data_6P3D # _model_server_result.job_id IW3bFvhuSfyVdnfVUwvEaA _model_server_result.datetime_utc '2024-11-15 11:56:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6P3D # _exptl.entry_id 6P3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 532.559 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P3D _cell.length_a 118.839 _cell.length_b 118.839 _cell.length_c 51.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 12.8825 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H27 F3 N6 O' _chem_comp.formula_weight 532.559 _chem_comp.id 0LI _chem_comp.mon_nstd_flag . _chem_comp.name '3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Ponatinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C84 0LI doub 1 n y N1 C1 0LI sing 2 n y N3 C20 0LI sing 3 n n N3 C21 0LI sing 4 n n N3 C24 0LI sing 5 n n C4 C5 0LI sing 6 n n C4 C3 0LI trip 7 n n C5 C6 0LI doub 8 n y C5 C10 0LI sing 9 n y C6 C7 0LI sing 10 n y C6 C11 0LI sing 11 n n C7 C8 0LI doub 12 n y C7 H7 0LI sing 13 n n C8 C9 0LI sing 14 n y C8 H8 0LI sing 15 n n C10 C9 0LI doub 16 n y C10 H10 0LI sing 17 n n C13 N2 0LI sing 18 n n C13 C14 0LI doub 19 n y C13 C18 0LI sing 20 n y C15 C14 0LI sing 21 n y C15 C16 0LI doub 22 n y C15 H15 0LI sing 23 n n C17 C16 0LI sing 24 n y C17 C18 0LI doub 25 n y C17 C19 0LI sing 26 n n C20 C16 0LI sing 27 n n C20 H20 0LI sing 28 n n C20 H20A 0LI sing 29 n n C21 C22 0LI sing 30 n n C21 H21 0LI sing 31 n n C21 H21A 0LI sing 32 n n C22 N4 0LI sing 33 n n C22 H22 0LI sing 34 n n C22 H22A 0LI sing 35 n n C24 C23 0LI sing 36 n n C24 H24 0LI sing 37 n n C24 H24A 0LI sing 38 n n C81 C82 0LI doub 39 n y C81 C84 0LI sing 40 n y C81 H81 0LI sing 41 n n C82 C83 0LI sing 42 n y C82 H82 0LI sing 43 n n C83 N81 0LI doub 44 n y C83 H83 0LI sing 45 n n N81 N82 0LI sing 46 n y N82 C84 0LI sing 47 n y N82 C2 0LI sing 48 n y C1 C2 0LI doub 49 n y C1 H1 0LI sing 50 n n C2 C3 0LI sing 51 n n C9 C12 0LI sing 52 n n C11 H11 0LI sing 53 n n C11 H11A 0LI sing 54 n n C11 H11B 0LI sing 55 n n C12 O1 0LI doub 56 n n C12 N2 0LI sing 57 n n N2 HN2 0LI sing 58 n n C14 H14 0LI sing 59 n n C18 H18 0LI sing 60 n n C19 F1 0LI sing 61 n n C19 F2 0LI sing 62 n n C19 F3 0LI sing 63 n n C23 N4 0LI sing 64 n n C23 H23 0LI sing 65 n n C23 H23A 0LI sing 66 n n C25 N4 0LI sing 67 n n C25 H25 0LI sing 68 n n C25 H25A 0LI sing 69 n n C25 H25B 0LI sing 70 n n # _atom_sites.entry_id 6P3D _atom_sites.fract_transf_matrix[1][1] 0.008415 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0LI A 1 1001 1001 0LI 0LI . C 3 SO4 A 1 1002 1002 SO4 SO4 . D 3 SO4 A 1 1003 1003 SO4 SO4 . E 3 SO4 A 1 1004 1004 SO4 SO4 . F 3 SO4 A 1 1005 1005 SO4 SO4 . G 3 SO4 A 1 1006 1006 SO4 SO4 . H 3 SO4 A 1 1007 1007 SO4 SO4 . I 3 SO4 A 1 1008 1008 SO4 SO4 . J 3 SO4 A 1 1009 1009 SO4 SO4 . K 4 NH4 A 1 1010 1010 NH4 NH4 . L 5 EDO A 1 1011 1011 EDO EDO . M 5 EDO A 1 1012 1012 EDO EDO . N 6 HOH A 1 1101 1101 HOH HOH . N 6 HOH A 2 1102 1102 HOH HOH . N 6 HOH A 3 1103 1103 HOH HOH . N 6 HOH A 4 1104 1104 HOH HOH . N 6 HOH A 5 1105 1105 HOH HOH . N 6 HOH A 6 1106 1106 HOH HOH . N 6 HOH A 7 1107 1107 HOH HOH . N 6 HOH A 8 1108 1108 HOH HOH . N 6 HOH A 9 1109 1109 HOH HOH . N 6 HOH A 10 1110 1110 HOH HOH . N 6 HOH A 11 1111 1111 HOH HOH . N 6 HOH A 12 1112 1112 HOH HOH . N 6 HOH A 13 1113 1113 HOH HOH . N 6 HOH A 14 1114 1114 HOH HOH . N 6 HOH A 15 1115 1115 HOH HOH . N 6 HOH A 16 1116 1116 HOH HOH . N 6 HOH A 17 1117 1117 HOH HOH . N 6 HOH A 18 1118 1118 HOH HOH . N 6 HOH A 19 1119 1119 HOH HOH . N 6 HOH A 20 1120 1120 HOH HOH . N 6 HOH A 21 1121 1121 HOH HOH . N 6 HOH A 22 1122 1122 HOH HOH . N 6 HOH A 23 1123 1123 HOH HOH . N 6 HOH A 24 1124 1124 HOH HOH . N 6 HOH A 25 1125 1125 HOH HOH . N 6 HOH A 26 1126 1126 HOH HOH . N 6 HOH A 27 1127 1127 HOH HOH . N 6 HOH A 28 1128 1128 HOH HOH . N 6 HOH A 29 1129 1129 HOH HOH . N 6 HOH A 30 1130 1130 HOH HOH . N 6 HOH A 31 1131 1131 HOH HOH . N 6 HOH A 32 1132 1132 HOH HOH . N 6 HOH A 33 1133 1133 HOH HOH . N 6 HOH A 34 1134 1134 HOH HOH . N 6 HOH A 35 1135 1135 HOH HOH . N 6 HOH A 36 1136 1136 HOH HOH . N 6 HOH A 37 1137 1137 HOH HOH . N 6 HOH A 38 1138 1138 HOH HOH . N 6 HOH A 39 1139 1139 HOH HOH . N 6 HOH A 40 1140 1140 HOH HOH . N 6 HOH A 41 1141 1141 HOH HOH . N 6 HOH A 42 1142 1142 HOH HOH . N 6 HOH A 43 1143 1143 HOH HOH . N 6 HOH A 44 1144 1144 HOH HOH . N 6 HOH A 45 1145 1145 HOH HOH . N 6 HOH A 46 1146 1146 HOH HOH . N 6 HOH A 47 1147 1147 HOH HOH . N 6 HOH A 48 1148 1148 HOH HOH . N 6 HOH A 49 1149 1149 HOH HOH . N 6 HOH A 50 1150 1150 HOH HOH . N 6 HOH A 51 1151 1151 HOH HOH . N 6 HOH A 52 1152 1152 HOH HOH . N 6 HOH A 53 1153 1153 HOH HOH . N 6 HOH A 54 1154 1154 HOH HOH . N 6 HOH A 55 1155 1155 HOH HOH . N 6 HOH A 56 1156 1156 HOH HOH . N 6 HOH A 57 1157 1157 HOH HOH . N 6 HOH A 58 1158 1158 HOH HOH . N 6 HOH A 59 1159 1159 HOH HOH . N 6 HOH A 60 1160 1160 HOH HOH . N 6 HOH A 61 1161 1161 HOH HOH . N 6 HOH A 62 1162 1162 HOH HOH . N 6 HOH A 63 1163 1163 HOH HOH . N 6 HOH A 64 1164 1164 HOH HOH . N 6 HOH A 65 1165 1165 HOH HOH . N 6 HOH A 66 1166 1166 HOH HOH . N 6 HOH A 67 1167 1167 HOH HOH . N 6 HOH A 68 1168 1168 HOH HOH . N 6 HOH A 69 1169 1169 HOH HOH . N 6 HOH A 70 1170 1170 HOH HOH . N 6 HOH A 71 1171 1171 HOH HOH . N 6 HOH A 72 1172 1172 HOH HOH . N 6 HOH A 73 1173 1173 HOH HOH . N 6 HOH A 74 1174 1174 HOH HOH . N 6 HOH A 75 1175 1175 HOH HOH . N 6 HOH A 76 1176 1176 HOH HOH . N 6 HOH A 77 1177 1177 HOH HOH . N 6 HOH A 78 1178 1178 HOH HOH . N 6 HOH A 79 1179 1179 HOH HOH . N 6 HOH A 80 1180 1180 HOH HOH . N 6 HOH A 81 1181 1181 HOH HOH . N 6 HOH A 82 1182 1182 HOH HOH . N 6 HOH A 83 1183 1183 HOH HOH . N 6 HOH A 84 1184 1184 HOH HOH . N 6 HOH A 85 1185 1185 HOH HOH . N 6 HOH A 86 1186 1186 HOH HOH . N 6 HOH A 87 1187 1187 HOH HOH . N 6 HOH A 88 1188 1188 HOH HOH . N 6 HOH A 89 1189 1189 HOH HOH . N 6 HOH A 90 1190 1190 HOH HOH . N 6 HOH A 91 1191 1191 HOH HOH . N 6 HOH A 92 1192 1192 HOH HOH . N 6 HOH A 93 1193 1193 HOH HOH . N 6 HOH A 94 1194 1194 HOH HOH . N 6 HOH A 95 1195 1195 HOH HOH . N 6 HOH A 96 1196 1196 HOH HOH . N 6 HOH A 97 1197 1197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 0LI . . . B 2 37.502 22.382 11.968 1 22.13 ? N1 0LI 1001 A 1 HETATM 2 N N3 0LI . . . B 2 47.888 27.701 1.299 1 19.48 ? N3 0LI 1001 A 1 HETATM 3 C C4 0LI . . . B 2 41.824 23.924 11.175 1 20.08 ? C4 0LI 1001 A 1 HETATM 4 C C5 0LI . . . B 2 42.832 24.666 10.83 1 19.3 ? C5 0LI 1001 A 1 HETATM 5 C C6 0LI . . . B 2 43.422 25.659 11.744 1 20.07 ? C6 0LI 1001 A 1 HETATM 6 C C7 0LI . . . B 2 44.345 26.55 11.282 1 19.76 ? C7 0LI 1001 A 1 HETATM 7 C C8 0LI . . . B 2 44.731 26.571 9.946 1 21.3 ? C8 0LI 1001 A 1 HETATM 8 C C10 0LI . . . B 2 43.205 24.79 9.519 1 20.01 ? C10 0LI 1001 A 1 HETATM 9 C C13 0LI . . . B 2 45.683 26.913 5.801 1 18.49 ? C13 0LI 1001 A 1 HETATM 10 C C15 0LI . . . B 2 47.23 27.588 4.02 1 19.26 ? C15 0LI 1001 A 1 HETATM 11 C C17 0LI . . . B 2 44.872 27.316 3.498 1 20.77 ? C17 0LI 1001 A 1 HETATM 12 C C20 0LI . . . B 2 46.521 28.053 1.631 1 20.09 ? C20 0LI 1001 A 1 HETATM 13 C C21 0LI . . . B 2 48.058 26.225 1.153 1 18.93 ? C21 0LI 1001 A 1 HETATM 14 C C22 0LI . . . B 2 49.565 26.057 0.934 1 19.49 ? C22 0LI 1001 A 1 HETATM 15 C C24 0LI . . . B 2 48.273 28.403 0.038 1 18.84 ? C24 0LI 1001 A 1 HETATM 16 C C81 0LI . . . B 2 37.631 19.881 12.348 1 23.65 ? C81 0LI 1001 A 1 HETATM 17 C C82 0LI . . . B 2 38.514 18.822 12.393 1 21.54 ? C82 0LI 1001 A 1 HETATM 18 C C83 0LI . . . B 2 39.879 19.07 12.196 1 24.04 ? C83 0LI 1001 A 1 HETATM 19 N N81 0LI . . . B 2 40.399 20.297 11.989 1 23.4 ? N81 0LI 1001 A 1 HETATM 20 N N82 0LI . . . B 2 39.449 21.323 11.932 1 21.63 ? N82 0LI 1001 A 1 HETATM 21 C C84 0LI . . . B 2 38.135 21.172 12.101 1 22.7 ? C84 0LI 1001 A 1 HETATM 22 C C1 0LI . . . B 2 38.498 23.271 11.742 1 20.73 ? C1 0LI 1001 A 1 HETATM 23 C C2 0LI . . . B 2 39.694 22.591 11.759 1 21.41 ? C2 0LI 1001 A 1 HETATM 24 C C3 0LI . . . B 2 40.844 23.273 11.457 1 20.76 ? C3 0LI 1001 A 1 HETATM 25 C C9 0LI . . . B 2 44.167 25.686 9.048 1 18.25 ? C9 0LI 1001 A 1 HETATM 26 C C11 0LI . . . B 2 43.015 25.683 13.172 1 20.99 ? C11 0LI 1001 A 1 HETATM 27 C C12 0LI . . . B 2 44.507 25.747 7.571 1 19.12 ? C12 0LI 1001 A 1 HETATM 28 O O1 0LI . . . B 2 43.67 25.227 6.843 1 19.89 ? O1 0LI 1001 A 1 HETATM 29 N N2 0LI . . . B 2 45.536 26.476 7.062 1 17.72 ? N2 0LI 1001 A 1 HETATM 30 C C14 0LI . . . B 2 46.978 27.214 5.352 1 19.67 ? C14 0LI 1001 A 1 HETATM 31 C C16 0LI . . . B 2 46.234 27.667 3.073 1 19.62 ? C16 0LI 1001 A 1 HETATM 32 C C18 0LI . . . B 2 44.667 26.947 4.824 1 20.18 ? C18 0LI 1001 A 1 HETATM 33 C C19 0LI . . . B 2 43.718 27.391 2.506 1 22.19 ? C19 0LI 1001 A 1 HETATM 34 F F1 0LI . . . B 2 43.72 28.561 1.83 1 23.67 ? F1 0LI 1001 A 1 HETATM 35 F F2 0LI . . . B 2 43.831 26.394 1.68 1 23.95 ? F2 0LI 1001 A 1 HETATM 36 F F3 0LI . . . B 2 42.541 27.277 3.11 1 23.75 ? F3 0LI 1001 A 1 HETATM 37 C C23 0LI . . . B 2 49.797 28.212 -0.189 1 17.95 ? C23 0LI 1001 A 1 HETATM 38 C C25 0LI . . . B 2 51.474 26.531 -0.426 1 20.77 ? C25 0LI 1001 A 1 HETATM 39 N N4 0LI . . . B 2 50.013 26.763 -0.272 1 18.8 ? N4 0LI 1001 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #