data_6P5M # _model_server_result.job_id i2xEe5LatsrknqPXQiSNSA _model_server_result.datetime_utc '2024-10-19 04:47:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2500}' # _entry.id 6P5M # _exptl.entry_id 6P5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 315.393 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(5-methyl-1H-pyrazol-4-yl)-2-[(pyrrolidin-1-yl)methyl]thieno[3,2-d]pyrimidin-4(3H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.12 _cell.angle_gamma 90 _cell.entry_id 6P5M _cell.length_a 89.456 _cell.length_b 146.416 _cell.length_c 111.876 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G 1 1 B,F,H 2 1 C,I 3 1 D,J 4 1 A,D,E,G,J 5 1 B,C,F,H,I 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C15 H17 N5 O S' _chem_comp.formula_weight 315.393 _chem_comp.id O1S _chem_comp.mon_nstd_flag . _chem_comp.name 6-(5-methyl-1H-pyrazol-4-yl)-2-[(pyrrolidin-1-yl)methyl]thieno[3,2-d]pyrimidin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C6 O1S doub 237 n y N5 N3 O1S sing 238 n y C6 C7 O1S sing 239 n y N3 C2 O1S sing 240 n y C9 C8 O1S doub 241 n y C9 C10 O1S sing 242 n y C7 C2 O1S doub 243 n y C7 C8 O1S sing 244 n n N11 C10 O1S sing 245 n n N11 C12 O1S doub 246 n n C2 C1 O1S sing 247 n n C8 S24 O1S sing 248 n y C13 C12 O1S sing 249 n n C13 N14 O1S sing 250 n n C10 C23 O1S doub 251 n y C12 N19 O1S sing 252 n n C18 N14 O1S sing 253 n n C18 C17 O1S sing 254 n n C15 N14 O1S sing 255 n n C15 C16 O1S sing 256 n n C17 C16 O1S sing 257 n n C23 S24 O1S sing 258 n y C23 C21 O1S sing 259 n n N19 C21 O1S sing 260 n n C21 O22 O1S doub 261 n n N3 H1 O1S sing 262 n n C6 H2 O1S sing 263 n n C13 H3 O1S sing 264 n n C13 H4 O1S sing 265 n n C15 H5 O1S sing 266 n n C15 H6 O1S sing 267 n n C17 H7 O1S sing 268 n n C17 H8 O1S sing 269 n n C1 H9 O1S sing 270 n n C1 H10 O1S sing 271 n n C1 H11 O1S sing 272 n n C9 H12 O1S sing 273 n n C16 H14 O1S sing 274 n n C16 H15 O1S sing 275 n n C18 H16 O1S sing 276 n n C18 H17 O1S sing 277 n n N19 H18 O1S sing 278 n n # _atom_sites.entry_id 6P5M _atom_sites.fract_transf_matrix[1][1] 0.011179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001396 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 O1S A 1 2500 2500 O1S LIG . F 2 O1S B 1 2500 2500 O1S LIG . G 3 HOH A 1 2601 23 HOH HOH . G 3 HOH A 2 2602 2 HOH HOH . G 3 HOH A 3 2603 1 HOH HOH . G 3 HOH A 4 2604 24 HOH HOH . G 3 HOH A 5 2605 44 HOH HOH . G 3 HOH A 6 2606 45 HOH HOH . G 3 HOH A 7 2607 3 HOH HOH . G 3 HOH A 8 2608 27 HOH HOH . G 3 HOH A 9 2609 4 HOH HOH . H 3 HOH B 1 2601 7 HOH HOH . H 3 HOH B 2 2602 21 HOH HOH . H 3 HOH B 3 2603 18 HOH HOH . H 3 HOH B 4 2604 41 HOH HOH . H 3 HOH B 5 2605 20 HOH HOH . H 3 HOH B 6 2606 8 HOH HOH . H 3 HOH B 7 2607 22 HOH HOH . H 3 HOH B 8 2608 19 HOH HOH . H 3 HOH B 9 2609 38 HOH HOH . H 3 HOH B 10 2610 25 HOH HOH . I 3 HOH C 1 501 39 HOH HOH . I 3 HOH C 2 502 36 HOH HOH . I 3 HOH C 3 503 32 HOH HOH . I 3 HOH C 4 504 37 HOH HOH . I 3 HOH C 5 505 31 HOH HOH . I 3 HOH C 6 506 26 HOH HOH . I 3 HOH C 7 507 33 HOH HOH . I 3 HOH C 8 508 29 HOH HOH . I 3 HOH C 9 509 28 HOH HOH . I 3 HOH C 10 510 5 HOH HOH . I 3 HOH C 11 511 34 HOH HOH . I 3 HOH C 12 512 30 HOH HOH . I 3 HOH C 13 513 35 HOH HOH . J 3 HOH D 1 501 6 HOH HOH . J 3 HOH D 2 502 42 HOH HOH . J 3 HOH D 3 503 12 HOH HOH . J 3 HOH D 4 504 14 HOH HOH . J 3 HOH D 5 505 10 HOH HOH . J 3 HOH D 6 506 17 HOH HOH . J 3 HOH D 7 507 16 HOH HOH . J 3 HOH D 8 508 13 HOH HOH . J 3 HOH D 9 509 9 HOH HOH . J 3 HOH D 10 510 40 HOH HOH . J 3 HOH D 11 511 15 HOH HOH . J 3 HOH D 12 512 11 HOH HOH . J 3 HOH D 13 513 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 O1S . . . E 2 -39.272 48.864 -52.756 0.8 45.23 ? N3 O1S 2500 A 1 HETATM 2 C C6 O1S . . . E 2 -39.923 50.68 -53.831 0.8 49.37 ? C6 O1S 2500 A 1 HETATM 3 C C7 O1S . . . E 2 -39.928 50.919 -52.438 0.8 54.2 ? C7 O1S 2500 A 1 HETATM 4 C C8 O1S . . . E 2 -40.306 52.199 -51.793 0.8 58.25 ? C8 O1S 2500 A 1 HETATM 5 C C10 O1S . . . E 2 -41.037 54.394 -51.696 0.8 65.77 ? C10 O1S 2500 A 1 HETATM 6 C C13 O1S . . . E 2 -42.313 57.878 -51.741 0.8 82.09 ? C13 O1S 2500 A 1 HETATM 7 C C15 O1S . . . E 2 -44.687 57.454 -51.136 0.8 70.1 ? C15 O1S 2500 A 1 HETATM 8 C C17 O1S . . . E 2 -45.366 59.782 -50.702 0.8 70.39 ? C17 O1S 2500 A 1 HETATM 9 C C21 O1S . . . E 2 -41.082 55.201 -49.402 0.8 68.16 ? C21 O1S 2500 A 1 HETATM 10 C C1 O1S . . . E 2 -39.343 49.505 -50.373 0.8 46.78 ? C1 O1S 2500 A 1 HETATM 11 C C2 O1S . . . E 2 -39.516 49.765 -51.823 0.8 44.67 ? C2 O1S 2500 A 1 HETATM 12 N N5 O1S . . . E 2 -39.531 49.449 -54.007 0.8 53.21 ? N5 O1S 2500 A 1 HETATM 13 C C9 O1S . . . E 2 -40.744 53.276 -52.47 0.8 60.03 ? C9 O1S 2500 A 1 HETATM 14 N N11 O1S . . . E 2 -41.512 55.624 -52.097 0.8 66.14 ? N11 O1S 2500 A 1 HETATM 15 C C12 O1S . . . E 2 -41.75 56.566 -51.233 0.8 77.36 ? C12 O1S 2500 A 1 HETATM 16 N N14 O1S . . . E 2 -43.483 58.284 -50.923 0.8 83.87 ? N14 O1S 2500 A 1 HETATM 17 C C16 O1S . . . E 2 -45.823 58.304 -50.506 0.8 70.01 ? C16 O1S 2500 A 1 HETATM 18 C C18 O1S . . . E 2 -43.89 59.68 -51.155 0.8 76.11 ? C18 O1S 2500 A 1 HETATM 19 N N19 O1S . . . E 2 -41.533 56.391 -49.884 0.8 76.88 ? N19 O1S 2500 A 1 HETATM 20 O O22 O1S . . . E 2 -40.893 55.015 -48.204 0.8 55.25 ? O22 O1S 2500 A 1 HETATM 21 C C23 O1S . . . E 2 -40.825 54.163 -50.327 0.8 67.91 ? C23 O1S 2500 A 1 HETATM 22 S S24 O1S . . . E 2 -40.248 52.523 -50.063 0.8 52.43 ? S24 O1S 2500 A 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #