data_6P4W # _model_server_result.job_id 0A-kvqvNqj4crwbDWkxkng _model_server_result.datetime_utc '2024-11-22 20:21:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 6P4W # _exptl.entry_id 6P4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 83.09 _cell.angle_beta 81.15 _cell.angle_gamma 90.17 _cell.entry_id 6P4W _cell.length_a 56.415 _cell.length_b 101.369 _cell.length_c 114.476 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,CA,DA 1 1 C,D,R,S,T,U,V,W,X,Y,Z,AA,BA,EA,FA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 T N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6P4W _atom_sites.fract_transf_matrix[1][1] 0.017726 _atom_sites.fract_transf_matrix[1][2] 0.000054 _atom_sites.fract_transf_matrix[1][3] -0.002788 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009865 _atom_sites.fract_transf_matrix[2][3] -0.001214 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PO4 A 1 501 1 PO4 PO4 . F 4 MG A 1 502 3 MG MG . G 5 GOL A 1 503 5 GOL GOL . H 6 CL A 1 504 7 CL CL . I 6 CL A 1 505 9 CL CL . J 6 CL A 1 506 10 CL CL . K 6 CL A 1 507 12 CL CL . L 6 CL A 1 508 17 CL CL . M 6 CL A 1 509 18 CL CL . N 6 CL A 1 510 19 CL CL . O 6 CL A 1 511 23 CL CL . P 6 CL B 1 401 16 CL CL . Q 6 CL B 1 402 20 CL CL . R 3 PO4 C 1 501 2 PO4 PO4 . S 4 MG C 1 502 4 MG MG . T 5 GOL C 1 503 6 GOL GOL . U 6 CL C 1 504 8 CL CL . V 6 CL C 1 505 11 CL CL . W 6 CL C 1 506 13 CL CL . X 6 CL C 1 507 14 CL CL . Y 6 CL C 1 508 15 CL CL . Z 6 CL C 1 509 21 CL CL . AA 6 CL C 1 510 24 CL CL . BA 6 CL D 1 401 22 CL CL . CA 7 HOH A 1 601 64 HOH HOH . CA 7 HOH A 2 602 71 HOH HOH . CA 7 HOH A 3 603 48 HOH HOH . CA 7 HOH A 4 604 54 HOH HOH . CA 7 HOH A 5 605 37 HOH HOH . CA 7 HOH A 6 606 67 HOH HOH . CA 7 HOH A 7 607 65 HOH HOH . CA 7 HOH A 8 608 50 HOH HOH . CA 7 HOH A 9 609 92 HOH HOH . CA 7 HOH A 10 610 3 HOH HOH . CA 7 HOH A 11 611 68 HOH HOH . CA 7 HOH A 12 612 6 HOH HOH . CA 7 HOH A 13 613 75 HOH HOH . CA 7 HOH A 14 614 76 HOH HOH . CA 7 HOH A 15 615 69 HOH HOH . CA 7 HOH A 16 616 73 HOH HOH . CA 7 HOH A 17 617 74 HOH HOH . CA 7 HOH A 18 618 52 HOH HOH . CA 7 HOH A 19 619 70 HOH HOH . CA 7 HOH A 20 620 77 HOH HOH . CA 7 HOH A 21 621 25 HOH HOH . CA 7 HOH A 22 622 72 HOH HOH . CA 7 HOH A 23 623 49 HOH HOH . CA 7 HOH A 24 624 57 HOH HOH . CA 7 HOH A 25 625 47 HOH HOH . CA 7 HOH A 26 626 83 HOH HOH . CA 7 HOH A 27 627 95 HOH HOH . CA 7 HOH A 28 628 9 HOH HOH . CA 7 HOH A 29 629 66 HOH HOH . CA 7 HOH A 30 630 26 HOH HOH . CA 7 HOH A 31 631 27 HOH HOH . CA 7 HOH A 32 632 28 HOH HOH . DA 7 HOH B 1 501 96 HOH HOH . DA 7 HOH B 2 502 90 HOH HOH . DA 7 HOH B 3 503 30 HOH HOH . DA 7 HOH B 4 504 43 HOH HOH . DA 7 HOH B 5 505 45 HOH HOH . DA 7 HOH B 6 506 11 HOH HOH . DA 7 HOH B 7 507 12 HOH HOH . DA 7 HOH B 8 508 23 HOH HOH . DA 7 HOH B 9 509 24 HOH HOH . DA 7 HOH B 10 510 94 HOH HOH . DA 7 HOH B 11 511 82 HOH HOH . DA 7 HOH B 12 512 5 HOH HOH . DA 7 HOH B 13 513 33 HOH HOH . DA 7 HOH B 14 514 53 HOH HOH . DA 7 HOH B 15 515 46 HOH HOH . DA 7 HOH B 16 516 32 HOH HOH . DA 7 HOH B 17 517 63 HOH HOH . DA 7 HOH B 18 518 55 HOH HOH . DA 7 HOH B 19 519 41 HOH HOH . DA 7 HOH B 20 520 10 HOH HOH . DA 7 HOH B 21 521 31 HOH HOH . DA 7 HOH B 22 522 40 HOH HOH . DA 7 HOH B 23 523 29 HOH HOH . DA 7 HOH B 24 524 44 HOH HOH . DA 7 HOH B 25 525 56 HOH HOH . DA 7 HOH B 26 526 91 HOH HOH . DA 7 HOH B 27 527 42 HOH HOH . EA 7 HOH C 1 601 35 HOH HOH . EA 7 HOH C 2 602 38 HOH HOH . EA 7 HOH C 3 603 4 HOH HOH . EA 7 HOH C 4 604 21 HOH HOH . EA 7 HOH C 5 605 1 HOH HOH . EA 7 HOH C 6 606 17 HOH HOH . EA 7 HOH C 7 607 14 HOH HOH . EA 7 HOH C 8 608 2 HOH HOH . EA 7 HOH C 9 609 88 HOH HOH . EA 7 HOH C 10 610 78 HOH HOH . EA 7 HOH C 11 611 15 HOH HOH . EA 7 HOH C 12 612 18 HOH HOH . EA 7 HOH C 13 613 80 HOH HOH . EA 7 HOH C 14 614 39 HOH HOH . EA 7 HOH C 15 615 79 HOH HOH . EA 7 HOH C 16 616 36 HOH HOH . EA 7 HOH C 17 617 16 HOH HOH . EA 7 HOH C 18 618 86 HOH HOH . EA 7 HOH C 19 619 8 HOH HOH . EA 7 HOH C 20 620 13 HOH HOH . EA 7 HOH C 21 621 20 HOH HOH . EA 7 HOH C 22 622 34 HOH HOH . EA 7 HOH C 23 623 22 HOH HOH . EA 7 HOH C 24 624 7 HOH HOH . EA 7 HOH C 25 625 81 HOH HOH . EA 7 HOH C 26 626 19 HOH HOH . FA 7 HOH D 1 501 87 HOH HOH . FA 7 HOH D 2 502 61 HOH HOH . FA 7 HOH D 3 503 58 HOH HOH . FA 7 HOH D 4 504 84 HOH HOH . FA 7 HOH D 5 505 59 HOH HOH . FA 7 HOH D 6 506 60 HOH HOH . FA 7 HOH D 7 507 93 HOH HOH . FA 7 HOH D 8 508 89 HOH HOH . FA 7 HOH D 9 509 51 HOH HOH . FA 7 HOH D 10 510 62 HOH HOH . FA 7 HOH D 11 511 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 23.398 -32.493 45.1 1 102.32 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . G 5 24.446 -33.1 44.375 1 83.2 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . G 5 22.486 -31.536 44.174 1 103.58 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . G 5 23.155 -30.386 43.67 1 82.77 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . G 5 21.739 -32.448 43.079 1 97.22 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . G 5 20.455 -32.826 43.58 1 71.63 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #