data_6P3A
#
_model_server_result.job_id            elIMpaumAKdE5_zupDLIhg 
_model_server_result.datetime_utc      '2024-12-22 06:06:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p3a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":4000}' 
#
_entry.id    6P3A 
#
_exptl.entry_id    6P3A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              562.703 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-{[(3R)-1-(but-3-en-1-yl)-3-methyl-4-(oxan-4-yl)-2-oxo-1,2,3,4-tetrahydropyrido[2,3-b]pyrazin-6-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6P3A 
_cell.length_a            92.43 
_cell.length_b            92.43 
_cell.length_c            117.43 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P3A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             121 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              1640 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             121 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              1640 
_struct_conn.ptnr2_symmetry                 5_445 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.073 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C31 H42 N6 O4' 
_chem_comp.formula_weight    562.703 
_chem_comp.id                NQP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-{[(3R)-1-(but-3-en-1-yl)-3-methyl-4-(oxan-4-yl)-2-oxo-1,2,3,4-tetrahydropyrido[2,3-b]pyrazin-6-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 N4 NQP sing 237 n n 
O4 C28 NQP sing 238 n n 
O4 C27 NQP sing 239 n n 
C28 C29 NQP sing 240 n n 
C19 N4 NQP sing 241 n n 
C19 C20 NQP sing 242 n n 
C27 C26 NQP sing 243 n n 
N4 C17 NQP sing 244 n n 
C17 C16 NQP sing 245 n n 
C20 C15 NQP sing 246 n n 
C29 C25 NQP sing 247 n n 
C15 C16 NQP sing 248 n n 
C15 N3 NQP sing 249 n n 
C26 C25 NQP sing 250 n n 
O2 C14 NQP doub 251 n n 
C25 N6 NQP sing 252 n n 
C14 N3 NQP sing 253 n n 
C14 C13 NQP sing 254 n n 
C12 C13 NQP doub 255 n y 
C12 C11 NQP sing 256 n y 
C30 N6 NQP sing 257 n n 
C30 C31 NQP sing 258 n n 
C30 C1 NQP sing 259 n n 
N6 C24 NQP sing 260 n n 
C13 C21 NQP sing 261 n y 
C11 C10 NQP doub 262 n y 
O1 C1 NQP doub 263 n n 
C1 N1 NQP sing 264 n n 
C24 N5 NQP doub 265 n y 
C24 C6 NQP sing 266 n y 
C21 C22 NQP doub 267 n y 
N5 C9 NQP sing 268 n y 
C10 C22 NQP sing 269 n y 
C10 N2 NQP sing 270 n n 
C22 O3 NQP sing 271 n n 
N1 C6 NQP sing 272 n n 
N1 C2 NQP sing 273 n n 
C6 C7 NQP doub 274 n y 
C9 N2 NQP sing 275 n n 
C9 C8 NQP doub 276 n y 
O3 C23 NQP sing 277 n n 
C2 C3 NQP sing 278 n n 
C7 C8 NQP sing 279 n y 
C3 C4 NQP sing 280 n n 
C4 C5 NQP doub 281 n n 
C4 H1 NQP sing 282 n n 
C5 H2 NQP sing 283 n n 
C5 H3 NQP sing 284 n n 
C11 H4 NQP sing 285 n n 
C7 H5 NQP sing 286 n n 
C8 H6 NQP sing 287 n n 
C12 H7 NQP sing 288 n n 
N2 H8 NQP sing 289 n n 
C3 H9 NQP sing 290 n n 
C3 H10 NQP sing 291 n n 
N3 H11 NQP sing 292 n n 
C15 H12 NQP sing 293 n n 
C16 H13 NQP sing 294 n n 
C16 H14 NQP sing 295 n n 
C17 H15 NQP sing 296 n n 
C17 H16 NQP sing 297 n n 
C18 H17 NQP sing 298 n n 
C18 H18 NQP sing 299 n n 
C18 H19 NQP sing 300 n n 
C19 H20 NQP sing 301 n n 
C19 H21 NQP sing 302 n n 
C2 H22 NQP sing 303 n n 
C2 H23 NQP sing 304 n n 
C20 H24 NQP sing 305 n n 
C20 H25 NQP sing 306 n n 
C21 H26 NQP sing 307 n n 
C23 H27 NQP sing 308 n n 
C23 H28 NQP sing 309 n n 
C23 H29 NQP sing 310 n n 
C25 H30 NQP sing 311 n n 
C26 H31 NQP sing 312 n n 
C26 H32 NQP sing 313 n n 
C27 H33 NQP sing 314 n n 
C27 H34 NQP sing 315 n n 
C28 H35 NQP sing 316 n n 
C28 H36 NQP sing 317 n n 
C29 H37 NQP sing 318 n n 
C29 H38 NQP sing 319 n n 
C30 H39 NQP sing 320 n n 
C31 H40 NQP sing 321 n n 
C31 H41 NQP sing 322 n n 
C31 H42 NQP sing 323 n n 
#
_atom_sites.entry_id                     6P3A 
_atom_sites.fract_transf_matrix[1][1]    0.010819 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010819 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008516 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NQP A 1 4000 4000 NQP DRG . 
D 2 NQP B 1 4000 4000 NQP DRG . 
E 3 HOH A 1 4101 1 HOH HOH . 
E 3 HOH A 2 4102 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 NQP . . . D 2 -33.587 -4.972 -11.713 1 133.18 ? C4 NQP 4000 B 1 
HETATM 2 C C14 NQP . . . D 2 -43.456 -9.547 -17.487 1 152.87 ? C14 NQP 4000 B 1 
HETATM 3 C C5 NQP . . . D 2 -32.803 -5.214 -10.708 1 130.6 ? C5 NQP 4000 B 1 
HETATM 4 C C6 NQP . . . D 2 -35.956 -5.741 -14.42 1 143.32 ? C6 NQP 4000 B 1 
HETATM 5 C C11 NQP . . . D 2 -40.205 -8.299 -16.115 1 136.15 ? C11 NQP 4000 B 1 
HETATM 6 C C7 NQP . . . D 2 -36.64 -5.641 -13.214 1 146.19 ? C7 NQP 4000 B 1 
HETATM 7 C C8 NQP . . . D 2 -37.79 -6.369 -13.027 1 144.78 ? C8 NQP 4000 B 1 
HETATM 8 C C9 NQP . . . D 2 -38.248 -7.203 -14.08 1 143.86 ? C9 NQP 4000 B 1 
HETATM 9 C C10 NQP . . . D 2 -40.423 -8.316 -14.739 1 139.77 ? C10 NQP 4000 B 1 
HETATM 10 C C12 NQP . . . D 2 -41.199 -8.711 -16.975 1 140.03 ? C12 NQP 4000 B 1 
HETATM 11 C C13 NQP . . . D 2 -42.432 -9.116 -16.484 1 148.86 ? C13 NQP 4000 B 1 
HETATM 12 N N1 NQP . . . D 2 -34.776 -4.996 -14.683 1 132.84 ? N1 NQP 4000 B 1 
HETATM 13 N N2 NQP . . . D 2 -39.416 -7.89 -13.842 1 135.68 ? N2 NQP 4000 B 1 
HETATM 14 C C3 NQP . . . D 2 -33.224 -4.152 -12.908 1 131.39 ? C3 NQP 4000 B 1 
HETATM 15 N N3 NQP . . . D 2 -44.563 -10.154 -17.028 1 156.18 ? N3 NQP 4000 B 1 
HETATM 16 C C1 NQP . . . D 2 -33.986 -5.265 -15.765 1 135.85 ? C1 NQP 4000 B 1 
HETATM 17 C C15 NQP . . . D 2 -45.352 -11.055 -17.872 1 148.84 ? C15 NQP 4000 B 1 
HETATM 18 C C16 NQP . . . D 2 -46.678 -10.421 -18.265 1 133.68 ? C16 NQP 4000 B 1 
HETATM 19 C C17 NQP . . . D 2 -47.483 -11.385 -19.12 1 125.74 ? C17 NQP 4000 B 1 
HETATM 20 C C18 NQP . . . D 2 -48.504 -13.565 -19.262 1 102.89 ? C18 NQP 4000 B 1 
HETATM 21 C C19 NQP . . . D 2 -46.447 -13.288 -18.04 1 136.67 ? C19 NQP 4000 B 1 
HETATM 22 C C2 NQP . . . D 2 -34.404 -3.849 -13.814 1 132.11 ? C2 NQP 4000 B 1 
HETATM 23 C C20 NQP . . . D 2 -45.612 -12.374 -17.161 1 144.42 ? C20 NQP 4000 B 1 
HETATM 24 C C21 NQP . . . D 2 -42.656 -9.118 -15.109 1 150.93 ? C21 NQP 4000 B 1 
HETATM 25 C C22 NQP . . . D 2 -41.673 -8.705 -14.234 1 143.19 ? C22 NQP 4000 B 1 
HETATM 26 C C23 NQP . . . D 2 -42.026 -7.43 -12.22 1 108.56 ? C23 NQP 4000 B 1 
HETATM 27 C C24 NQP . . . D 2 -36.485 -6.581 -15.43 1 146.17 ? C24 NQP 4000 B 1 
HETATM 28 C C25 NQP . . . D 2 -36.426 -6.98 -17.981 1 142.74 ? C25 NQP 4000 B 1 
HETATM 29 C C26 NQP . . . D 2 -37 -8.383 -18.132 1 140.06 ? C26 NQP 4000 B 1 
HETATM 30 C C27 NQP . . . D 2 -37.509 -8.583 -19.539 1 137.23 ? C27 NQP 4000 B 1 
HETATM 31 C C28 NQP . . . D 2 -37.871 -6.282 -19.874 1 130.5 ? C28 NQP 4000 B 1 
HETATM 32 C C29 NQP . . . D 2 -37.393 -5.919 -18.491 1 139.14 ? C29 NQP 4000 B 1 
HETATM 33 C C30 NQP . . . D 2 -34.385 -6.426 -16.651 1 134.9 ? C30 NQP 4000 B 1 
HETATM 34 C C31 NQP . . . D 2 -33.65 -7.695 -16.26 1 131.99 ? C31 NQP 4000 B 1 
HETATM 35 N N4 NQP . . . D 2 -47.715 -12.655 -18.42 1 128.45 ? N4 NQP 4000 B 1 
HETATM 36 N N5 NQP . . . D 2 -37.624 -7.277 -15.248 1 148.66 ? N5 NQP 4000 B 1 
HETATM 37 N N6 NQP . . . D 2 -35.833 -6.663 -16.649 1 140.15 ? N6 NQP 4000 B 1 
HETATM 38 O O1 NQP . . . D 2 -32.991 -4.596 -16.015 1 146.25 ? O1 NQP 4000 B 1 
HETATM 39 O O2 NQP . . . D 2 -43.254 -9.393 -18.691 1 148.8 ? O2 NQP 4000 B 1 
HETATM 40 O O3 NQP . . . D 2 -41.852 -8.688 -12.876 1 126.7 ? O3 NQP 4000 B 1 
HETATM 41 O O4 NQP . . . D 2 -38.459 -7.58 -19.886 1 135.33 ? O4 NQP 4000 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           41 
#