data_6P3J # _model_server_result.job_id 5JiZBjgb3ktlnUGYCTAyRw _model_server_result.datetime_utc '2024-11-09 02:39:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p3j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":407}' # _entry.id 6P3J # _exptl.entry_id 6P3J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P3J _cell.length_a 62.776 _cell.length_b 67.364 _cell.length_c 161.072 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 266 A ASP 266 1_555 I CA CA . B CA 402 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc2 A OD2 ASP 266 A ASP 266 1_555 I CA CA . B CA 402 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc3 O O HOH . A HOH 507 1_555 N NA NA . B NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 O O HOH . A HOH 513 4_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc5 O O HOH . A HOH 516 4_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc6 O O HOH . A HOH 543 4_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc7 O O HOH . A HOH 584 1_555 N NA NA . B NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc8 B O ARG 3 B ARG 3 1_555 N NA NA . B NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc9 B O ARG 6 B ARG 6 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc10 B O MET 8 B MET 8 1_555 I CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc11 B OD1 ASP 9 B ASP 9 1_555 I CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc12 B OE1 GLU 359 B GLU 359 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc13 B OE2 GLU 359 B GLU 359 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc14 B OE2 GLU 359 B GLU 359 1_555 I CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc15 H CA CA . B CA 401 1_555 P O HOH . B HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc16 H CA CA . B CA 401 1_555 P O HOH . B HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc17 I CA CA . B CA 402 1_555 P O HOH . B HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc18 I CA CA . B CA 402 1_555 P O HOH . B HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc19 I CA CA . B CA 402 1_555 P O HOH . B HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc20 N NA NA . B NA 407 1_555 P O HOH . B HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc21 N NA NA . B NA 407 1_555 P O HOH . B HOH 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6P3J _atom_sites.fract_transf_matrix[1][1] 0.01593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 401 361 CL CL . D 2 CL A 1 402 362 CL CL . E 2 CL A 1 403 363 CL CL . F 2 CL A 1 404 364 CL CL . G 2 CL A 1 405 365 CL CL . H 3 CA B 1 401 362 CA CA . I 3 CA B 1 402 363 CA CA . J 2 CL B 1 403 364 CL CL . K 2 CL B 1 404 365 CL CL . L 2 CL B 1 405 366 CL CL . M 2 CL B 1 406 367 CL CL . N 4 NA B 1 407 368 NA NA . O 5 HOH A 1 501 460 HOH HOH . O 5 HOH A 2 502 468 HOH HOH . O 5 HOH A 3 503 464 HOH HOH . O 5 HOH A 4 504 423 HOH HOH . O 5 HOH A 5 505 430 HOH HOH . O 5 HOH A 6 506 476 HOH HOH . O 5 HOH A 7 507 475 HOH HOH . O 5 HOH A 8 508 431 HOH HOH . O 5 HOH A 9 509 417 HOH HOH . O 5 HOH A 10 510 396 HOH HOH . O 5 HOH A 11 511 366 HOH HOH . O 5 HOH A 12 512 474 HOH HOH . O 5 HOH A 13 513 379 HOH HOH . O 5 HOH A 14 514 388 HOH HOH . O 5 HOH A 15 515 481 HOH HOH . O 5 HOH A 16 516 394 HOH HOH . O 5 HOH A 17 517 442 HOH HOH . O 5 HOH A 18 518 467 HOH HOH . O 5 HOH A 19 519 448 HOH HOH . O 5 HOH A 20 520 410 HOH HOH . O 5 HOH A 21 521 405 HOH HOH . O 5 HOH A 22 522 409 HOH HOH . O 5 HOH A 23 523 477 HOH HOH . O 5 HOH A 24 524 397 HOH HOH . O 5 HOH A 25 525 374 HOH HOH . O 5 HOH A 26 526 471 HOH HOH . O 5 HOH A 27 527 470 HOH HOH . O 5 HOH A 28 528 392 HOH HOH . O 5 HOH A 29 529 462 HOH HOH . O 5 HOH A 30 530 429 HOH HOH . O 5 HOH A 31 531 382 HOH HOH . O 5 HOH A 32 532 390 HOH HOH . O 5 HOH A 33 533 383 HOH HOH . O 5 HOH A 34 534 378 HOH HOH . O 5 HOH A 35 535 399 HOH HOH . O 5 HOH A 36 536 391 HOH HOH . O 5 HOH A 37 537 403 HOH HOH . O 5 HOH A 38 538 376 HOH HOH . O 5 HOH A 39 539 445 HOH HOH . O 5 HOH A 40 540 441 HOH HOH . O 5 HOH A 41 541 437 HOH HOH . O 5 HOH A 42 542 406 HOH HOH . O 5 HOH A 43 543 377 HOH HOH . O 5 HOH A 44 544 456 HOH HOH . O 5 HOH A 45 545 400 HOH HOH . O 5 HOH A 46 546 439 HOH HOH . O 5 HOH A 47 547 418 HOH HOH . O 5 HOH A 48 548 411 HOH HOH . O 5 HOH A 49 549 408 HOH HOH . O 5 HOH A 50 550 433 HOH HOH . O 5 HOH A 51 551 370 HOH HOH . O 5 HOH A 52 552 421 HOH HOH . O 5 HOH A 53 553 412 HOH HOH . O 5 HOH A 54 554 375 HOH HOH . O 5 HOH A 55 555 413 HOH HOH . O 5 HOH A 56 556 422 HOH HOH . O 5 HOH A 57 557 371 HOH HOH . O 5 HOH A 58 558 369 HOH HOH . O 5 HOH A 59 559 381 HOH HOH . O 5 HOH A 60 560 368 HOH HOH . O 5 HOH A 61 561 438 HOH HOH . O 5 HOH A 62 562 463 HOH HOH . O 5 HOH A 63 563 407 HOH HOH . O 5 HOH A 64 564 447 HOH HOH . O 5 HOH A 65 565 372 HOH HOH . O 5 HOH A 66 566 416 HOH HOH . O 5 HOH A 67 567 402 HOH HOH . O 5 HOH A 68 568 420 HOH HOH . O 5 HOH A 69 569 401 HOH HOH . O 5 HOH A 70 570 432 HOH HOH . O 5 HOH A 71 571 452 HOH HOH . O 5 HOH A 72 572 440 HOH HOH . O 5 HOH A 73 573 387 HOH HOH . O 5 HOH A 74 574 404 HOH HOH . O 5 HOH A 75 575 385 HOH HOH . O 5 HOH A 76 576 373 HOH HOH . O 5 HOH A 77 577 465 HOH HOH . O 5 HOH A 78 578 443 HOH HOH . O 5 HOH A 79 579 367 HOH HOH . O 5 HOH A 80 580 426 HOH HOH . O 5 HOH A 81 581 436 HOH HOH . O 5 HOH A 82 582 395 HOH HOH . O 5 HOH A 83 583 469 HOH HOH . O 5 HOH A 84 584 451 HOH HOH . O 5 HOH A 85 585 428 HOH HOH . O 5 HOH A 86 586 380 HOH HOH . O 5 HOH A 87 587 386 HOH HOH . O 5 HOH A 88 588 424 HOH HOH . O 5 HOH A 89 589 393 HOH HOH . O 5 HOH A 90 590 461 HOH HOH . O 5 HOH A 91 591 450 HOH HOH . O 5 HOH A 92 592 455 HOH HOH . O 5 HOH A 93 593 425 HOH HOH . O 5 HOH A 94 594 384 HOH HOH . O 5 HOH A 95 595 480 HOH HOH . O 5 HOH A 96 596 414 HOH HOH . O 5 HOH A 97 597 419 HOH HOH . O 5 HOH A 98 598 449 HOH HOH . O 5 HOH A 99 599 478 HOH HOH . O 5 HOH A 100 600 459 HOH HOH . O 5 HOH A 101 601 472 HOH HOH . O 5 HOH A 102 602 398 HOH HOH . O 5 HOH A 103 603 417 HOH HOH . O 5 HOH A 104 604 444 HOH HOH . O 5 HOH A 105 605 479 HOH HOH . O 5 HOH A 106 606 458 HOH HOH . O 5 HOH A 107 607 435 HOH HOH . O 5 HOH A 108 608 427 HOH HOH . O 5 HOH A 109 609 415 HOH HOH . O 5 HOH A 110 610 389 HOH HOH . O 5 HOH A 111 611 473 HOH HOH . O 5 HOH A 112 612 434 HOH HOH . O 5 HOH A 113 613 466 HOH HOH . O 5 HOH A 114 614 454 HOH HOH . O 5 HOH A 115 615 453 HOH HOH . O 5 HOH A 116 616 418 HOH HOH . O 5 HOH A 117 617 457 HOH HOH . O 5 HOH A 118 618 469 HOH HOH . O 5 HOH A 119 619 425 HOH HOH . O 5 HOH A 120 620 434 HOH HOH . P 5 HOH B 1 501 396 HOH HOH . P 5 HOH B 2 502 449 HOH HOH . P 5 HOH B 3 503 460 HOH HOH . P 5 HOH B 4 504 435 HOH HOH . P 5 HOH B 5 505 397 HOH HOH . P 5 HOH B 6 506 459 HOH HOH . P 5 HOH B 7 507 436 HOH HOH . P 5 HOH B 8 508 419 HOH HOH . P 5 HOH B 9 509 410 HOH HOH . P 5 HOH B 10 510 392 HOH HOH . P 5 HOH B 11 511 442 HOH HOH . P 5 HOH B 12 512 389 HOH HOH . P 5 HOH B 13 513 471 HOH HOH . P 5 HOH B 14 514 408 HOH HOH . P 5 HOH B 15 515 448 HOH HOH . P 5 HOH B 16 516 391 HOH HOH . P 5 HOH B 17 517 439 HOH HOH . P 5 HOH B 18 518 393 HOH HOH . P 5 HOH B 19 519 404 HOH HOH . P 5 HOH B 20 520 452 HOH HOH . P 5 HOH B 21 521 468 HOH HOH . P 5 HOH B 22 522 372 HOH HOH . P 5 HOH B 23 523 377 HOH HOH . P 5 HOH B 24 524 370 HOH HOH . P 5 HOH B 25 525 438 HOH HOH . P 5 HOH B 26 526 387 HOH HOH . P 5 HOH B 27 527 381 HOH HOH . P 5 HOH B 28 528 416 HOH HOH . P 5 HOH B 29 529 373 HOH HOH . P 5 HOH B 30 530 395 HOH HOH . P 5 HOH B 31 531 424 HOH HOH . P 5 HOH B 32 532 427 HOH HOH . P 5 HOH B 33 533 390 HOH HOH . P 5 HOH B 34 534 423 HOH HOH . P 5 HOH B 35 535 476 HOH HOH . P 5 HOH B 36 536 386 HOH HOH . P 5 HOH B 37 537 402 HOH HOH . P 5 HOH B 38 538 447 HOH HOH . P 5 HOH B 39 539 422 HOH HOH . P 5 HOH B 40 540 409 HOH HOH . P 5 HOH B 41 541 414 HOH HOH . P 5 HOH B 42 542 421 HOH HOH . P 5 HOH B 43 543 376 HOH HOH . P 5 HOH B 44 544 474 HOH HOH . P 5 HOH B 45 545 379 HOH HOH . P 5 HOH B 46 546 406 HOH HOH . P 5 HOH B 47 547 382 HOH HOH . P 5 HOH B 48 548 407 HOH HOH . P 5 HOH B 49 549 369 HOH HOH . P 5 HOH B 50 550 454 HOH HOH . P 5 HOH B 51 551 428 HOH HOH . P 5 HOH B 52 552 440 HOH HOH . P 5 HOH B 53 553 465 HOH HOH . P 5 HOH B 54 554 399 HOH HOH . P 5 HOH B 55 555 384 HOH HOH . P 5 HOH B 56 556 400 HOH HOH . P 5 HOH B 57 557 457 HOH HOH . P 5 HOH B 58 558 401 HOH HOH . P 5 HOH B 59 559 403 HOH HOH . P 5 HOH B 60 560 388 HOH HOH . P 5 HOH B 61 561 453 HOH HOH . P 5 HOH B 62 562 385 HOH HOH . P 5 HOH B 63 563 420 HOH HOH . P 5 HOH B 64 564 426 HOH HOH . P 5 HOH B 65 565 371 HOH HOH . P 5 HOH B 66 566 432 HOH HOH . P 5 HOH B 67 567 375 HOH HOH . P 5 HOH B 68 568 451 HOH HOH . P 5 HOH B 69 569 463 HOH HOH . P 5 HOH B 70 570 398 HOH HOH . P 5 HOH B 71 571 444 HOH HOH . P 5 HOH B 72 572 378 HOH HOH . P 5 HOH B 73 573 411 HOH HOH . P 5 HOH B 74 574 431 HOH HOH . P 5 HOH B 75 575 374 HOH HOH . P 5 HOH B 76 576 443 HOH HOH . P 5 HOH B 77 577 464 HOH HOH . P 5 HOH B 78 578 437 HOH HOH . P 5 HOH B 79 579 380 HOH HOH . P 5 HOH B 80 580 430 HOH HOH . P 5 HOH B 81 581 470 HOH HOH . P 5 HOH B 82 582 383 HOH HOH . P 5 HOH B 83 583 405 HOH HOH . P 5 HOH B 84 584 429 HOH HOH . P 5 HOH B 85 585 461 HOH HOH . P 5 HOH B 86 586 473 HOH HOH . P 5 HOH B 87 587 458 HOH HOH . P 5 HOH B 88 588 472 HOH HOH . P 5 HOH B 89 589 446 HOH HOH . P 5 HOH B 90 590 462 HOH HOH . P 5 HOH B 91 591 412 HOH HOH . P 5 HOH B 92 592 450 HOH HOH . P 5 HOH B 93 593 475 HOH HOH . P 5 HOH B 94 594 441 HOH HOH . P 5 HOH B 95 595 445 HOH HOH . P 5 HOH B 96 596 466 HOH HOH . P 5 HOH B 97 597 467 HOH HOH . P 5 HOH B 98 598 394 HOH HOH . P 5 HOH B 99 599 455 HOH HOH . P 5 HOH B 100 600 415 HOH HOH . P 5 HOH B 101 601 413 HOH HOH . P 5 HOH B 102 602 456 HOH HOH . P 5 HOH B 103 603 433 HOH HOH . P 5 HOH B 104 604 446 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 4 _atom_site.Cartn_x -2.18 _atom_site.Cartn_y 10.986 _atom_site.Cartn_z 4.668 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 407 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #