data_6P41
#
_model_server_result.job_id            ZdPEiyU0WUbHMdfNtmajcQ 
_model_server_result.datetime_utc      '2024-11-24 09:45:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p41 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    6P41 
#
_exptl.entry_id    6P41 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.64 
_cell.angle_gamma         90 
_cell.entry_id            6P41 
_cell.length_a            45.803 
_cell.length_b            112.07 
_cell.length_c            88.327 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P41 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 14 B CYS 14 1_555 F CAB HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
covale ? covale2 B SG CYS 14 B CYS 14 1_555 F CBB HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
covale ? covale3 D SG CYS 14 D CYS 14 1_555 H CAB HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 E FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc2 B NE2 HIS 18 B HIS 18 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc3 B SD MET 80 B MET 80 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc4 C NE2 HIS 175 C HIS 175 1_555 G FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc5 D NE2 HIS 18 D HIS 18 1_555 H FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc6 D SD MET 80 D MET 80 1_555 H FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6P41 
_atom_sites.fract_transf_matrix[1][1]    0.021833 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005701 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008923 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011701 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEM A 1 301 295 HEM HEM . 
F 3 HEM B 1 201 104 HEM HEM . 
G 3 HEM C 1 301 295 HEM HEM . 
H 3 HEM D 1 201 104 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 3 -3.064 26.325 46.023 1 141.86 ? CHA HEM 201 D 1 
HETATM 2 C CHB HEM . . . H 3 -5.634 29.38 48.778 1 127.41 ? CHB HEM 201 D 1 
HETATM 3 C CHC HEM . . . H 3 -4.599 32.929 45.642 1 122.9 ? CHC HEM 201 D 1 
HETATM 4 C CHD HEM . . . H 3 -2.981 29.645 42.47 1 132.3 ? CHD HEM 201 D 1 
HETATM 5 C C1A HEM . . . H 3 -3.764 26.85 47.087 1 142.18 ? C1A HEM 201 D 1 
HETATM 6 C C2A HEM . . . H 3 -4.023 26.199 48.358 1 142.63 ? C2A HEM 201 D 1 
HETATM 7 C C3A HEM . . . H 3 -4.732 27.041 49.115 1 135.95 ? C3A HEM 201 D 1 
HETATM 8 C C4A HEM . . . H 3 -4.949 28.259 48.358 1 132.32 ? C4A HEM 201 D 1 
HETATM 9 C CMA HEM . . . H 3 -5.23 26.761 50.549 1 134.59 ? CMA HEM 201 D 1 
HETATM 10 C CAA HEM . . . H 3 -3.57 24.781 48.773 1 146.4 ? CAA HEM 201 D 1 
HETATM 11 C CBA HEM . . . H 3 -4.406 23.735 48.041 1 145.9 ? CBA HEM 201 D 1 
HETATM 12 C CGA HEM . . . H 3 -3.978 22.352 48.457 1 144.91 ? CGA HEM 201 D 1 
HETATM 13 O O1A HEM . . . H 3 -4.639 21.367 48.036 1 144.23 ? O1A HEM 201 D 1 
HETATM 14 O O2A HEM . . . H 3 -2.977 22.232 49.21 1 142.68 ? O2A HEM 201 D 1 
HETATM 15 C C1B HEM . . . H 3 -5.619 30.609 48.152 1 124.37 ? C1B HEM 201 D 1 
HETATM 16 C C2B HEM . . . H 3 -6.354 31.791 48.559 1 121.63 ? C2B HEM 201 D 1 
HETATM 17 C C3B HEM . . . H 3 -6.071 32.779 47.687 1 118.93 ? C3B HEM 201 D 1 
HETATM 18 C C4B HEM . . . H 3 -5.143 32.245 46.709 1 120.74 ? C4B HEM 201 D 1 
HETATM 19 C CMB HEM . . . H 3 -7.288 31.823 49.791 1 121.72 ? CMB HEM 201 D 1 
HETATM 20 C CAB HEM . . . H 3 -6.569 34.248 47.641 1 116.84 ? CAB HEM 201 D 1 
HETATM 21 C CBB HEM . . . H 3 -7.347 34.826 48.564 1 109.06 ? CBB HEM 201 D 1 
HETATM 22 C C1C HEM . . . H 3 -4.149 32.353 44.473 1 127.79 ? C1C HEM 201 D 1 
HETATM 23 C C2C HEM . . . H 3 -3.962 33.023 43.201 1 124.56 ? C2C HEM 201 D 1 
HETATM 24 C C3C HEM . . . H 3 -3.515 32.111 42.313 1 126.11 ? C3C HEM 201 D 1 
HETATM 25 C C4C HEM . . . H 3 -3.405 30.842 43.008 1 132.68 ? C4C HEM 201 D 1 
HETATM 26 C CMC HEM . . . H 3 -4.257 34.528 42.992 1 116.18 ? CMC HEM 201 D 1 
HETATM 27 C CAC HEM . . . H 3 -3.148 32.271 40.813 1 120.58 ? CAC HEM 201 D 1 
HETATM 28 C CBC HEM . . . H 3 -3.156 33.428 40.141 1 115.75 ? CBC HEM 201 D 1 
HETATM 29 C C1D HEM . . . H 3 -2.749 28.49 43.188 1 136.27 ? C1D HEM 201 D 1 
HETATM 30 C C2D HEM . . . H 3 -1.951 27.359 42.765 1 133.52 ? C2D HEM 201 D 1 
HETATM 31 C C3D HEM . . . H 3 -1.967 26.445 43.739 1 135.47 ? C3D HEM 201 D 1 
HETATM 32 C C4D HEM . . . H 3 -2.783 26.958 44.827 1 139.99 ? C4D HEM 201 D 1 
HETATM 33 C CMD HEM . . . H 3 -1.201 27.231 41.421 1 132.26 ? CMD HEM 201 D 1 
HETATM 34 C CAD HEM . . . H 3 -1.238 25.084 43.686 1 135.8 ? CAD HEM 201 D 1 
HETATM 35 C CBD HEM . . . H 3 -0.289 24.974 44.874 1 132.83 ? CBD HEM 201 D 1 
HETATM 36 C CGD HEM . . . H 3 1.03 24.404 44.437 1 133.11 ? CGD HEM 201 D 1 
HETATM 37 O O1D HEM . . . H 3 1.076 23.69 43.401 1 139.56 ? O1D HEM 201 D 1 
HETATM 38 O O2D HEM . . . H 3 2.034 24.67 45.142 1 128.5 ? O2D HEM 201 D 1 
HETATM 39 N NA HEM . . . H 3 -4.342 28.104 47.126 1 136.2 ? NA HEM 201 D 1 
HETATM 40 N NB HEM . . . H 3 -4.892 30.925 47.023 1 122.69 ? NB HEM 201 D 1 
HETATM 41 N NC HEM . . . H 3 -3.799 31.029 44.317 1 136.11 ? NC HEM 201 D 1 
HETATM 42 N ND HEM . . . H 3 -3.24 28.208 44.45 1 142.07 ? ND HEM 201 D 1 
HETATM 43 FE FE HEM . . . H 3 -3.989 29.592 45.765 1 139.99 ? FE HEM 201 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#