data_6P5S # _model_server_result.job_id lpGm0QR5qWCag3STxmJR0g _model_server_result.datetime_utc '2024-11-24 12:10:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p5s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6P5S # _exptl.entry_id 6P5S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.77 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6P5S _cell.length_a 130.155 _cell.length_b 130.155 _cell.length_c 52.253 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 203 A THR 360 1_555 A N PTR 204 A PTR 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C PTR 204 A PTR 361 1_555 A N LEU 205 A LEU 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale3 A C ASP 283 A ASP 440 1_555 A N SEP 284 A SEP 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C SEP 284 A SEP 441 1_555 A N PRO 285 A PRO 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? # _chem_comp.formula 'C19 H12 Cl N3 O2' _chem_comp.formula_weight 349.77 _chem_comp.id 3NG _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 3NG doub 1 n y C1 N9 3NG sing 2 n y C1 C6 3NG sing 3 n y C2 C3 3NG sing 4 n y C8 C2 3NG sing 5 n y C3 C4 3NG doub 6 n y C3 H3 3NG sing 7 n n C4 C5 3NG sing 8 n y C4 H4 3NG sing 9 n n C5 C6 3NG doub 10 n y C5 C23 3NG sing 11 n n C6 H6 3NG sing 12 n n C14 C7 3NG sing 13 n y C10 C7 3NG sing 14 n y C7 C8 3NG doub 15 n y C8 C13 3NG sing 16 n y C10 N9 3NG doub 17 n y N15 C10 3NG sing 18 n n C14 C11 3NG doub 19 n y C11 N12 3NG sing 20 n y C11 H11 3NG sing 21 n n N12 C13 3NG doub 22 n y C13 H13 3NG sing 23 n n C14 H14 3NG sing 24 n n C16 N15 3NG sing 25 n n N15 HN15 3NG sing 26 n n C21 C16 3NG doub 27 n y C16 C17 3NG sing 28 n y C18 C17 3NG doub 29 n y C17 H17 3NG sing 30 n n C19 C18 3NG sing 31 n y C18 CL22 3NG sing 32 n n C20 C19 3NG doub 33 n y C19 H19 3NG sing 34 n n C20 C21 3NG sing 35 n y C20 H20 3NG sing 36 n n C21 H21 3NG sing 37 n n O24 C23 3NG doub 38 n n C23 O25 3NG sing 39 n n O25 HO25 3NG sing 40 n n # _atom_sites.entry_id 6P5S _atom_sites.fract_transf_matrix[1][1] 0.007683 _atom_sites.fract_transf_matrix[1][2] 0.004436 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3NG A 1 601 1 3NG 3NG . C 3 HOH A 1 701 70 HOH HOH . C 3 HOH A 2 702 147 HOH HOH . C 3 HOH A 3 703 46 HOH HOH . C 3 HOH A 4 704 137 HOH HOH . C 3 HOH A 5 705 162 HOH HOH . C 3 HOH A 6 706 151 HOH HOH . C 3 HOH A 7 707 189 HOH HOH . C 3 HOH A 8 708 197 HOH HOH . C 3 HOH A 9 709 136 HOH HOH . C 3 HOH A 10 710 215 HOH HOH . C 3 HOH A 11 711 206 HOH HOH . C 3 HOH A 12 712 143 HOH HOH . C 3 HOH A 13 713 181 HOH HOH . C 3 HOH A 14 714 153 HOH HOH . C 3 HOH A 15 715 157 HOH HOH . C 3 HOH A 16 716 37 HOH HOH . C 3 HOH A 17 717 20 HOH HOH . C 3 HOH A 18 718 131 HOH HOH . C 3 HOH A 19 719 150 HOH HOH . C 3 HOH A 20 720 169 HOH HOH . C 3 HOH A 21 721 138 HOH HOH . C 3 HOH A 22 722 194 HOH HOH . C 3 HOH A 23 723 191 HOH HOH . C 3 HOH A 24 724 135 HOH HOH . C 3 HOH A 25 725 211 HOH HOH . C 3 HOH A 26 726 33 HOH HOH . C 3 HOH A 27 727 145 HOH HOH . C 3 HOH A 28 728 199 HOH HOH . C 3 HOH A 29 729 195 HOH HOH . C 3 HOH A 30 730 186 HOH HOH . C 3 HOH A 31 731 196 HOH HOH . C 3 HOH A 32 732 208 HOH HOH . C 3 HOH A 33 733 213 HOH HOH . C 3 HOH A 34 734 132 HOH HOH . C 3 HOH A 35 735 8 HOH HOH . C 3 HOH A 36 736 130 HOH HOH . C 3 HOH A 37 737 214 HOH HOH . C 3 HOH A 38 738 133 HOH HOH . C 3 HOH A 39 739 165 HOH HOH . C 3 HOH A 40 740 34 HOH HOH . C 3 HOH A 41 741 81 HOH HOH . C 3 HOH A 42 742 166 HOH HOH . C 3 HOH A 43 743 202 HOH HOH . C 3 HOH A 44 744 180 HOH HOH . C 3 HOH A 45 745 19 HOH HOH . C 3 HOH A 46 746 6 HOH HOH . C 3 HOH A 47 747 212 HOH HOH . C 3 HOH A 48 748 146 HOH HOH . C 3 HOH A 49 749 164 HOH HOH . C 3 HOH A 50 750 140 HOH HOH . C 3 HOH A 51 751 56 HOH HOH . C 3 HOH A 52 752 207 HOH HOH . C 3 HOH A 53 753 205 HOH HOH . C 3 HOH A 54 754 204 HOH HOH . C 3 HOH A 55 755 42 HOH HOH . C 3 HOH A 56 756 198 HOH HOH . C 3 HOH A 57 757 209 HOH HOH . C 3 HOH A 58 758 192 HOH HOH . C 3 HOH A 59 759 210 HOH HOH . C 3 HOH A 60 760 201 HOH HOH . C 3 HOH A 61 761 154 HOH HOH . C 3 HOH A 62 762 185 HOH HOH . C 3 HOH A 63 763 188 HOH HOH . C 3 HOH A 64 764 193 HOH HOH . C 3 HOH A 65 765 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3NG . . . B 2 -34.74 40.695 -10.786 1 52.57 ? C1 3NG 601 A 1 HETATM 2 C C2 3NG . . . B 2 -34.996 41.917 -10.17 1 52.34 ? C2 3NG 601 A 1 HETATM 3 C C3 3NG . . . B 2 -36.235 42.132 -9.493 1 54.28 ? C3 3NG 601 A 1 HETATM 4 C C4 3NG . . . B 2 -37.198 41.145 -9.45 1 51.74 ? C4 3NG 601 A 1 HETATM 5 C C5 3NG . . . B 2 -36.937 39.891 -10.091 1 57.34 ? C5 3NG 601 A 1 HETATM 6 C C6 3NG . . . B 2 -35.723 39.683 -10.75 1 51.01 ? C6 3NG 601 A 1 HETATM 7 C C7 3NG . . . B 2 -32.815 42.736 -10.85 1 52.15 ? C7 3NG 601 A 1 HETATM 8 C C8 3NG . . . B 2 -33.996 42.945 -10.203 1 55.16 ? C8 3NG 601 A 1 HETATM 9 N N9 3NG . . . B 2 -33.529 40.489 -11.443 1 56.33 ? N9 3NG 601 A 1 HETATM 10 C C10 3NG . . . B 2 -32.556 41.496 -11.478 1 57.41 ? C10 3NG 601 A 1 HETATM 11 C C11 3NG . . . B 2 -32.098 44.95 -10.273 1 54.19 ? C11 3NG 601 A 1 HETATM 12 N N12 3NG . . . B 2 -33.282 45.148 -9.635 1 55.72 ? N12 3NG 601 A 1 HETATM 13 C C13 3NG . . . B 2 -34.237 44.172 -9.577 1 55.38 ? C13 3NG 601 A 1 HETATM 14 C C14 3NG . . . B 2 -31.843 43.727 -10.904 1 49.57 ? C14 3NG 601 A 1 HETATM 15 N N15 3NG . . . B 2 -31.357 41.08 -12.219 1 60.5 ? N15 3NG 601 A 1 HETATM 16 C C16 3NG . . . B 2 -31.108 39.798 -12.884 1 64.98 ? C16 3NG 601 A 1 HETATM 17 C C17 3NG . . . B 2 -32.085 39.088 -13.581 1 76.27 ? C17 3NG 601 A 1 HETATM 18 C C18 3NG . . . B 2 -31.768 37.883 -14.201 1 79.66 ? C18 3NG 601 A 1 HETATM 19 C C19 3NG . . . B 2 -30.475 37.393 -14.124 1 71.05 ? C19 3NG 601 A 1 HETATM 20 C C20 3NG . . . B 2 -29.511 38.095 -13.451 1 66.99 ? C20 3NG 601 A 1 HETATM 21 C C21 3NG . . . B 2 -29.827 39.303 -12.835 1 62.9 ? C21 3NG 601 A 1 HETATM 22 CL CL22 3NG . . . B 2 -33.007 36.96 -15.087 1 86.7 ? CL22 3NG 601 A 1 HETATM 23 C C23 3NG . . . B 2 -38.041 38.888 -9.962 1 57 ? C23 3NG 601 A 1 HETATM 24 O O24 3NG . . . B 2 -38.019 37.821 -10.652 1 63.05 ? O24 3NG 601 A 1 HETATM 25 O O25 3NG . . . B 2 -38.979 39.062 -9.125 1 64.98 ? O25 3NG 601 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #