data_6P41
#
_model_server_result.job_id            TzO_7mdo83-tarJvZ1a18A 
_model_server_result.datetime_utc      '2024-11-28 03:11:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p41 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    6P41 
#
_exptl.entry_id    6P41 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.64 
_cell.angle_gamma         90 
_cell.entry_id            6P41 
_cell.length_a            45.803 
_cell.length_b            112.07 
_cell.length_c            88.327 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P41 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 14 B CYS 14 1_555 F CAB HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
covale ? covale2 B SG CYS 14 B CYS 14 1_555 F CBB HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
covale ? covale3 D SG CYS 14 D CYS 14 1_555 H CAB HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 E FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc2 B NE2 HIS 18 B HIS 18 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc3 B SD MET 80 B MET 80 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc4 C NE2 HIS 175 C HIS 175 1_555 G FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc5 D NE2 HIS 18 D HIS 18 1_555 H FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc6 D SD MET 80 D MET 80 1_555 H FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6P41 
_atom_sites.fract_transf_matrix[1][1]    0.021833 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005701 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008923 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011701 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEM A 1 301 295 HEM HEM . 
F 3 HEM B 1 201 104 HEM HEM . 
G 3 HEM C 1 301 295 HEM HEM . 
H 3 HEM D 1 201 104 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 3 25.936 17.6 19.09 1 101.72 ? CHA HEM 201 B 1 
HETATM 2 C CHB HEM . . . F 3 28.738 14.397 21.433 1 94.76 ? CHB HEM 201 B 1 
HETATM 3 C CHC HEM . . . F 3 28.136 11.223 17.812 1 79.39 ? CHC HEM 201 B 1 
HETATM 4 C CHD HEM . . . F 3 26.412 14.853 15.119 1 85.77 ? CHD HEM 201 B 1 
HETATM 5 C C1A HEM . . . F 3 26.663 16.981 20.085 1 101.5 ? C1A HEM 201 B 1 
HETATM 6 C C2A HEM . . . F 3 26.831 17.441 21.45 1 106.43 ? C2A HEM 201 B 1 
HETATM 7 C C3A HEM . . . F 3 27.604 16.558 22.091 1 109.82 ? C3A HEM 201 B 1 
HETATM 8 C C4A HEM . . . F 3 27.954 15.501 21.163 1 99.42 ? C4A HEM 201 B 1 
HETATM 9 C CMA HEM . . . F 3 28.048 16.64 23.567 1 109.6 ? CMA HEM 201 B 1 
HETATM 10 C CAA HEM . . . F 3 26.23 18.731 22.052 1 112.88 ? CAA HEM 201 B 1 
HETATM 11 C CBA HEM . . . F 3 27.096 19.916 21.634 1 106.33 ? CBA HEM 201 B 1 
HETATM 12 C CGA HEM . . . F 3 26.507 21.21 22.133 1 111.87 ? CGA HEM 201 B 1 
HETATM 13 O O1A HEM . . . F 3 27.192 22.259 22.014 1 108.74 ? O1A HEM 201 B 1 
HETATM 14 O O2A HEM . . . F 3 25.36 21.196 22.65 1 116.56 ? O2A HEM 201 B 1 
HETATM 15 C C1B HEM . . . F 3 28.826 13.254 20.665 1 95.48 ? C1B HEM 201 B 1 
HETATM 16 C C2B HEM . . . F 3 29.564 12.052 20.999 1 94.29 ? C2B HEM 201 B 1 
HETATM 17 C C3B HEM . . . F 3 29.399 11.168 19.994 1 92.5 ? C3B HEM 201 B 1 
HETATM 18 C C4B HEM . . . F 3 28.548 11.791 19 1 85.25 ? C4B HEM 201 B 1 
HETATM 19 C CMB HEM . . . F 3 30.379 11.899 22.303 1 85.79 ? CMB HEM 201 B 1 
HETATM 20 C CAB HEM . . . F 3 29.953 9.729 19.825 1 86.67 ? CAB HEM 201 B 1 
HETATM 21 C CBB HEM . . . F 3 30.683 9.073 20.736 1 86.95 ? CBB HEM 201 B 1 
HETATM 22 C C1C HEM . . . F 3 27.621 11.922 16.74 1 85.98 ? C1C HEM 201 B 1 
HETATM 23 C C2C HEM . . . F 3 27.305 11.387 15.43 1 83 ? C2C HEM 201 B 1 
HETATM 24 C C3C HEM . . . F 3 26.826 12.394 14.671 1 84.35 ? C3C HEM 201 B 1 
HETATM 25 C C4C HEM . . . F 3 26.828 13.593 15.491 1 84.47 ? C4C HEM 201 B 1 
HETATM 26 C CMC HEM . . . F 3 27.516 9.904 15.052 1 81.33 ? CMC HEM 201 B 1 
HETATM 27 C CAC HEM . . . F 3 26.336 12.388 13.196 1 93.82 ? CAC HEM 201 B 1 
HETATM 28 C CBC HEM . . . F 3 26.277 11.309 12.405 1 87.93 ? CBC HEM 201 B 1 
HETATM 29 C C1D HEM . . . F 3 25.964 15.821 15.993 1 87.53 ? C1D HEM 201 B 1 
HETATM 30 C C2D HEM . . . F 3 24.909 16.782 15.75 1 88.67 ? C2D HEM 201 B 1 
HETATM 31 C C3D HEM . . . F 3 24.768 17.54 16.842 1 92.08 ? C3D HEM 201 B 1 
HETATM 32 C C4D HEM . . . F 3 25.737 17.089 17.824 1 93.3 ? C4D HEM 201 B 1 
HETATM 33 C CMD HEM . . . F 3 24.088 16.9 14.449 1 89.45 ? CMD HEM 201 B 1 
HETATM 34 C CAD HEM . . . F 3 23.755 18.696 17.009 1 96 ? CAD HEM 201 B 1 
HETATM 35 C CBD HEM . . . F 3 22.719 18.335 18.07 1 102.27 ? CBD HEM 201 B 1 
HETATM 36 C CGD HEM . . . F 3 21.631 19.376 18.102 1 109.3 ? CGD HEM 201 B 1 
HETATM 37 O O1D HEM . . . F 3 21.721 20.366 17.33 1 101.07 ? O1D HEM 201 B 1 
HETATM 38 O O2D HEM . . . F 3 20.673 19.214 18.901 1 113.57 ? O2D HEM 201 B 1 
HETATM 39 N NA HEM . . . F 3 27.361 15.795 19.95 1 100.44 ? NA HEM 201 B 1 
HETATM 40 N NB HEM . . . F 3 28.22 13.058 19.441 1 90.16 ? NB HEM 201 B 1 
HETATM 41 N NC HEM . . . F 3 27.315 13.266 16.739 1 87.29 ? NC HEM 201 B 1 
HETATM 42 N ND HEM . . . F 3 26.445 16.038 17.27 1 92.25 ? ND HEM 201 B 1 
HETATM 43 FE FE HEM . . . F 3 27.373 14.544 18.331 1 94.21 ? FE HEM 201 B 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#