data_6P3R # _model_server_result.job_id 7dGHPJmNhZvMqAutkSUFhA _model_server_result.datetime_utc '2024-11-22 14:11:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 6P3R # _exptl.entry_id 6P3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 7 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P3R _cell.length_a 185.113 _cell.length_b 234.472 _cell.length_c 284.814 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,I,J,N,O,P,Q,T 1 1 C,D,E,H,K,L,M,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 L N N ? 7 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 2 1 NDG NAG C1 O1 . O4 HO4 . sing 3 ? 5 3 2 MAN NDG C1 O1 . O4 HO4 . sing 4 ? 5 4 3 MAN MAN C1 O1 . O6 HO6 . sing 5 ? 5 5 4 NDG MAN C1 O1 . O2 HO2 . sing 6 ? 5 6 5 GLA NDG C1 O1 . O4 HO4 . sing 7 ? 5 7 6 SIA GLA C2 O2 . O6 HO6 . sing 8 ? 5 8 3 MAN MAN C1 O1 . O3 HO3 . sing 9 ? 6 1 8 NAG Z9N C6 H61 . O1 HO1 . sing 10 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 12 ? 6 4 3 BMA BMA C1 O1 . O6 HO6 . sing 13 ? 6 5 4 NDG BMA C1 O1 . O2 HO2 . sing 14 ? 6 6 5 GAL NDG C1 O1 . O4 HO4 . sing 15 ? 6 7 6 SIA GAL C2 O2 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 F 1 NAG A 1231 NAG 4 n G NAG 2 F 2 NAG A 1232 NAG 5 n H NAG 1 G 1 NAG F 1 GLE 5 n H NDG 2 G 2 NDG F 1 GLE 5 n H MAN 3 G 3 MAN F 1 GLE 5 n H MAN 4 G 4 MAN F 1 GLE 5 n H NDG 5 G 5 NDG F 1 GLE 5 n H GLA 6 G 6 GLA F 1 GLE 5 n H SIA 7 G 7 SIA F 1 GLE 5 n H MAN 8 G 8 MAN F 1 GLE 6 n I NAG 1 H 1 NAG F 2 GLL 6 n I NAG 2 H 2 NAG F 2 GLL 6 n I BMA 3 H 3 BMA F 2 GLL 6 n I BMA 4 H 4 BMA F 2 GLL 6 n I NDG 5 H 5 NDG F 2 GLL 6 n I GAL 6 H 6 GAL F 2 GLL 6 n I SIA 7 H 7 SIA F 2 GLL 6 n I Z9N 8 H 8 Z9N F 2 GLL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 156 A CYS 156 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG CYS 136 B CYS 136 1_555 B SG CYS 196 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 C SG CYS 156 C CYS 156 1_555 C SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 D SG CYS 23 D CYS 23 1_555 D SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 D SG CYS 136 D CYS 136 1_555 D SG CYS 196 D CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 E SG CYS 7 E CYS 64 1_555 E SG CYS 19 E CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 E SG CYS 42 E CYS 99 1_555 E SG CYS 87 E CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 F SG CYS 7 L CYS 64 1_555 F SG CYS 19 L CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 F SG CYS 42 L CYS 99 1_555 F SG CYS 87 L CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 74 A ASN 74 1_555 G C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 C ND2 ASN 74 C ASN 74 1_555 K C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 E ND2 ASN 117 E ASN 174 1_555 M C1 NAG . E NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 F ND2 ASN 106 L ASN 163 1_555 I C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 F ND2 ASN 117 L ASN 174 1_555 O C1 NAG . L NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale6 G O4 NAG . F NAG 1 1_555 G C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale7 H O4 NAG . G NAG 1 1_555 H C1 NDG . G NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale8 H O4 NDG . G NDG 2 1_555 H C1 MAN . G MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 H O6 MAN . G MAN 3 1_555 H C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale10 H O3 MAN . G MAN 3 1_555 H C1 MAN . G MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale11 H O2 MAN . G MAN 4 1_555 H C1 NDG . G NDG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale12 H O4 NDG . G NDG 5 1_555 H C1 GLA . G GLA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale13 H O6 GLA . G GLA 6 1_555 H C2 SIA . G SIA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale14 I O4 NAG . H NAG 1 1_555 I C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale15 I C6 NAG . H NAG 1 1_555 I O1 Z9N . H Z9N 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale16 I O4 NAG . H NAG 2 1_555 I C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale17 I O6 BMA . H BMA 3 1_555 I C1 BMA . H BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale18 I O2 BMA . H BMA 4 1_555 I C1 NDG . H NDG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale19 I O4 NDG . H NDG 5 1_555 I C1 GAL . H GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale20 I O6 GAL . H GAL 6 1_555 I C2 SIA . H SIA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 416 n n P O2 PO4 sing 417 n n P O3 PO4 sing 418 n n P O4 PO4 sing 419 n n # _atom_sites.entry_id 6P3R _atom_sites.fract_transf_matrix[1][1] 0.005402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 7 PO4 B 1 301 1 PO4 PO4 . K 8 NAG C 1 301 1231 NAG NAG . L 7 PO4 D 1 301 4 PO4 PO4 . M 8 NAG E 1 301 3 NAG NAG . N 7 PO4 L 1 301 6 PO4 PO4 . O 8 NAG L 1 302 4 NAG NAG . P 9 HOH A 1 401 35 HOH HOH . P 9 HOH A 2 402 44 HOH HOH . P 9 HOH A 3 403 38 HOH HOH . P 9 HOH A 4 404 41 HOH HOH . P 9 HOH A 5 405 18 HOH HOH . P 9 HOH A 6 406 17 HOH HOH . P 9 HOH A 7 407 34 HOH HOH . P 9 HOH A 8 408 15 HOH HOH . P 9 HOH A 9 409 13 HOH HOH . P 9 HOH A 10 410 45 HOH HOH . P 9 HOH A 11 411 14 HOH HOH . Q 9 HOH B 1 401 5 HOH HOH . Q 9 HOH B 2 402 23 HOH HOH . Q 9 HOH B 3 403 29 HOH HOH . Q 9 HOH B 4 404 16 HOH HOH . Q 9 HOH B 5 405 9 HOH HOH . Q 9 HOH B 6 406 31 HOH HOH . Q 9 HOH B 7 407 42 HOH HOH . Q 9 HOH B 8 408 33 HOH HOH . Q 9 HOH B 9 409 39 HOH HOH . Q 9 HOH B 10 410 3 HOH HOH . Q 9 HOH B 11 411 40 HOH HOH . Q 9 HOH B 12 412 32 HOH HOH . Q 9 HOH B 13 413 6 HOH HOH . Q 9 HOH B 14 414 30 HOH HOH . Q 9 HOH B 15 415 43 HOH HOH . R 9 HOH C 1 401 20 HOH HOH . R 9 HOH C 2 402 8 HOH HOH . R 9 HOH C 3 403 46 HOH HOH . R 9 HOH C 4 404 21 HOH HOH . R 9 HOH C 5 405 47 HOH HOH . S 9 HOH D 1 401 7 HOH HOH . S 9 HOH D 2 402 11 HOH HOH . S 9 HOH D 3 403 1 HOH HOH . S 9 HOH D 4 404 36 HOH HOH . S 9 HOH D 5 405 2 HOH HOH . S 9 HOH D 6 406 22 HOH HOH . S 9 HOH D 7 407 28 HOH HOH . S 9 HOH D 8 408 26 HOH HOH . S 9 HOH D 9 409 10 HOH HOH . S 9 HOH D 10 410 27 HOH HOH . T 9 HOH L 1 401 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . J 7 10.871 -38.026 -43.716 1 182.63 ? P PO4 301 B 1 HETATM 2 O O1 PO4 . . . J 7 12.15 -37.93 -44.513 1 182.13 ? O1 PO4 301 B 1 HETATM 3 O O2 PO4 . . . J 7 10.141 -36.704 -43.767 1 180.07 ? O2 PO4 301 B 1 HETATM 4 O O3 PO4 . . . J 7 9.994 -39.111 -44.296 1 177.91 ? O3 PO4 301 B 1 HETATM 5 O O4 PO4 . . . J 7 11.203 -38.36 -42.282 1 184.97 ? O4 PO4 301 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #