data_6P3A # _model_server_result.job_id zGM8WmFSS0vk-XtewTGWoQ _model_server_result.datetime_utc '2024-12-22 06:24:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4000}' # _entry.id 6P3A # _exptl.entry_id 6P3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 562.703 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(3R)-1-(but-3-en-1-yl)-3-methyl-4-(oxan-4-yl)-2-oxo-1,2,3,4-tetrahydropyrido[2,3-b]pyrazin-6-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P3A _cell.length_a 92.43 _cell.length_b 92.43 _cell.length_c 117.43 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 121 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 1640 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 121 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 1640 _struct_conn.ptnr2_symmetry 5_445 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.073 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C31 H42 N6 O4' _chem_comp.formula_weight 562.703 _chem_comp.id NQP _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(3R)-1-(but-3-en-1-yl)-3-methyl-4-(oxan-4-yl)-2-oxo-1,2,3,4-tetrahydropyrido[2,3-b]pyrazin-6-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 N4 NQP sing 237 n n O4 C28 NQP sing 238 n n O4 C27 NQP sing 239 n n C28 C29 NQP sing 240 n n C19 N4 NQP sing 241 n n C19 C20 NQP sing 242 n n C27 C26 NQP sing 243 n n N4 C17 NQP sing 244 n n C17 C16 NQP sing 245 n n C20 C15 NQP sing 246 n n C29 C25 NQP sing 247 n n C15 C16 NQP sing 248 n n C15 N3 NQP sing 249 n n C26 C25 NQP sing 250 n n O2 C14 NQP doub 251 n n C25 N6 NQP sing 252 n n C14 N3 NQP sing 253 n n C14 C13 NQP sing 254 n n C12 C13 NQP doub 255 n y C12 C11 NQP sing 256 n y C30 N6 NQP sing 257 n n C30 C31 NQP sing 258 n n C30 C1 NQP sing 259 n n N6 C24 NQP sing 260 n n C13 C21 NQP sing 261 n y C11 C10 NQP doub 262 n y O1 C1 NQP doub 263 n n C1 N1 NQP sing 264 n n C24 N5 NQP doub 265 n y C24 C6 NQP sing 266 n y C21 C22 NQP doub 267 n y N5 C9 NQP sing 268 n y C10 C22 NQP sing 269 n y C10 N2 NQP sing 270 n n C22 O3 NQP sing 271 n n N1 C6 NQP sing 272 n n N1 C2 NQP sing 273 n n C6 C7 NQP doub 274 n y C9 N2 NQP sing 275 n n C9 C8 NQP doub 276 n y O3 C23 NQP sing 277 n n C2 C3 NQP sing 278 n n C7 C8 NQP sing 279 n y C3 C4 NQP sing 280 n n C4 C5 NQP doub 281 n n C4 H1 NQP sing 282 n n C5 H2 NQP sing 283 n n C5 H3 NQP sing 284 n n C11 H4 NQP sing 285 n n C7 H5 NQP sing 286 n n C8 H6 NQP sing 287 n n C12 H7 NQP sing 288 n n N2 H8 NQP sing 289 n n C3 H9 NQP sing 290 n n C3 H10 NQP sing 291 n n N3 H11 NQP sing 292 n n C15 H12 NQP sing 293 n n C16 H13 NQP sing 294 n n C16 H14 NQP sing 295 n n C17 H15 NQP sing 296 n n C17 H16 NQP sing 297 n n C18 H17 NQP sing 298 n n C18 H18 NQP sing 299 n n C18 H19 NQP sing 300 n n C19 H20 NQP sing 301 n n C19 H21 NQP sing 302 n n C2 H22 NQP sing 303 n n C2 H23 NQP sing 304 n n C20 H24 NQP sing 305 n n C20 H25 NQP sing 306 n n C21 H26 NQP sing 307 n n C23 H27 NQP sing 308 n n C23 H28 NQP sing 309 n n C23 H29 NQP sing 310 n n C25 H30 NQP sing 311 n n C26 H31 NQP sing 312 n n C26 H32 NQP sing 313 n n C27 H33 NQP sing 314 n n C27 H34 NQP sing 315 n n C28 H35 NQP sing 316 n n C28 H36 NQP sing 317 n n C29 H37 NQP sing 318 n n C29 H38 NQP sing 319 n n C30 H39 NQP sing 320 n n C31 H40 NQP sing 321 n n C31 H41 NQP sing 322 n n C31 H42 NQP sing 323 n n # _atom_sites.entry_id 6P3A _atom_sites.fract_transf_matrix[1][1] 0.010819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NQP A 1 4000 4000 NQP DRG . D 2 NQP B 1 4000 4000 NQP DRG . E 3 HOH A 1 4101 1 HOH HOH . E 3 HOH A 2 4102 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 NQP . . . C 2 -50.556 -14.275 1.843 1 96.18 ? C4 NQP 4000 A 1 HETATM 2 C C14 NQP . . . C 2 -54.889 -2.973 -4.121 1 98.34 ? C14 NQP 4000 A 1 HETATM 3 C C5 NQP . . . C 2 -50.731 -15.354 2.539 1 95.04 ? C5 NQP 4000 A 1 HETATM 4 C C6 NQP . . . C 2 -52.416 -11.019 -1.032 1 91.94 ? C6 NQP 4000 A 1 HETATM 5 C C11 NQP . . . C 2 -53.876 -6.332 -2.763 1 76.56 ? C11 NQP 4000 A 1 HETATM 6 C C7 NQP . . . C 2 -52.586 -10.398 0.202 1 84.92 ? C7 NQP 4000 A 1 HETATM 7 C C8 NQP . . . C 2 -53.341 -9.255 0.284 1 89.95 ? C8 NQP 4000 A 1 HETATM 8 C C9 NQP . . . C 2 -53.889 -8.718 -0.91 1 86.16 ? C9 NQP 4000 A 1 HETATM 9 C C10 NQP . . . C 2 -54.705 -6.448 -1.648 1 104.08 ? C10 NQP 4000 A 1 HETATM 10 C C12 NQP . . . C 2 -53.944 -5.199 -3.545 1 67.39 ? C12 NQP 4000 A 1 HETATM 11 C C13 NQP . . . C 2 -54.844 -4.185 -3.245 1 82.79 ? C13 NQP 4000 A 1 HETATM 12 N N1 NQP . . . C 2 -51.643 -12.2 -1.17 1 90.74 ? N1 NQP 4000 A 1 HETATM 13 N N2 NQP . . . C 2 -54.669 -7.589 -0.818 1 90.22 ? N2 NQP 4000 A 1 HETATM 14 C C3 NQP . . . C 2 -51.392 -13.833 0.684 1 103.56 ? C3 NQP 4000 A 1 HETATM 15 N N3 NQP . . . C 2 -55.956 -2.172 -4 1 99.34 ? N3 NQP 4000 A 1 HETATM 16 C C1 NQP . . . C 2 -51.631 -12.922 -2.329 1 84.23 ? C1 NQP 4000 A 1 HETATM 17 C C15 NQP . . . C 2 -56.352 -1.235 -5.054 1 92.63 ? C15 NQP 4000 A 1 HETATM 18 C C16 NQP . . . C 2 -56.129 0.206 -4.62 1 90.58 ? C16 NQP 4000 A 1 HETATM 19 C C17 NQP . . . C 2 -56.588 1.16 -5.707 1 80.77 ? C17 NQP 4000 A 1 HETATM 20 C C18 NQP . . . C 2 -58.423 1.892 -7.083 1 91.25 ? C18 NQP 4000 A 1 HETATM 21 C C19 NQP . . . C 2 -58.215 -0.436 -6.509 1 88.28 ? C19 NQP 4000 A 1 HETATM 22 C C2 NQP . . . C 2 -50.785 -12.649 -0.046 1 106.15 ? C2 NQP 4000 A 1 HETATM 23 C C20 NQP . . . C 2 -57.807 -1.441 -5.448 1 96.76 ? C20 NQP 4000 A 1 HETATM 24 C C21 NQP . . . C 2 -55.677 -4.311 -2.136 1 98.57 ? C21 NQP 4000 A 1 HETATM 25 C C22 NQP . . . C 2 -55.617 -5.431 -1.336 1 113.05 ? C22 NQP 4000 A 1 HETATM 26 C C23 NQP . . . C 2 -57.405 -4.635 0.041 1 106.23 ? C23 NQP 4000 A 1 HETATM 27 C C24 NQP . . . C 2 -53.021 -10.44 -2.178 1 92.22 ? C24 NQP 4000 A 1 HETATM 28 C C25 NQP . . . C 2 -53.121 -10.481 -4.764 1 90.79 ? C25 NQP 4000 A 1 HETATM 29 C C26 NQP . . . C 2 -54.571 -10.104 -5.047 1 86.92 ? C26 NQP 4000 A 1 HETATM 30 C C27 NQP . . . C 2 -54.705 -9.59 -6.459 1 84.23 ? C27 NQP 4000 A 1 HETATM 31 C C28 NQP . . . C 2 -52.459 -8.897 -6.553 1 94.32 ? C28 NQP 4000 A 1 HETATM 32 C C29 NQP . . . C 2 -52.17 -9.355 -5.145 1 102.47 ? C29 NQP 4000 A 1 HETATM 33 C C30 NQP . . . C 2 -52.598 -12.509 -3.418 1 74.21 ? C30 NQP 4000 A 1 HETATM 34 C C31 NQP . . . C 2 -53.894 -13.284 -3.285 1 67.38 ? C31 NQP 4000 A 1 HETATM 35 N N4 NQP . . . C 2 -58 0.941 -6.046 1 89.95 ? N4 NQP 4000 A 1 HETATM 36 N N5 NQP . . . C 2 -53.767 -9.321 -2.086 1 90.76 ? N5 NQP 4000 A 1 HETATM 37 N N6 NQP . . . C 2 -52.895 -11.069 -3.411 1 79.45 ? N6 NQP 4000 A 1 HETATM 38 O O1 NQP . . . C 2 -50.915 -13.908 -2.467 1 88.28 ? O1 NQP 4000 A 1 HETATM 39 O O2 NQP . . . C 2 -53.98 -2.734 -4.915 1 107.41 ? O2 NQP 4000 A 1 HETATM 40 O O3 NQP . . . C 2 -56.412 -5.617 -0.239 1 113.37 ? O3 NQP 4000 A 1 HETATM 41 O O4 NQP . . . C 2 -53.82 -8.499 -6.692 1 97.53 ? O4 NQP 4000 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #