data_6P38 # _model_server_result.job_id -D_L8xD44DONpUzacNDT8A _model_server_result.datetime_utc '2024-11-04 20:20:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 6P38 # _exptl.entry_id 6P38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 534.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(3R)-4-cyclopentyl-1,3-dimethyl-2-oxo-1,2,3,4-tetrahydropyrido[2,3-b]pyrazin-6-yl]amino}-N-(1-methylpiperidin-4-yl)-3-[(propan-2-yl)oxy]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6P38 _cell.length_a 95.89 _cell.length_b 95.89 _cell.length_c 94.22 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H42 N6 O3' _chem_comp.formula_weight 534.693 _chem_comp.id NQV _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(3R)-4-cyclopentyl-1,3-dimethyl-2-oxo-1,2,3,4-tetrahydropyrido[2,3-b]pyrazin-6-yl]amino}-N-(1-methylpiperidin-4-yl)-3-[(propan-2-yl)oxy]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C27 NQV sing 235 n n C26 C25 NQV sing 236 n n C27 C28 NQV sing 237 n n C25 C24 NQV sing 238 n n C28 C24 NQV sing 239 n n C24 N6 NQV sing 240 n n C30 C29 NQV sing 241 n n C29 N6 NQV sing 242 n n C29 C1 NQV sing 243 n n N6 C23 NQV sing 244 n n C22 C20 NQV sing 245 n n O1 C1 NQV doub 246 n n C1 N1 NQV sing 247 n n N5 C23 NQV doub 248 n y N5 C6 NQV sing 249 n y C23 C3 NQV sing 250 n y C20 O3 NQV sing 251 n n C20 C21 NQV sing 252 n n O3 C19 NQV sing 253 n n N2 C6 NQV sing 254 n n N2 C7 NQV sing 255 n n N1 C3 NQV sing 256 n n N1 C2 NQV sing 257 n n C6 C5 NQV doub 258 n y C3 C4 NQV doub 259 n y C19 C7 NQV doub 260 n y C19 C18 NQV sing 261 n y C7 C8 NQV sing 262 n y C5 C4 NQV sing 263 n y C18 C10 NQV doub 264 n y C8 C9 NQV doub 265 n y C10 C9 NQV sing 266 n y C10 C11 NQV sing 267 n n O2 C11 NQV doub 268 n n C11 N3 NQV sing 269 n n N3 C12 NQV sing 270 n n C17 C12 NQV sing 271 n n C17 C16 NQV sing 272 n n C12 C13 NQV sing 273 n n C16 N4 NQV sing 274 n n C13 C14 NQV sing 275 n n N4 C14 NQV sing 276 n n N4 C15 NQV sing 277 n n C4 H1 NQV sing 278 n n C14 H2 NQV sing 279 n n C14 H3 NQV sing 280 n n C5 H4 NQV sing 281 n n C8 H5 NQV sing 282 n n C9 H6 NQV sing 283 n n C12 H7 NQV sing 284 n n C13 H8 NQV sing 285 n n C13 H9 NQV sing 286 n n N2 H10 NQV sing 287 n n N3 H11 NQV sing 288 n n C15 H12 NQV sing 289 n n C15 H13 NQV sing 290 n n C15 H14 NQV sing 291 n n C16 H15 NQV sing 292 n n C16 H16 NQV sing 293 n n C17 H17 NQV sing 294 n n C17 H18 NQV sing 295 n n C18 H19 NQV sing 296 n n C2 H20 NQV sing 297 n n C2 H21 NQV sing 298 n n C2 H22 NQV sing 299 n n C20 H23 NQV sing 300 n n C21 H24 NQV sing 301 n n C21 H25 NQV sing 302 n n C21 H26 NQV sing 303 n n C22 H27 NQV sing 304 n n C22 H28 NQV sing 305 n n C22 H29 NQV sing 306 n n C24 H30 NQV sing 307 n n C25 H31 NQV sing 308 n n C25 H32 NQV sing 309 n n C26 H33 NQV sing 310 n n C26 H34 NQV sing 311 n n C27 H35 NQV sing 312 n n C27 H36 NQV sing 313 n n C28 H37 NQV sing 314 n n C28 H38 NQV sing 315 n n C29 H39 NQV sing 316 n n C30 H40 NQV sing 317 n n C30 H41 NQV sing 318 n n C30 H42 NQV sing 319 n n # _atom_sites.entry_id 6P38 _atom_sites.fract_transf_matrix[1][1] 0.010429 _atom_sites.fract_transf_matrix[1][2] 0.006021 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NQV _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 4000 _pdbx_nonpoly_scheme.auth_seq_num 4000 _pdbx_nonpoly_scheme.pdb_mon_id NQV _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 NQV . . . B 2 -54.869 28.278 -39 1 100.62 ? C4 NQV 4000 A 1 HETATM 2 C C14 NQV . . . B 2 -56.107 38.637 -32.999 1 171.22 ? C14 NQV 4000 A 1 HETATM 3 C C5 NQV . . . B 2 -54.732 29.651 -39.008 1 101.18 ? C5 NQV 4000 A 1 HETATM 4 C C6 NQV . . . B 2 -54.335 30.285 -40.217 1 107.68 ? C6 NQV 4000 A 1 HETATM 5 C C11 NQV . . . B 2 -54.447 36.233 -36.966 1 134.02 ? C11 NQV 4000 A 1 HETATM 6 C C7 NQV . . . B 2 -54.322 32.742 -39.44 1 108.67 ? C7 NQV 4000 A 1 HETATM 7 C C8 NQV . . . B 2 -55.313 32.813 -38.446 1 106.89 ? C8 NQV 4000 A 1 HETATM 8 C C9 NQV . . . B 2 -55.402 33.928 -37.632 1 107.82 ? C9 NQV 4000 A 1 HETATM 9 C C10 NQV . . . B 2 -54.501 34.975 -37.781 1 115.83 ? C10 NQV 4000 A 1 HETATM 10 C C12 NQV . . . B 2 -55.276 37.543 -35.064 1 160.48 ? C12 NQV 4000 A 1 HETATM 11 C C13 NQV . . . B 2 -56.207 37.395 -33.872 1 165.66 ? C13 NQV 4000 A 1 HETATM 12 N N1 NQV . . . B 2 -54.747 26.132 -40.221 1 93.04 ? N1 NQV 4000 A 1 HETATM 13 N N2 NQV . . . B 2 -54.143 31.654 -40.338 1 107.98 ? N2 NQV 4000 A 1 HETATM 14 C C3 NQV . . . B 2 -54.623 27.549 -40.164 1 102.25 ? C3 NQV 4000 A 1 HETATM 15 N N3 NQV . . . B 2 -55.304 36.358 -35.928 1 145.48 ? N3 NQV 4000 A 1 HETATM 16 C C1 NQV . . . B 2 -54.823 25.453 -41.404 1 96.69 ? C1 NQV 4000 A 1 HETATM 17 C C15 NQV . . . B 2 -56.326 41.041 -32.87 1 173.14 ? C15 NQV 4000 A 1 HETATM 18 C C16 NQV . . . B 2 -55.607 40.034 -34.939 1 177.05 ? C16 NQV 4000 A 1 HETATM 19 C C17 NQV . . . B 2 -55.647 38.802 -35.837 1 169.48 ? C17 NQV 4000 A 1 HETATM 20 C C18 NQV . . . B 2 -53.518 34.893 -38.76 1 113.63 ? C18 NQV 4000 A 1 HETATM 21 C C19 NQV . . . B 2 -53.408 33.799 -39.588 1 113.83 ? C19 NQV 4000 A 1 HETATM 22 C C2 NQV . . . B 2 -54.811 25.347 -38.987 1 81.63 ? C2 NQV 4000 A 1 HETATM 23 C C20 NQV . . . B 2 -51.59 34.726 -41.11 1 123.78 ? C20 NQV 4000 A 1 HETATM 24 C C21 NQV . . . B 2 -50.833 35.604 -40.137 1 128.92 ? C21 NQV 4000 A 1 HETATM 25 C C22 NQV . . . B 2 -50.635 33.992 -42.02 1 120.87 ? C22 NQV 4000 A 1 HETATM 26 C C23 NQV . . . B 2 -54.236 28.235 -41.319 1 110.63 ? C23 NQV 4000 A 1 HETATM 27 C C24 NQV . . . B 2 -52.889 27.775 -43.49 1 127.09 ? C24 NQV 4000 A 1 HETATM 28 C C25 NQV . . . B 2 -53.016 26.868 -44.725 1 128.95 ? C25 NQV 4000 A 1 HETATM 29 C C26 NQV . . . B 2 -53.636 27.706 -45.832 1 125.3 ? C26 NQV 4000 A 1 HETATM 30 C C27 NQV . . . B 2 -54.099 28.959 -45.157 1 122.79 ? C27 NQV 4000 A 1 HETATM 31 C C28 NQV . . . B 2 -53.005 29.16 -44.134 1 128.41 ? C28 NQV 4000 A 1 HETATM 32 C C29 NQV . . . B 2 -54.845 26.316 -42.644 1 108.33 ? C29 NQV 4000 A 1 HETATM 33 C C30 NQV . . . B 2 -56.264 26.762 -42.943 1 108.68 ? C30 NQV 4000 A 1 HETATM 34 N N4 NQV . . . B 2 -56.445 39.862 -33.742 1 173.96 ? N4 NQV 4000 A 1 HETATM 35 N N5 NQV . . . B 2 -54.087 29.579 -41.324 1 113.14 ? N5 NQV 4000 A 1 HETATM 36 N N6 NQV . . . B 2 -53.971 27.49 -42.474 1 115.04 ? N6 NQV 4000 A 1 HETATM 37 O O1 NQV . . . B 2 -54.902 24.228 -41.462 1 91.22 ? O1 NQV 4000 A 1 HETATM 38 O O2 NQV . . . B 2 -53.616 37.11 -37.235 1 136.24 ? O2 NQV 4000 A 1 HETATM 39 O O3 NQV . . . B 2 -52.443 33.67 -40.559 1 120.37 ? O3 NQV 4000 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #