data_6P57
#
_model_server_result.job_id            Jf5DXrGVaX5mJa0Myg95Og 
_model_server_result.datetime_utc      '2024-11-08 13:39:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":207}' 
#
_entry.id    6P57 
#
_exptl.entry_id    6P57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6P57 
_cell.length_a            80.016 
_cell.length_b            80.016 
_cell.length_c            206.13 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,H 1 1,3 
B,D,F,G,I 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 80.016 0 0 
3 'crystal symmetry operation' 14_655 -x+3/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 120.024 40.008 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 1 FUL NAG C1 O1 . O6 HO6 . sing 
4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
5 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
6 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 
7 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 
8 ? 3 6 1 FUL NAG C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG C 201 NAG 
2 n C NAG 2 C 2 NAG C 203 NAG 
2 n C BMA 3 C 3 BMA C 204 BMA 
2 n C FUL 4 C 4 FUL C 202 FUL 
3 n D NAG 1 D 1 NAG D 201 NAG 
3 n D NAG 2 D 2 NAG D 203 NAG 
3 n D BMA 3 D 3 BMA D 204 BMA 
3 n D MAN 4 D 4 MAN D 205 MAN 
3 n D NAG 5 D 5 NAG D 206 NAG 
3 n D FUL 6 D 6 FUL D 202 FUL 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 9 1_555 A SG CYS 77 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf2 A SG CYS 43 A CYS 23 1_555 A SG CYS 92 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 A SG CYS 46 A CYS 26 1_555 A SG CYS 130 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf4 A SG CYS 54 A CYS 34 1_555 A SG CYS 108 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
disulf ? disulf5 A SG CYS 58 A CYS 38 1_555 A SG CYS 110 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 A SG CYS 113 A CYS 93 1_555 A SG CYS 120 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 B SG CYS 29 B CYS 9 1_555 B SG CYS 77 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf8 B SG CYS 43 B CYS 23 1_555 B SG CYS 92 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf9 B SG CYS 46 B CYS 26 1_555 B SG CYS 130 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf10 B SG CYS 54 B CYS 34 1_555 B SG CYS 108 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf11 B SG CYS 58 B CYS 38 1_555 B SG CYS 110 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf12 B SG CYS 113 B CYS 93 1_555 B SG CYS 120 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A ND2 ASN 33 A ASN 13 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 B ND2 ASN 33 B ASN 13 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? 
covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUL . C FUL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale7 D O6 NAG . D NAG 1 1_555 D C1 FUL . D FUL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale8 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale9 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale10 D O2 MAN . D MAN 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 94 n n 
C1 C2 BOG sing 95 n n 
C1 O5 BOG sing 96 n n 
C1 H1 BOG sing 97 n n 
O1 C1' BOG sing 98 n n 
C2 O2 BOG sing 99 n n 
C2 C3 BOG sing 100 n n 
C2 H2 BOG sing 101 n n 
O2 HO2 BOG sing 102 n n 
C3 O3 BOG sing 103 n n 
C3 C4 BOG sing 104 n n 
C3 H3 BOG sing 105 n n 
O3 HO3 BOG sing 106 n n 
C4 O4 BOG sing 107 n n 
C4 C5 BOG sing 108 n n 
C4 H4 BOG sing 109 n n 
O4 HO4 BOG sing 110 n n 
C5 O5 BOG sing 111 n n 
C5 C6 BOG sing 112 n n 
C5 H5 BOG sing 113 n n 
C6 O6 BOG sing 114 n n 
C6 H61 BOG sing 115 n n 
C6 H62 BOG sing 116 n n 
O6 HO6 BOG sing 117 n n 
C1' C2' BOG sing 118 n n 
C1' "H1'1" BOG sing 119 n n 
C1' "H1'2" BOG sing 120 n n 
C2' C3' BOG sing 121 n n 
C2' "H2'1" BOG sing 122 n n 
C2' "H2'2" BOG sing 123 n n 
C3' C4' BOG sing 124 n n 
C3' "H3'1" BOG sing 125 n n 
C3' "H3'2" BOG sing 126 n n 
C4' C5' BOG sing 127 n n 
C4' "H4'1" BOG sing 128 n n 
C4' "H4'2" BOG sing 129 n n 
C5' C6' BOG sing 130 n n 
C5' "H5'1" BOG sing 131 n n 
C5' "H5'2" BOG sing 132 n n 
C6' C7' BOG sing 133 n n 
C6' "H6'1" BOG sing 134 n n 
C6' "H6'2" BOG sing 135 n n 
C7' C8' BOG sing 136 n n 
C7' "H7'1" BOG sing 137 n n 
C7' "H7'2" BOG sing 138 n n 
C8' "H8'1" BOG sing 139 n n 
C8' "H8'2" BOG sing 140 n n 
C8' "H8'3" BOG sing 141 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6P57 
_atom_sites.fract_transf_matrix[1][1]    0.012497 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012497 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004851 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 MAN A 1 205 2 MAN MAN . 
F 5 BOG B 1 207 1 BOG BOG . 
G 5 BOG B 1 208 2 BOG BOG . 
H 6 HOH A 1 301 2 HOH HOH . 
H 6 HOH A 2 302 18 HOH HOH . 
H 6 HOH A 3 303 17 HOH HOH . 
H 6 HOH A 4 304 5 HOH HOH . 
H 6 HOH A 5 305 22 HOH HOH . 
H 6 HOH A 6 306 4 HOH HOH . 
H 6 HOH A 7 307 21 HOH HOH . 
H 6 HOH A 8 308 9 HOH HOH . 
H 6 HOH A 9 309 7 HOH HOH . 
H 6 HOH A 10 310 25 HOH HOH . 
H 6 HOH A 11 311 20 HOH HOH . 
H 6 HOH A 12 312 8 HOH HOH . 
I 6 HOH B 1 301 13 HOH HOH . 
I 6 HOH B 2 302 16 HOH HOH . 
I 6 HOH B 3 303 15 HOH HOH . 
I 6 HOH B 4 304 14 HOH HOH . 
I 6 HOH B 5 305 19 HOH HOH . 
I 6 HOH B 6 306 1 HOH HOH . 
I 6 HOH B 7 307 3 HOH HOH . 
I 6 HOH B 8 308 6 HOH HOH . 
I 6 HOH B 9 309 12 HOH HOH . 
I 6 HOH B 10 310 23 HOH HOH . 
I 6 HOH B 11 311 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . F 5 35.699 5.135 54.951 1 56.26 ? C1 BOG 207 B 1 
HETATM 2 O O1 BOG . . . F 5 35.667 5.751 53.656 1 63.97 ? O1 BOG 207 B 1 
HETATM 3 C C2 BOG . . . F 5 35.473 3.621 54.883 1 55.2 ? C2 BOG 207 B 1 
HETATM 4 O O2 BOG . . . F 5 34.257 3.273 54.226 1 57.82 ? O2 BOG 207 B 1 
HETATM 5 C C3 BOG . . . F 5 35.527 3.06 56.298 1 53.58 ? C3 BOG 207 B 1 
HETATM 6 O O3 BOG . . . F 5 35.348 1.646 56.291 1 52.71 ? O3 BOG 207 B 1 
HETATM 7 C C4 BOG . . . F 5 36.862 3.458 56.936 1 51.68 ? C4 BOG 207 B 1 
HETATM 8 O O4 BOG . . . F 5 36.983 2.975 58.264 1 50.48 ? O4 BOG 207 B 1 
HETATM 9 C C5 BOG . . . F 5 36.946 4.98 56.931 1 52.18 ? C5 BOG 207 B 1 
HETATM 10 O O5 BOG . . . F 5 36.964 5.381 55.573 1 53.13 ? O5 BOG 207 B 1 
HETATM 11 C C6 BOG . . . F 5 38.097 5.562 57.74 1 53.74 ? C6 BOG 207 B 1 
HETATM 12 O O6 BOG . . . F 5 38.206 6.961 57.501 1 55.23 ? O6 BOG 207 B 1 
HETATM 13 C C1' BOG . . . F 5 35.394 7.141 53.817 1 60.89 ? C1' BOG 207 B 1 
HETATM 14 C C2' BOG . . . F 5 35.829 7.9 52.568 1 61.06 ? C2' BOG 207 B 1 
HETATM 15 C C3' BOG . . . F 5 35.544 9.395 52.695 1 57.77 ? C3' BOG 207 B 1 
HETATM 16 C C4' BOG . . . F 5 35.634 9.829 54.151 1 57.63 ? C4' BOG 207 B 1 
HETATM 17 C C5' BOG . . . F 5 35.601 11.337 54.341 1 55 ? C5' BOG 207 B 1 
HETATM 18 C C6' BOG . . . F 5 35.49 11.619 55.835 1 54.67 ? C6' BOG 207 B 1 
HETATM 19 C C7' BOG . . . F 5 34.868 12.989 56.091 1 59.08 ? C7' BOG 207 B 1 
HETATM 20 C C8' BOG . . . F 5 34.94 13.389 57.55 1 57.8 ? C8' BOG 207 B 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           20 
#