data_6P57 # _model_server_result.job_id Ofl1XEfFRAk7iLE03tS4Hw _model_server_result.datetime_utc '2024-11-08 13:47:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":205}' # _entry.id 6P57 # _exptl.entry_id 6P57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P57 _cell.length_a 80.016 _cell.length_b 80.016 _cell.length_c 206.13 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,H 1 1,3 B,D,F,G,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 80.016 0 0 3 'crystal symmetry operation' 14_655 -x+3/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 120.024 40.008 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUL NAG C1 O1 . O6 HO6 . sing 4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 7 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 8 ? 3 6 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 201 NAG 2 n C NAG 2 C 2 NAG C 203 NAG 2 n C BMA 3 C 3 BMA C 204 BMA 2 n C FUL 4 C 4 FUL C 202 FUL 3 n D NAG 1 D 1 NAG D 201 NAG 3 n D NAG 2 D 2 NAG D 203 NAG 3 n D BMA 3 D 3 BMA D 204 BMA 3 n D MAN 4 D 4 MAN D 205 MAN 3 n D NAG 5 D 5 NAG D 206 NAG 3 n D FUL 6 D 6 FUL D 202 FUL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 9 1_555 A SG CYS 77 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 A SG CYS 43 A CYS 23 1_555 A SG CYS 92 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 46 A CYS 26 1_555 A SG CYS 130 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf4 A SG CYS 54 A CYS 34 1_555 A SG CYS 108 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf5 A SG CYS 58 A CYS 38 1_555 A SG CYS 110 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 A SG CYS 113 A CYS 93 1_555 A SG CYS 120 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 B SG CYS 29 B CYS 9 1_555 B SG CYS 77 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf8 B SG CYS 43 B CYS 23 1_555 B SG CYS 92 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf9 B SG CYS 46 B CYS 26 1_555 B SG CYS 130 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 B SG CYS 54 B CYS 34 1_555 B SG CYS 108 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf11 B SG CYS 58 B CYS 38 1_555 B SG CYS 110 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf12 B SG CYS 113 B CYS 93 1_555 B SG CYS 120 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 33 A ASN 13 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 B ND2 ASN 33 B ASN 13 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUL . C FUL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 D O6 NAG . D NAG 1 1_555 D C1 FUL . D FUL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale8 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale10 D O2 MAN . D MAN 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 313 n n C1 O1 MAN sing 314 n n C1 O5 MAN sing 315 n n C1 H1 MAN sing 316 n n C2 C3 MAN sing 317 n n C2 O2 MAN sing 318 n n C2 H2 MAN sing 319 n n C3 C4 MAN sing 320 n n C3 O3 MAN sing 321 n n C3 H3 MAN sing 322 n n C4 C5 MAN sing 323 n n C4 O4 MAN sing 324 n n C4 H4 MAN sing 325 n n C5 C6 MAN sing 326 n n C5 O5 MAN sing 327 n n C5 H5 MAN sing 328 n n C6 O6 MAN sing 329 n n C6 H61 MAN sing 330 n n C6 H62 MAN sing 331 n n O1 HO1 MAN sing 332 n n O2 HO2 MAN sing 333 n n O3 HO3 MAN sing 334 n n O4 HO4 MAN sing 335 n n O6 HO6 MAN sing 336 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6P57 _atom_sites.fract_transf_matrix[1][1] 0.012497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MAN A 1 205 2 MAN MAN . F 5 BOG B 1 207 1 BOG BOG . G 5 BOG B 1 208 2 BOG BOG . H 6 HOH A 1 301 2 HOH HOH . H 6 HOH A 2 302 18 HOH HOH . H 6 HOH A 3 303 17 HOH HOH . H 6 HOH A 4 304 5 HOH HOH . H 6 HOH A 5 305 22 HOH HOH . H 6 HOH A 6 306 4 HOH HOH . H 6 HOH A 7 307 21 HOH HOH . H 6 HOH A 8 308 9 HOH HOH . H 6 HOH A 9 309 7 HOH HOH . H 6 HOH A 10 310 25 HOH HOH . H 6 HOH A 11 311 20 HOH HOH . H 6 HOH A 12 312 8 HOH HOH . I 6 HOH B 1 301 13 HOH HOH . I 6 HOH B 2 302 16 HOH HOH . I 6 HOH B 3 303 15 HOH HOH . I 6 HOH B 4 304 14 HOH HOH . I 6 HOH B 5 305 19 HOH HOH . I 6 HOH B 6 306 1 HOH HOH . I 6 HOH B 7 307 3 HOH HOH . I 6 HOH B 8 308 6 HOH HOH . I 6 HOH B 9 309 12 HOH HOH . I 6 HOH B 10 310 23 HOH HOH . I 6 HOH B 11 311 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . E 4 63.335 2.865 76.995 1 182.74 ? C1 MAN 205 A 1 HETATM 2 C C2 MAN . . . E 4 62.075 3.512 76.432 1 179.07 ? C2 MAN 205 A 1 HETATM 3 C C3 MAN . . . E 4 60.849 3.136 77.256 1 185.48 ? C3 MAN 205 A 1 HETATM 4 C C4 MAN . . . E 4 60.783 1.629 77.474 1 185.9 ? C4 MAN 205 A 1 HETATM 5 C C5 MAN . . . E 4 62.116 1.087 77.98 1 185.47 ? C5 MAN 205 A 1 HETATM 6 C C6 MAN . . . E 4 62.083 -0.431 78.134 1 185.92 ? C6 MAN 205 A 1 HETATM 7 O O2 MAN . . . E 4 61.896 3.085 75.079 1 167.99 ? O2 MAN 205 A 1 HETATM 8 O O3 MAN . . . E 4 59.658 3.57 76.586 1 187.42 ? O3 MAN 205 A 1 HETATM 9 O O4 MAN . . . E 4 59.74 1.332 78.411 1 185.95 ? O4 MAN 205 A 1 HETATM 10 O O5 MAN . . . E 4 63.153 1.45 77.069 1 184.78 ? O5 MAN 205 A 1 HETATM 11 O O6 MAN . . . E 4 62.01 -0.789 79.521 1 195.15 ? O6 MAN 205 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 11 #