH A 85 585 26 HOH HOH . J 6 HOH A 86 586 83 HOH HOH . J 6 HOH A 87 587 102 HOH HOH . J 6 HOH A 88 588 66 HOH HOH . J 6 HOH A 89 589 122 HOH HOH . J 6 HOH A 90 590 115 HOH HOH . J 6 HOH A 91 591 101 HOH HOH . J 6 HOH A 92 592 20 HOH HOH . J 6 HOH A 93 593 71 HOH HOH . J 6 HOH A 94 594 105 HOH HOH . J 6 HOH A 95 595 96 HOH HOH . J 6 HOH A 96 596 68 HOH HOH . J 6 HOH A 97 597 82 HOH HOH . J 6 HOH A 98 598 84 HOH HOH . J 6 HOH A 99 599 85 HOH HOH . J 6 HOH A 100 600 74 HOH HOH . J 6 HOH A 101 601 28 HOH HOH . J 6 HOH A 102 602 43 HOH HOH . J 6 HOH A 103 603 99 HOH HOH . J 6 HOH A 104 604 67 HOH HOH . J 6 HOH A 105 605 124 HOH HOH . J 6 HOH A 106 606 108 HOH HOH . J 6 HOH A 107 607 46 HOH HOH . J 6 HOH A 108 608 119 HOH HOH . J 6 HOH A 109 609 65 HOH HOH . J 6 HOH A 110 610 52 HOH HOH . J 6 HOH A 111 611 62 HOH HOH . J 6 HOH A 112 612 109 HOH HOH . J 6 HOH A 113 613 118 HOH HOH . J 6 HOH A 114 614 58 HOH HOH . J 6 HOH A 115 615 81 HOH HOH . J 6 HOH A 116 616 79 HOH HOH . J 6 HOH A 117 617 93 HOH HOH . J 6 HOH A 118 618 80 HOH HOH . J 6 HOH A 119 619 100 HOH HOH . J 6 HOH A 120 620 113 HOH HOH . J 6 HOH A 121 621 60 HOH HOH . J 6 HOH A 122 622 103 HOH HOH . J 6 HOH A 123 623 70 HOH HOH . J 6 HOH A 124 624 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 NWG . . . B 2 -21.649 64.4 -25.357 1 53.54 ? C01 NWG 401 A 1 HETATM 2 C C02 NWG . . . B 2 -20.21 64.482 -25.892 1 60.24 ? C02 NWG 401 A 1 HETATM 3 C C05 NWG . . . B 2 -22.813 65.145 -26.12 1 42.6 ? C05 NWG 401 A 1 HETATM 4 C C06 NWG . . . B 2 -23.252 64.272 -27.361 1 43.83 ? C06 NWG 401 A 1 HETATM 5 C C07 NWG . . . B 2 -23.212 62.732 -27.337 1 61.96 ? C07 NWG 401 A 1 HETATM 6 C C09 NWG . . . B 2 -24.015 60.55 -28.687 1 66.63 ? C09 NWG 401 A 1 HETATM 7 N N08 NWG . . . B 2 -24.038 61.985 -28.331 1 84.25 ? N08 NWG 401 A 1 HETATM 8 N N10 NWG . . . B 2 -23.2 59.681 -28.106 1 62.5 ? N10 NWG 401 A 1 HETATM 9 N N11 NWG . . . B 2 -24.901 60.057 -29.716 1 30.18 ? N11 NWG 401 A 1 HETATM 10 O O03 NWG . . . B 2 -19.38 63.737 -25.308 1 52.24 -1 O03 NWG 401 A 1 HETATM 11 O O04 NWG . . . B 2 -19.922 65.264 -26.858 1 61.58 ? O04 NWG 401 A 1 HETATM 12 O O12 NWG . . . B 2 -21.752 63.67 -24.363 1 41.98 ? O12 NWG 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 12 #