data_6P3V # _model_server_result.job_id T8dK2pOPUu_aCluF16t1rA _model_server_result.datetime_utc '2025-01-25 07:55:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6P3V # _exptl.entry_id 6P3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.427 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,N-diethyl-2-[(8-fluoro-5-methyl-5H-[1,2,4]triazino[5,6-b]indol-3-yl)sulfanyl]ethan-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6P3V _cell.length_a 174.875 _cell.length_b 174.875 _cell.length_c 121.45 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 121.45 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 121.45 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 121.45 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H20 F N5 S' _chem_comp.formula_weight 333.427 _chem_comp.id NRV _chem_comp.mon_nstd_flag . _chem_comp.name N,N-diethyl-2-[(8-fluoro-5-methyl-5H-[1,2,4]triazino[5,6-b]indol-3-yl)sulfanyl]ethan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F07 C06 NRV sing 246 n n C06 C08 NRV doub 247 n y C06 C05 NRV sing 248 n y C08 C09 NRV sing 249 n y C05 C04 NRV doub 250 n y N23 C10 NRV doub 251 n y N23 N22 NRV sing 252 n y C09 C10 NRV sing 253 n y C09 C03 NRV doub 254 n y C10 C11 NRV sing 255 n y N22 C13 NRV doub 256 n y C04 C03 NRV sing 257 n y C03 N02 NRV sing 258 n y C11 N02 NRV sing 259 n y C11 N12 NRV doub 260 n y C13 N12 NRV sing 261 n y C13 S14 NRV sing 262 n n N02 C01 NRV sing 263 n n S14 C15 NRV sing 264 n n C15 C16 NRV sing 265 n n C16 N17 NRV sing 266 n n C20 N17 NRV sing 267 n n C20 C21 NRV sing 268 n n N17 C18 NRV sing 269 n n C18 C19 NRV sing 270 n n C01 H1 NRV sing 271 n n C01 H2 NRV sing 272 n n C01 H3 NRV sing 273 n n C04 H4 NRV sing 274 n n C05 H5 NRV sing 275 n n C08 H6 NRV sing 276 n n C15 H7 NRV sing 277 n n C15 H8 NRV sing 278 n n C16 H9 NRV sing 279 n n C16 H10 NRV sing 280 n n C18 H12 NRV sing 281 n n C18 H13 NRV sing 282 n n C19 H14 NRV sing 283 n n C19 H15 NRV sing 284 n n C19 H16 NRV sing 285 n n C20 H17 NRV sing 286 n n C20 H18 NRV sing 287 n n C21 H19 NRV sing 288 n n C21 H20 NRV sing 289 n n C21 H21 NRV sing 290 n n # _atom_sites.entry_id 6P3V _atom_sites.fract_transf_matrix[1][1] 0.005718 _atom_sites.fract_transf_matrix[1][2] 0.003302 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NRV A 1 501 502 NRV H99 . C 3 SO4 A 1 502 1 SO4 SO4 . D 4 DMS A 1 503 2 DMS DMS . E 5 HOH A 1 601 189 HOH HOH . E 5 HOH A 2 602 111 HOH HOH . E 5 HOH A 3 603 174 HOH HOH . E 5 HOH A 4 604 31 HOH HOH . E 5 HOH A 5 605 64 HOH HOH . E 5 HOH A 6 606 181 HOH HOH . E 5 HOH A 7 607 23 HOH HOH . E 5 HOH A 8 608 39 HOH HOH . E 5 HOH A 9 609 46 HOH HOH . E 5 HOH A 10 610 188 HOH HOH . E 5 HOH A 11 611 165 HOH HOH . E 5 HOH A 12 612 152 HOH HOH . E 5 HOH A 13 613 184 HOH HOH . E 5 HOH A 14 614 82 HOH HOH . E 5 HOH A 15 615 129 HOH HOH . E 5 HOH A 16 616 10 HOH HOH . E 5 HOH A 17 617 70 HOH HOH . E 5 HOH A 18 618 3 HOH HOH . E 5 HOH A 19 619 42 HOH HOH . E 5 HOH A 20 620 5 HOH HOH . E 5 HOH A 21 621 160 HOH HOH . E 5 HOH A 22 622 136 HOH HOH . E 5 HOH A 23 623 30 HOH HOH . E 5 HOH A 24 624 112 HOH HOH . E 5 HOH A 25 625 173 HOH HOH . E 5 HOH A 26 626 27 HOH HOH . E 5 HOH A 27 627 37 HOH HOH . E 5 HOH A 28 628 61 HOH HOH . E 5 HOH A 29 629 187 HOH HOH . E 5 HOH A 30 630 168 HOH HOH . E 5 HOH A 31 631 66 HOH HOH . E 5 HOH A 32 632 135 HOH HOH . E 5 HOH A 33 633 20 HOH HOH . E 5 HOH A 34 634 194 HOH HOH . E 5 HOH A 35 635 155 HOH HOH . E 5 HOH A 36 636 48 HOH HOH . E 5 HOH A 37 637 14 HOH HOH . E 5 HOH A 38 638 191 HOH HOH . E 5 HOH A 39 639 179 HOH HOH . E 5 HOH A 40 640 161 HOH HOH . E 5 HOH A 41 641 116 HOH HOH . E 5 HOH A 42 642 1 HOH HOH . E 5 HOH A 43 643 175 HOH HOH . E 5 HOH A 44 644 186 HOH HOH . E 5 HOH A 45 645 99 HOH HOH . E 5 HOH A 46 646 118 HOH HOH . E 5 HOH A 47 647 9 HOH HOH . E 5 HOH A 48 648 182 HOH HOH . E 5 HOH A 49 649 180 HOH HOH . E 5 HOH A 50 650 193 HOH HOH . E 5 HOH A 51 651 170 HOH HOH . E 5 HOH A 52 652 185 HOH HOH . E 5 HOH A 53 653 164 HOH HOH . E 5 HOH A 54 654 29 HOH HOH . E 5 HOH A 55 655 57 HOH HOH . E 5 HOH A 56 656 41 HOH HOH . E 5 HOH A 57 657 183 HOH HOH . E 5 HOH A 58 658 33 HOH HOH . E 5 HOH A 59 659 25 HOH HOH . E 5 HOH A 60 660 96 HOH HOH . E 5 HOH A 61 661 84 HOH HOH . E 5 HOH A 62 662 178 HOH HOH . E 5 HOH A 63 663 169 HOH HOH . E 5 HOH A 64 664 163 HOH HOH . E 5 HOH A 65 665 62 HOH HOH . E 5 HOH A 66 666 83 HOH HOH . E 5 HOH A 67 667 69 HOH HOH . E 5 HOH A 68 668 192 HOH HOH . E 5 HOH A 69 669 95 HOH HOH . E 5 HOH A 70 670 162 HOH HOH . E 5 HOH A 71 671 172 HOH HOH . E 5 HOH A 72 672 104 HOH HOH . E 5 HOH A 73 673 12 HOH HOH . E 5 HOH A 74 674 153 HOH HOH . E 5 HOH A 75 675 176 HOH HOH . E 5 HOH A 76 676 190 HOH HOH . E 5 HOH A 77 677 51 HOH HOH . E 5 HOH A 78 678 157 HOH HOH . E 5 HOH A 79 679 171 HOH HOH . E 5 HOH A 80 680 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 NRV . . . B 2 21.731 -11.371 36.52 1 35.63 ? C01 NRV 501 A 1 HETATM 2 N N02 NRV . . . B 2 21.031 -11.876 35.366 1 37 ? N02 NRV 501 A 1 HETATM 3 C C03 NRV . . . B 2 21.488 -12.746 34.414 1 36.78 ? C03 NRV 501 A 1 HETATM 4 C C04 NRV . . . B 2 22.74 -13.389 34.255 1 34.05 ? C04 NRV 501 A 1 HETATM 5 C C05 NRV . . . B 2 22.916 -14.225 33.156 1 33.46 ? C05 NRV 501 A 1 HETATM 6 C C06 NRV . . . B 2 21.892 -14.441 32.198 1 35.35 ? C06 NRV 501 A 1 HETATM 7 F F07 NRV . . . B 2 22.141 -15.276 31.141 1 35.57 ? F07 NRV 501 A 1 HETATM 8 C C08 NRV . . . B 2 20.65 -13.819 32.328 1 35.53 ? C08 NRV 501 A 1 HETATM 9 C C09 NRV . . . B 2 20.472 -12.981 33.452 1 36.5 ? C09 NRV 501 A 1 HETATM 10 C C10 NRV . . . B 2 19.352 -12.184 33.872 1 40.08 ? C10 NRV 501 A 1 HETATM 11 C C11 NRV . . . B 2 19.755 -11.537 35.047 1 38.25 ? C11 NRV 501 A 1 HETATM 12 N N12 NRV . . . B 2 18.857 -10.712 35.648 1 41 ? N12 NRV 501 A 1 HETATM 13 C C13 NRV . . . B 2 17.642 -10.556 35.097 1 43.97 ? C13 NRV 501 A 1 HETATM 14 S S14 NRV . . . B 2 16.502 -9.443 35.943 1 46.85 ? S14 NRV 501 A 1 HETATM 15 C C15 NRV . . . B 2 17.383 -7.847 36.269 1 53.19 ? C15 NRV 501 A 1 HETATM 16 C C16 NRV . . . B 2 18.439 -7.971 37.353 1 53.74 ? C16 NRV 501 A 1 HETATM 17 N N17 NRV . . . B 2 18.178 -7.225 38.617 1 60.59 ? N17 NRV 501 A 1 HETATM 18 C C18 NRV . . . B 2 19.51 -6.983 39.259 1 60.03 ? C18 NRV 501 A 1 HETATM 19 C C19 NRV . . . B 2 20.142 -8.308 39.702 1 58.54 ? C19 NRV 501 A 1 HETATM 20 C C20 NRV . . . B 2 17.441 -5.932 38.441 1 62.24 ? C20 NRV 501 A 1 HETATM 21 C C21 NRV . . . B 2 16.517 -5.611 39.574 1 57.88 ? C21 NRV 501 A 1 HETATM 22 N N22 NRV . . . B 2 17.266 -11.152 33.994 1 45.3 ? N22 NRV 501 A 1 HETATM 23 N N23 NRV . . . B 2 18.122 -11.987 33.361 1 40.25 ? N23 NRV 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #