data_6P54 # _model_server_result.job_id 1c4E6SQCrfhOPEhXBoTiUw _model_server_result.datetime_utc '2024-11-22 17:42:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6P54 # _exptl.entry_id 6P54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.429 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CEFOTAXIME,C3' cleaved,open,bound form" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.34 _cell.angle_gamma 90 _cell.entry_id 6P54 _cell.length_a 43.223 _cell.length_b 78.485 _cell.length_c 87.608 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 65 A SER 310 1_555 C C NZV . A NZV 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 B OG SER 65 B SER 310 1_555 D C8 CEF . B CEF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? # _chem_comp.formula 'C14 H15 N5 O5 S2' _chem_comp.formula_weight 397.429 _chem_comp.id CEF _chem_comp.mon_nstd_flag . _chem_comp.name "CEFOTAXIME, C3' cleaved, open, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 CEF sing 127 n n S1 C6 CEF sing 128 n n C1 C2 CEF sing 129 n n C1 H1 CEF sing 130 n n C1 H2 CEF sing 131 n n C2 C3 CEF doub 132 n n C2 C4 CEF sing 133 n n C3 H3 CEF sing 134 n n C3 H4 CEF sing 135 n n C4 C5 CEF sing 136 n n C4 N1 CEF doub 137 n n C5 O1 CEF doub 138 n n C5 O2 CEF sing 139 n n O2 H5 CEF sing 140 n n N1 C6 CEF sing 141 n n C6 C7 CEF sing 142 n n C6 H6 CEF sing 143 n n C7 C8 CEF sing 144 n n C7 N2 CEF sing 145 n n C7 H7 CEF sing 146 n n C8 O3 CEF doub 147 n n C8 H8 CEF sing 148 n n N2 C9 CEF sing 149 n n N2 H9 CEF sing 150 n n C9 O4 CEF doub 151 n n C9 C10 CEF sing 152 n n C10 N3 CEF doub 153 z n C10 C12 CEF sing 154 n n N3 O5 CEF sing 155 n n O5 C11 CEF sing 156 n n C11 H10 CEF sing 157 n n C11 H11 CEF sing 158 n n C11 H12 CEF sing 159 n n C12 C13 CEF doub 160 n y C12 N5 CEF sing 161 n y C13 S2 CEF sing 162 n y C13 H13 CEF sing 163 n n S2 C14 CEF sing 164 n y C14 N4 CEF sing 165 n n C14 N5 CEF doub 166 n y N4 H14 CEF sing 167 n n N4 H15 CEF sing 168 n n # _atom_sites.entry_id 6P54 _atom_sites.fract_transf_matrix[1][1] 0.023136 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00054 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NZV A 1 600 600 NZV yyy . D 3 CEF B 1 601 600 CEF zzz . E 4 9F2 B 1 602 600 9F2 xxx . F 5 PEG B 1 603 1 PEG PEG . G 6 HOH A 1 701 130 HOH HOH . G 6 HOH A 2 702 197 HOH HOH . G 6 HOH A 3 703 116 HOH HOH . G 6 HOH A 4 704 53 HOH HOH . G 6 HOH A 5 705 108 HOH HOH . G 6 HOH A 6 706 88 HOH HOH . G 6 HOH A 7 707 207 HOH HOH . G 6 HOH A 8 708 170 HOH HOH . G 6 HOH A 9 709 132 HOH HOH . G 6 HOH A 10 710 69 HOH HOH . G 6 HOH A 11 711 123 HOH HOH . G 6 HOH A 12 712 107 HOH HOH . G 6 HOH A 13 713 173 HOH HOH . G 6 HOH A 14 714 3 HOH HOH . G 6 HOH A 15 715 165 HOH HOH . G 6 HOH A 16 716 133 HOH HOH . G 6 HOH A 17 717 28 HOH HOH . G 6 HOH A 18 718 87 HOH HOH . G 6 HOH A 19 719 198 HOH HOH . G 6 HOH A 20 720 15 HOH HOH . G 6 HOH A 21 721 42 HOH HOH . G 6 HOH A 22 722 55 HOH HOH . G 6 HOH A 23 723 113 HOH HOH . G 6 HOH A 24 724 142 HOH HOH . G 6 HOH A 25 725 26 HOH HOH . G 6 HOH A 26 726 101 HOH HOH . G 6 HOH A 27 727 29 HOH HOH . G 6 HOH A 28 728 80 HOH HOH . G 6 HOH A 29 729 205 HOH HOH . G 6 HOH A 30 730 73 HOH HOH . G 6 HOH A 31 731 89 HOH HOH . G 6 HOH A 32 732 36 HOH HOH . G 6 HOH A 33 733 75 HOH HOH . G 6 HOH A 34 734 54 HOH HOH . G 6 HOH A 35 735 48 HOH HOH . G 6 HOH A 36 736 21 HOH HOH . G 6 HOH A 37 737 62 HOH HOH . G 6 HOH A 38 738 126 HOH HOH . G 6 HOH A 39 739 99 HOH HOH . G 6 HOH A 40 740 144 HOH HOH . G 6 HOH A 41 741 188 HOH HOH . G 6 HOH A 42 742 7 HOH HOH . G 6 HOH A 43 743 143 HOH HOH . G 6 HOH A 44 744 151 HOH HOH . G 6 HOH A 45 745 16 HOH HOH . G 6 HOH A 46 746 65 HOH HOH . G 6 HOH A 47 747 17 HOH HOH . G 6 HOH A 48 748 49 HOH HOH . G 6 HOH A 49 749 109 HOH HOH . G 6 HOH A 50 750 96 HOH HOH . G 6 HOH A 51 751 158 HOH HOH . G 6 HOH A 52 752 45 HOH HOH . G 6 HOH A 53 753 152 HOH HOH . G 6 HOH A 54 754 98 HOH HOH . G 6 HOH A 55 755 94 HOH HOH . G 6 HOH A 56 756 39 HOH HOH . G 6 HOH A 57 757 33 HOH HOH . G 6 HOH A 58 758 150 HOH HOH . G 6 HOH A 59 759 66 HOH HOH . G 6 HOH A 60 760 147 HOH HOH . G 6 HOH A 61 761 119 HOH HOH . G 6 HOH A 62 762 160 HOH HOH . G 6 HOH A 63 763 68 HOH HOH . G 6 HOH A 64 764 2 HOH HOH . G 6 HOH A 65 765 82 HOH HOH . G 6 HOH A 66 766 50 HOH HOH . G 6 HOH A 67 767 154 HOH HOH . G 6 HOH A 68 768 122 HOH HOH . G 6 HOH A 69 769 153 HOH HOH . G 6 HOH A 70 770 84 HOH HOH . G 6 HOH A 71 771 138 HOH HOH . G 6 HOH A 72 772 149 HOH HOH . G 6 HOH A 73 773 157 HOH HOH . G 6 HOH A 74 774 97 HOH HOH . G 6 HOH A 75 775 85 HOH HOH . G 6 HOH A 76 776 22 HOH HOH . G 6 HOH A 77 777 104 HOH HOH . G 6 HOH A 78 778 4 HOH HOH . G 6 HOH A 79 779 131 HOH HOH . G 6 HOH A 80 780 56 HOH HOH . G 6 HOH A 81 781 106 HOH HOH . G 6 HOH A 82 782 166 HOH HOH . G 6 HOH A 83 783 79 HOH HOH . G 6 HOH A 84 784 137 HOH HOH . G 6 HOH A 85 785 19 HOH HOH . G 6 HOH A 86 786 59 HOH HOH . G 6 HOH A 87 787 181 HOH HOH . G 6 HOH A 88 788 44 HOH HOH . G 6 HOH A 89 789 115 HOH HOH . G 6 HOH A 90 790 10 HOH HOH . G 6 HOH A 91 791 145 HOH HOH . G 6 HOH A 92 792 171 HOH HOH . G 6 HOH A 93 793 25 HOH HOH . G 6 HOH A 94 794 175 HOH HOH . G 6 HOH A 95 795 46 HOH HOH . G 6 HOH A 96 796 135 HOH HOH . G 6 HOH A 97 797 169 HOH HOH . G 6 HOH A 98 798 189 HOH HOH . G 6 HOH A 99 799 191 HOH HOH . G 6 HOH A 100 800 125 HOH HOH . G 6 HOH A 101 801 168 HOH HOH . G 6 HOH A 102 802 164 HOH HOH . G 6 HOH A 103 803 141 HOH HOH . G 6 HOH A 104 804 190 HOH HOH . G 6 HOH A 105 805 105 HOH HOH . G 6 HOH A 106 806 167 HOH HOH . H 6 HOH B 1 701 95 HOH HOH . H 6 HOH B 2 702 37 HOH HOH . H 6 HOH B 3 703 23 HOH HOH . H 6 HOH B 4 704 112 HOH HOH . H 6 HOH B 5 705 201 HOH HOH . H 6 HOH B 6 706 192 HOH HOH . H 6 HOH B 7 707 47 HOH HOH . H 6 HOH B 8 708 206 HOH HOH . H 6 HOH B 9 709 31 HOH HOH . H 6 HOH B 10 710 183 HOH HOH . H 6 HOH B 11 711 34 HOH HOH . H 6 HOH B 12 712 172 HOH HOH . H 6 HOH B 13 713 20 HOH HOH . H 6 HOH B 14 714 128 HOH HOH . H 6 HOH B 15 715 124 HOH HOH . H 6 HOH B 16 716 193 HOH HOH . H 6 HOH B 17 717 194 HOH HOH . H 6 HOH B 18 718 12 HOH HOH . H 6 HOH B 19 719 18 HOH HOH . H 6 HOH B 20 720 129 HOH HOH . H 6 HOH B 21 721 127 HOH HOH . H 6 HOH B 22 722 146 HOH HOH . H 6 HOH B 23 723 103 HOH HOH . H 6 HOH B 24 724 202 HOH HOH . H 6 HOH B 25 725 86 HOH HOH . H 6 HOH B 26 726 27 HOH HOH . H 6 HOH B 27 727 210 HOH HOH . H 6 HOH B 28 728 156 HOH HOH . H 6 HOH B 29 729 60 HOH HOH . H 6 HOH B 30 730 102 HOH HOH . H 6 HOH B 31 731 90 HOH HOH . H 6 HOH B 32 732 74 HOH HOH . H 6 HOH B 33 733 195 HOH HOH . H 6 HOH B 34 734 118 HOH HOH . H 6 HOH B 35 735 93 HOH HOH . H 6 HOH B 36 736 121 HOH HOH . H 6 HOH B 37 737 111 HOH HOH . H 6 HOH B 38 738 71 HOH HOH . H 6 HOH B 39 739 136 HOH HOH . H 6 HOH B 40 740 83 HOH HOH . H 6 HOH B 41 741 52 HOH HOH . H 6 HOH B 42 742 1 HOH HOH . H 6 HOH B 43 743 180 HOH HOH . H 6 HOH B 44 744 57 HOH HOH . H 6 HOH B 45 745 187 HOH HOH . H 6 HOH B 46 746 100 HOH HOH . H 6 HOH B 47 747 13 HOH HOH . H 6 HOH B 48 748 41 HOH HOH . H 6 HOH B 49 749 200 HOH HOH . H 6 HOH B 50 750 78 HOH HOH . H 6 HOH B 51 751 134 HOH HOH . H 6 HOH B 52 752 6 HOH HOH . H 6 HOH B 53 753 67 HOH HOH . H 6 HOH B 54 754 35 HOH HOH . H 6 HOH B 55 755 63 HOH HOH . H 6 HOH B 56 756 58 HOH HOH . H 6 HOH B 57 757 161 HOH HOH . H 6 HOH B 58 758 51 HOH HOH . H 6 HOH B 59 759 203 HOH HOH . H 6 HOH B 60 760 148 HOH HOH . H 6 HOH B 61 761 176 HOH HOH . H 6 HOH B 62 762 162 HOH HOH . H 6 HOH B 63 763 196 HOH HOH . H 6 HOH B 64 764 9 HOH HOH . H 6 HOH B 65 765 185 HOH HOH . H 6 HOH B 66 766 81 HOH HOH . H 6 HOH B 67 767 163 HOH HOH . H 6 HOH B 68 768 70 HOH HOH . H 6 HOH B 69 769 117 HOH HOH . H 6 HOH B 70 770 61 HOH HOH . H 6 HOH B 71 771 91 HOH HOH . H 6 HOH B 72 772 24 HOH HOH . H 6 HOH B 73 773 199 HOH HOH . H 6 HOH B 74 774 155 HOH HOH . H 6 HOH B 75 775 184 HOH HOH . H 6 HOH B 76 776 72 HOH HOH . H 6 HOH B 77 777 11 HOH HOH . H 6 HOH B 78 778 186 HOH HOH . H 6 HOH B 79 779 38 HOH HOH . H 6 HOH B 80 780 5 HOH HOH . H 6 HOH B 81 781 32 HOH HOH . H 6 HOH B 82 782 30 HOH HOH . H 6 HOH B 83 783 204 HOH HOH . H 6 HOH B 84 784 77 HOH HOH . H 6 HOH B 85 785 178 HOH HOH . H 6 HOH B 86 786 64 HOH HOH . H 6 HOH B 87 787 209 HOH HOH . H 6 HOH B 88 788 208 HOH HOH . H 6 HOH B 89 789 110 HOH HOH . H 6 HOH B 90 790 14 HOH HOH . H 6 HOH B 91 791 8 HOH HOH . H 6 HOH B 92 792 179 HOH HOH . H 6 HOH B 93 793 40 HOH HOH . H 6 HOH B 94 794 43 HOH HOH . H 6 HOH B 95 795 174 HOH HOH . H 6 HOH B 96 796 114 HOH HOH . H 6 HOH B 97 797 177 HOH HOH . H 6 HOH B 98 798 120 HOH HOH . H 6 HOH B 99 799 139 HOH HOH . H 6 HOH B 100 800 92 HOH HOH . H 6 HOH B 101 801 76 HOH HOH . H 6 HOH B 102 802 182 HOH HOH . H 6 HOH B 103 803 140 HOH HOH . H 6 HOH B 104 804 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 CEF . . . D 3 19.225 -22.111 34.15 1 42.71 ? S1 CEF 601 B 1 HETATM 2 C C1 CEF . . . D 3 18.471 -23.111 35.4 1 41.98 ? C1 CEF 601 B 1 HETATM 3 C C2 CEF . . . D 3 18.354 -22.407 36.741 1 40.83 ? C2 CEF 601 B 1 HETATM 4 C C3 CEF . . . D 3 18.11 -23.132 37.819 1 42.74 ? C3 CEF 601 B 1 HETATM 5 C C4 CEF . . . D 3 18.462 -20.961 36.868 1 40.72 ? C4 CEF 601 B 1 HETATM 6 C C5 CEF . . . D 3 18.006 -20.237 38.046 1 43.15 ? C5 CEF 601 B 1 HETATM 7 O O1 CEF . . . D 3 16.757 -20.076 38.211 1 40.5 ? O1 CEF 601 B 1 HETATM 8 O O2 CEF . . . D 3 18.892 -19.784 38.806 1 38.87 ? O2 CEF 601 B 1 HETATM 9 N N1 CEF . . . D 3 18.943 -20.266 35.939 1 40.09 ? N1 CEF 601 B 1 HETATM 10 C C6 CEF . . . D 3 18.522 -20.556 34.58 1 38.57 ? C6 CEF 601 B 1 HETATM 11 C C7 CEF . . . D 3 18.926 -19.433 33.628 1 32.33 ? C7 CEF 601 B 1 HETATM 12 C C8 CEF . . . D 3 18.381 -18.109 34.125 1 31.26 ? C8 CEF 601 B 1 HETATM 13 O O3 CEF . . . D 3 18.957 -17.455 35.006 1 26.44 ? O3 CEF 601 B 1 HETATM 14 N N2 CEF . . . D 3 20.326 -19.117 33.387 1 29.72 ? N2 CEF 601 B 1 HETATM 15 C C9 CEF . . . D 3 20.99 -19.519 32.306 1 31.96 ? C9 CEF 601 B 1 HETATM 16 O O4 CEF . . . D 3 20.542 -20.284 31.483 1 30.02 ? O4 CEF 601 B 1 HETATM 17 C C10 CEF . . . D 3 22.336 -18.979 32.144 1 34.16 ? C10 CEF 601 B 1 HETATM 18 N N3 CEF . . . D 3 23.366 -19.61 32.532 1 42.11 ? N3 CEF 601 B 1 HETATM 19 O O5 CEF . . . D 3 23.304 -20.781 33.027 1 51.77 ? O5 CEF 601 B 1 HETATM 20 C C11 CEF . . . D 3 23.128 -21.028 34.431 1 50.02 ? C11 CEF 601 B 1 HETATM 21 C C12 CEF . . . D 3 22.435 -17.591 31.605 1 30.26 ? C12 CEF 601 B 1 HETATM 22 C C13 CEF . . . D 3 21.355 -16.842 31.145 1 28.37 ? C13 CEF 601 B 1 HETATM 23 S S2 CEF . . . D 3 21.719 -15.238 30.63 1 27.73 ? S2 CEF 601 B 1 HETATM 24 C C14 CEF . . . D 3 23.361 -15.654 31.05 1 29.8 ? C14 CEF 601 B 1 HETATM 25 N N4 CEF . . . D 3 24.36 -14.744 30.921 1 28.12 ? N4 CEF 601 B 1 HETATM 26 N N5 CEF . . . D 3 23.584 -16.864 31.574 1 28.84 ? N5 CEF 601 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #