data_6P3T
#
_model_server_result.job_id            jdKOifu8KNTWkmrHIQOBPw 
_model_server_result.datetime_utc      '2025-01-10 08:21:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p3t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    6P3T 
#
_exptl.entry_id    6P3T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6P3T 
_cell.length_a            175.636 
_cell.length_b            175.636 
_cell.length_c            122.749 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P3T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 122.749 
5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 122.749 
6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 122.749 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 L N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     6P3T 
_atom_sites.fract_transf_matrix[1][1]    0.005694 
_atom_sites.fract_transf_matrix[1][2]    0.003287 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008147 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NRS A 1 501 502 NRS A63 . 
C 3 GOL A 1 502 1 GOL GOL . 
D 3 GOL A 1 503 2 GOL GOL . 
E 4 PEG A 1 504 3 PEG PEG . 
F 5 SO4 A 1 505 4 SO4 SO4 . 
G 5 SO4 A 1 506 5 SO4 SO4 . 
H 5 SO4 A 1 507 6 SO4 SO4 . 
I 6 DMS A 1 508 8 DMS DMS . 
J 6 DMS A 1 509 10 DMS DMS . 
K 6 DMS A 1 510 11 DMS DMS . 
L 3 GOL A 1 511 12 GOL GOL . 
M 7 NH4 A 1 512 1 NH4 NH4 . 
N 8 HOH A 1 601 306 HOH HOH . 
N 8 HOH A 2 602 113 HOH HOH . 
N 8 HOH A 3 603 268 HOH HOH . 
N 8 HOH A 4 604 255 HOH HOH . 
N 8 HOH A 5 605 308 HOH HOH . 
N 8 HOH A 6 606 27 HOH HOH . 
N 8 HOH A 7 607 320 HOH HOH . 
N 8 HOH A 8 608 1 HOH HOH . 
N 8 HOH A 9 609 35 HOH HOH . 
N 8 HOH A 10 610 97 HOH HOH . 
N 8 HOH A 11 611 275 HOH HOH . 
N 8 HOH A 12 612 252 HOH HOH . 
N 8 HOH A 13 613 72 HOH HOH . 
N 8 HOH A 14 614 127 HOH HOH . 
N 8 HOH A 15 615 265 HOH HOH . 
N 8 HOH A 16 616 32 HOH HOH . 
N 8 HOH A 17 617 163 HOH HOH . 
N 8 HOH A 18 618 22 HOH HOH . 
N 8 HOH A 19 619 282 HOH HOH . 
N 8 HOH A 20 620 269 HOH HOH . 
N 8 HOH A 21 621 313 HOH HOH . 
N 8 HOH A 22 622 180 HOH HOH . 
N 8 HOH A 23 623 53 HOH HOH . 
N 8 HOH A 24 624 5 HOH HOH . 
N 8 HOH A 25 625 161 HOH HOH . 
N 8 HOH A 26 626 322 HOH HOH . 
N 8 HOH A 27 627 201 HOH HOH . 
N 8 HOH A 28 628 281 HOH HOH . 
N 8 HOH A 29 629 42 HOH HOH . 
N 8 HOH A 30 630 271 HOH HOH . 
N 8 HOH A 31 631 183 HOH HOH . 
N 8 HOH A 32 632 314 HOH HOH . 
N 8 HOH A 33 633 284 HOH HOH . 
N 8 HOH A 34 634 62 HOH HOH . 
N 8 HOH A 35 635 25 HOH HOH . 
N 8 HOH A 36 636 162 HOH HOH . 
N 8 HOH A 37 637 112 HOH HOH . 
N 8 HOH A 38 638 17 HOH HOH . 
N 8 HOH A 39 639 68 HOH HOH . 
N 8 HOH A 40 640 248 HOH HOH . 
N 8 HOH A 41 641 292 HOH HOH . 
N 8 HOH A 42 642 182 HOH HOH . 
N 8 HOH A 43 643 63 HOH HOH . 
N 8 HOH A 44 644 80 HOH HOH . 
N 8 HOH A 45 645 311 HOH HOH . 
N 8 HOH A 46 646 73 HOH HOH . 
N 8 HOH A 47 647 16 HOH HOH . 
N 8 HOH A 48 648 285 HOH HOH . 
N 8 HOH A 49 649 212 HOH HOH . 
N 8 HOH A 50 650 3 HOH HOH . 
N 8 HOH A 51 651 304 HOH HOH . 
N 8 HOH A 52 652 244 HOH HOH . 
N 8 HOH A 53 653 215 HOH HOH . 
N 8 HOH A 54 654 207 HOH HOH . 
N 8 HOH A 55 655 202 HOH HOH . 
N 8 HOH A 56 656 302 HOH HOH . 
N 8 HOH A 57 657 185 HOH HOH . 
N 8 HOH A 58 658 261 HOH HOH . 
N 8 HOH A 59 659 228 HOH HOH . 
N 8 HOH A 60 660 7 HOH HOH . 
N 8 HOH A 61 661 177 HOH HOH . 
N 8 HOH A 62 662 48 HOH HOH . 
N 8 HOH A 63 663 230 HOH HOH . 
N 8 HOH A 64 664 241 HOH HOH . 
N 8 HOH A 65 665 50 HOH HOH . 
N 8 HOH A 66 666 14 HOH HOH . 
N 8 HOH A 67 667 249 HOH HOH . 
N 8 HOH A 68 668 10 HOH HOH . 
N 8 HOH A 69 669 138 HOH HOH . 
N 8 HOH A 70 670 272 HOH HOH . 
N 8 HOH A 71 671 171 HOH HOH . 
N 8 HOH A 72 672 273 HOH HOH . 
N 8 HOH A 73 673 317 HOH HOH . 
N 8 HOH A 74 674 26 HOH HOH . 
N 8 HOH A 75 675 28 HOH HOH . 
N 8 HOH A 76 676 251 HOH HOH . 
N 8 HOH A 77 677 315 HOH HOH . 
N 8 HOH A 78 678 119 HOH HOH . 
N 8 HOH A 79 679 189 HOH HOH . 
N 8 HOH A 80 680 88 HOH HOH . 
N 8 HOH A 81 681 2 HOH HOH . 
N 8 HOH A 82 682 250 HOH HOH . 
N 8 HOH A 83 683 175 HOH HOH . 
N 8 HOH A 84 684 294 HOH HOH . 
N 8 HOH A 85 685 184 HOH HOH . 
N 8 HOH A 86 686 45 HOH HOH . 
N 8 HOH A 87 687 64 HOH HOH . 
N 8 HOH A 88 688 303 HOH HOH . 
N 8 HOH A 89 689 283 HOH HOH . 
N 8 HOH A 90 690 60 HOH HOH . 
N 8 HOH A 91 691 299 HOH HOH . 
N 8 HOH A 92 692 178 HOH HOH . 
N 8 HOH A 93 693 118 HOH HOH . 
N 8 HOH A 94 694 24 HOH HOH . 
N 8 HOH A 95 695 69 HOH HOH . 
N 8 HOH A 96 696 208 HOH HOH . 
N 8 HOH A 97 697 66 HOH HOH . 
N 8 HOH A 98 698 296 HOH HOH . 
N 8 HOH A 99 699 188 HOH HOH . 
N 8 HOH A 100 700 219 HOH HOH . 
N 8 HOH A 101 701 83 HOH HOH . 
N 8 HOH A 102 702 15 HOH HOH . 
N 8 HOH A 103 703 293 HOH HOH . 
N 8 HOH A 104 704 159 HOH HOH . 
N 8 HOH A 105 705 181 HOH HOH . 
N 8 HOH A 106 706 145 HOH HOH . 
N 8 HOH A 107 707 312 HOH HOH . 
N 8 HOH A 108 708 270 HOH HOH . 
N 8 HOH A 109 709 197 HOH HOH . 
N 8 HOH A 110 710 221 HOH HOH . 
N 8 HOH A 111 711 191 HOH HOH . 
N 8 HOH A 112 712 8 HOH HOH . 
N 8 HOH A 113 713 309 HOH HOH . 
N 8 HOH A 114 714 288 HOH HOH . 
N 8 HOH A 115 715 280 HOH HOH . 
N 8 HOH A 116 716 262 HOH HOH . 
N 8 HOH A 117 717 225 HOH HOH . 
N 8 HOH A 118 718 297 HOH HOH . 
N 8 HOH A 119 719 276 HOH HOH . 
N 8 HOH A 120 720 290 HOH HOH . 
N 8 HOH A 121 721 166 HOH HOH . 
N 8 HOH A 122 722 274 HOH HOH . 
N 8 HOH A 123 723 245 HOH HOH . 
N 8 HOH A 124 724 9 HOH HOH . 
N 8 HOH A 125 725 108 HOH HOH . 
N 8 HOH A 126 726 318 HOH HOH . 
N 8 HOH A 127 727 247 HOH HOH . 
N 8 HOH A 128 728 198 HOH HOH . 
N 8 HOH A 129 729 176 HOH HOH . 
N 8 HOH A 130 730 167 HOH HOH . 
N 8 HOH A 131 731 20 HOH HOH . 
N 8 HOH A 132 732 216 HOH HOH . 
N 8 HOH A 133 733 240 HOH HOH . 
N 8 HOH A 134 734 301 HOH HOH . 
N 8 HOH A 135 735 224 HOH HOH . 
N 8 HOH A 136 736 204 HOH HOH . 
N 8 HOH A 137 737 164 HOH HOH . 
N 8 HOH A 138 738 199 HOH HOH . 
N 8 HOH A 139 739 307 HOH HOH . 
N 8 HOH A 140 740 305 HOH HOH . 
N 8 HOH A 141 741 300 HOH HOH . 
N 8 HOH A 142 742 264 HOH HOH . 
N 8 HOH A 143 743 196 HOH HOH . 
N 8 HOH A 144 744 165 HOH HOH . 
N 8 HOH A 145 745 38 HOH HOH . 
N 8 HOH A 146 746 195 HOH HOH . 
N 8 HOH A 147 747 214 HOH HOH . 
N 8 HOH A 148 748 277 HOH HOH . 
N 8 HOH A 149 749 133 HOH HOH . 
N 8 HOH A 150 750 46 HOH HOH . 
N 8 HOH A 151 751 286 HOH HOH . 
N 8 HOH A 152 752 94 HOH HOH . 
N 8 HOH A 153 753 256 HOH HOH . 
N 8 HOH A 154 754 223 HOH HOH . 
N 8 HOH A 155 755 263 HOH HOH . 
N 8 HOH A 156 756 200 HOH HOH . 
N 8 HOH A 157 757 243 HOH HOH . 
N 8 HOH A 158 758 136 HOH HOH . 
N 8 HOH A 159 759 173 HOH HOH . 
N 8 HOH A 160 760 295 HOH HOH . 
N 8 HOH A 161 761 160 HOH HOH . 
N 8 HOH A 162 762 231 HOH HOH . 
N 8 HOH A 163 763 289 HOH HOH . 
N 8 HOH A 164 764 278 HOH HOH . 
N 8 HOH A 165 765 217 HOH HOH . 
N 8 HOH A 166 766 6 HOH HOH . 
N 8 HOH A 167 767 234 HOH HOH . 
N 8 HOH A 168 768 104 HOH HOH . 
N 8 HOH A 169 769 321 HOH HOH . 
N 8 HOH A 170 770 206 HOH HOH . 
N 8 HOH A 171 771 260 HOH HOH . 
N 8 HOH A 172 772 222 HOH HOH . 
N 8 HOH A 173 773 253 HOH HOH . 
N 8 HOH A 174 774 187 HOH HOH . 
N 8 HOH A 175 775 310 HOH HOH . 
N 8 HOH A 176 776 239 HOH HOH . 
N 8 HOH A 177 777 205 HOH HOH . 
N 8 HOH A 178 778 192 HOH HOH . 
N 8 HOH A 179 779 203 HOH HOH . 
N 8 HOH A 180 780 179 HOH HOH . 
N 8 HOH A 181 781 226 HOH HOH . 
N 8 HOH A 182 782 298 HOH HOH . 
N 8 HOH A 183 783 209 HOH HOH . 
N 8 HOH A 184 784 267 HOH HOH . 
N 8 HOH A 185 785 232 HOH HOH . 
N 8 HOH A 186 786 111 HOH HOH . 
N 8 HOH A 187 787 258 HOH HOH . 
N 8 HOH A 188 788 233 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 35.924 -19.632 29.176 1 78.17 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . D 3 34.98 -20.71 29.151 1 71.28 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . D 3 36.525 -19.446 30.572 1 77.85 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . D 3 37.944 -19.263 30.455 1 79.79 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . D 3 35.896 -18.259 31.318 1 75.89 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . D 3 36.155 -16.96 30.732 1 71.24 ? O3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           471 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#