data_6P42
#
_model_server_result.job_id            mK79woTJ44jQ_YXMKzoGwQ 
_model_server_result.datetime_utc      '2024-11-06 00:38:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p42 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    6P42 
#
_exptl.entry_id    6P42 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.63 
_cell.angle_gamma         90 
_cell.entry_id            6P42 
_cell.length_a            45.926 
_cell.length_b            111.918 
_cell.length_c            88.747 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P42 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 14 B CYS 14 1_555 F CBB HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.66 ? 
covale ? covale2 B SG CYS 17 B CYS 17 1_555 F CAC HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
covale ? covale3 D SG CYS 14 D CYS 14 1_555 H CAB HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
covale ? covale4 D SG CYS 14 D CYS 14 1_555 H CBB HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? 
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 E FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc2 B NE2 HIS 18 B HIS 18 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc3 B SD MET 80 B MET 80 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc4 C NE2 HIS 175 C HIS 175 1_555 G FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc5 D NE2 HIS 18 D HIS 18 1_555 H FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc6 D SD MET 80 D MET 80 1_555 H FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6P42 
_atom_sites.fract_transf_matrix[1][1]    0.021774 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00609 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008935 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEM A 1 301 295 HEM HEM . 
F 3 HEM B 1 201 104 HEM HEM . 
G 3 HEM C 1 301 295 HEM HEM . 
H 3 HEM D 1 201 104 HEM HEM . 
I 4 HOH A 1 401 5 HOH HOH . 
J 4 HOH B 1 301 1 HOH HOH . 
K 4 HOH C 1 401 2 HOH HOH . 
K 4 HOH C 2 402 3 HOH HOH . 
K 4 HOH C 3 403 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 3 14.854 0.473 3.504 1 83.53 ? CHA HEM 201 D 1 
HETATM 2 C CHB HEM . . . H 3 18.313 -2.005 5.853 1 89.13 ? CHB HEM 201 D 1 
HETATM 3 C CHC HEM . . . H 3 17.098 -5.778 3.082 1 84.11 ? CHC HEM 201 D 1 
HETATM 4 C CHD HEM . . . H 3 15.421 -2.621 -0.174 1 78.31 ? CHD HEM 201 D 1 
HETATM 5 C C1A HEM . . . H 3 15.71 0.039 4.494 1 89.84 ? C1A HEM 201 D 1 
HETATM 6 C C2A HEM . . . H 3 15.776 0.539 5.846 1 90.5 ? C2A HEM 201 D 1 
HETATM 7 C C3A HEM . . . H 3 16.73 -0.124 6.505 1 88.38 ? C3A HEM 201 D 1 
HETATM 8 C C4A HEM . . . H 3 17.311 -1.09 5.595 1 89.17 ? C4A HEM 201 D 1 
HETATM 9 C CMA HEM . . . H 3 17.133 0.099 7.978 1 90.92 ? CMA HEM 201 D 1 
HETATM 10 C CAA HEM . . . H 3 14.902 1.674 6.401 1 96.49 ? CAA HEM 201 D 1 
HETATM 11 C CBA HEM . . . H 3 15.505 2.968 5.872 1 100.82 ? CBA HEM 201 D 1 
HETATM 12 C CGA HEM . . . H 3 14.985 4.115 6.691 1 108.26 ? CGA HEM 201 D 1 
HETATM 13 O O1A HEM . . . H 3 15.829 4.865 7.256 1 113.89 ? O1A HEM 201 D 1 
HETATM 14 O O2A HEM . . . H 3 13.735 4.269 6.784 1 110.99 ? O2A HEM 201 D 1 
HETATM 15 C C1B HEM . . . H 3 18.254 -3.302 5.385 1 84.22 ? C1B HEM 201 D 1 
HETATM 16 C C2B HEM . . . H 3 18.892 -4.484 5.931 1 80.32 ? C2B HEM 201 D 1 
HETATM 17 C C3B HEM . . . H 3 18.534 -5.532 5.158 1 76.84 ? C3B HEM 201 D 1 
HETATM 18 C C4B HEM . . . H 3 17.677 -5.04 4.099 1 80.43 ? C4B HEM 201 D 1 
HETATM 19 C CMB HEM . . . H 3 19.789 -4.461 7.19 1 81.36 ? CMB HEM 201 D 1 
HETATM 20 C CAB HEM . . . H 3 18.924 -7.026 5.257 1 78.92 ? CAB HEM 201 D 1 
HETATM 21 C CBB HEM . . . H 3 19.955 -7.481 5.973 1 80.22 ? CBB HEM 201 D 1 
HETATM 22 C C1C HEM . . . H 3 16.64 -5.259 1.884 1 86.63 ? C1C HEM 201 D 1 
HETATM 23 C C2C HEM . . . H 3 16.47 -5.965 0.626 1 77.03 ? C2C HEM 201 D 1 
HETATM 24 C C3C HEM . . . H 3 16.004 -5.086 -0.286 1 76.22 ? C3C HEM 201 D 1 
HETATM 25 C C4C HEM . . . H 3 15.865 -3.803 0.379 1 72.48 ? C4C HEM 201 D 1 
HETATM 26 C CMC HEM . . . H 3 16.796 -7.466 0.449 1 74.98 ? CMC HEM 201 D 1 
HETATM 27 C CAC HEM . . . H 3 15.652 -5.302 -1.784 1 77.66 ? CAC HEM 201 D 1 
HETATM 28 C CBC HEM . . . H 3 15.676 -6.478 -2.425 1 76.63 ? CBC HEM 201 D 1 
HETATM 29 C C1D HEM . . . H 3 14.991 -1.534 0.56 1 86.71 ? C1D HEM 201 D 1 
HETATM 30 C C2D HEM . . . H 3 14.084 -0.488 0.126 1 88.88 ? C2D HEM 201 D 1 
HETATM 31 C C3D HEM . . . H 3 13.914 0.372 1.137 1 91.09 ? C3D HEM 201 D 1 
HETATM 32 C C4D HEM . . . H 3 14.716 -0.098 2.258 1 82.12 ? C4D HEM 201 D 1 
HETATM 33 C CMD HEM . . . H 3 13.421 -0.384 -1.263 1 89.92 ? CMD HEM 201 D 1 
HETATM 34 C CAD HEM . . . H 3 13.021 1.636 1.084 1 92.09 ? CAD HEM 201 D 1 
HETATM 35 C CBD HEM . . . H 3 12.042 1.622 2.257 1 92.23 ? CBD HEM 201 D 1 
HETATM 36 C CGD HEM . . . H 3 10.903 2.577 2.022 1 94.6 ? CGD HEM 201 D 1 
HETATM 37 O O1D HEM . . . H 3 10.926 3.298 0.992 1 98.19 ? O1D HEM 201 D 1 
HETATM 38 O O2D HEM . . . H 3 9.971 2.611 2.868 1 96.51 ? O2D HEM 201 D 1 
HETATM 39 N NA HEM . . . H 3 16.656 -0.961 4.384 1 89.66 ? NA HEM 201 D 1 
HETATM 40 N NB HEM . . . H 3 17.528 -3.684 4.279 1 79.96 ? NB HEM 201 D 1 
HETATM 41 N NC HEM . . . H 3 16.261 -3.946 1.692 1 88.32 ? NC HEM 201 D 1 
HETATM 42 N ND HEM . . . H 3 15.351 -1.259 1.867 1 86.28 ? ND HEM 201 D 1 
HETATM 43 FE FE HEM . . . H 3 16.388 -2.486 3.162 1 78.27 ? FE HEM 201 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#