data_6P5Z # _model_server_result.job_id V0s6IJvlnH_144L0Y2zFoQ _model_server_result.datetime_utc '2025-03-09 02:19:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6P5Z # _exptl.entry_id 6P5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 919.749 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cobalt-sirohydrochlorin _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P5Z _cell.length_a 59.601 _cell.length_b 100.446 _cell.length_c 146.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 359 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 359 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id CO _struct_conn.ptnr2_label_comp_id F0X _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id F0X _struct_conn.ptnr2_auth_seq_id 503 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.711 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C42 H44 Co N4 O16 2' _chem_comp.formula_weight 919.749 _chem_comp.id F0X _chem_comp.mon_nstd_flag . _chem_comp.name cobalt-sirohydrochlorin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C72 F0X doub 83 n n C72 O2 F0X sing 84 n n C72 C71 F0X sing 85 n n C32 C33 F0X sing 86 n n C32 C31 F0X sing 87 n n O34 C33 F0X doub 88 n n C33 O35 F0X sing 89 n n C71 C14 F0X sing 90 n n C14 C19 F0X sing 91 n n C31 C26 F0X sing 92 n n C31 C30 F0X doub 93 n n C25 C26 F0X sing 94 n n C25 C18 F0X doub 95 n n C26 N27 F0X doub 96 n n C36 C30 F0X sing 97 n n C36 C37 F0X sing 98 n n O39 C38 F0X doub 99 n n C30 C28 F0X sing 100 n n C18 C19 F0X sing 101 n n C18 N17 F0X sing 102 n n C19 C2 F0X sing 103 n n C38 C37 F0X sing 104 n n C38 O40 F0X sing 105 n n N27 C28 F0X sing 106 n n N27 CO F0X sing 107 n n C28 C29 F0X doub 108 n n N17 CO F0X sing 109 n n N17 C3 F0X sing 110 n n C1 C2 F0X sing 111 n n CO N14 F0X sing 112 n n CO N16 F0X sing 113 n n C2 C3 F0X sing 114 n n C2 C60 F0X sing 115 n n O45 C43 F0X doub 116 n n C29 C13 F0X sing 117 n n C50 C07 F0X sing 118 n n C42 C43 F0X sing 119 n n C42 C41 F0X sing 120 n n C3 C4 F0X doub 121 n n N14 C13 F0X sing 122 n y N14 C10 F0X sing 123 n y C43 O44 F0X sing 124 n n C13 C12 F0X doub 125 n y N16 C8 F0X sing 126 n n N16 C5 F0X doub 127 n n O59 C57 F0X doub 128 n n C60 C61 F0X sing 129 n n O48 C47 F0X doub 130 n n O63 C61 F0X doub 131 n n C8 C07 F0X sing 132 n n C8 C9 F0X doub 133 n n C10 C9 F0X sing 134 n n C10 C11 F0X doub 135 n y C55 C06 F0X sing 136 n n C55 C56 F0X sing 137 n n C12 C41 F0X sing 138 n n C12 C11 F0X sing 139 n y C07 C06 F0X sing 140 n n C07 C51 F0X sing 141 n n C5 C4 F0X sing 142 n n C5 C06 F0X sing 143 n n C57 O58 F0X sing 144 n n C57 C56 F0X sing 145 n n C61 O62 F0X sing 146 n n O53 C52 F0X doub 147 n n C11 C46 F0X sing 148 n n C47 C46 F0X sing 149 n n C47 O49 F0X sing 150 n n C51 C52 F0X sing 151 n n C52 O54 F0X sing 152 n n O2 H1 F0X sing 153 n n C71 H2 F0X sing 154 n n C71 H3 F0X sing 155 n n C14 H4 F0X sing 156 n n C14 H5 F0X sing 157 n n C60 H6 F0X sing 158 n n C60 H7 F0X sing 159 n n O62 H8 F0X sing 160 n n C1 H9 F0X sing 161 n n C1 H10 F0X sing 162 n n C1 H11 F0X sing 163 n n C25 H12 F0X sing 164 n n C32 H13 F0X sing 165 n n C32 H14 F0X sing 166 n n O35 H15 F0X sing 167 n n C36 H16 F0X sing 168 n n C36 H17 F0X sing 169 n n C37 H18 F0X sing 170 n n C37 H19 F0X sing 171 n n O40 H20 F0X sing 172 n n C29 H21 F0X sing 173 n n C41 H22 F0X sing 174 n n C41 H23 F0X sing 175 n n C42 H24 F0X sing 176 n n C42 H25 F0X sing 177 n n O44 H26 F0X sing 178 n n C46 H27 F0X sing 179 n n C46 H28 F0X sing 180 n n O49 H29 F0X sing 181 n n C9 H30 F0X sing 182 n n C4 H31 F0X sing 183 n n C50 H32 F0X sing 184 n n C50 H33 F0X sing 185 n n C50 H34 F0X sing 186 n n C51 H35 F0X sing 187 n n C51 H36 F0X sing 188 n n O54 H37 F0X sing 189 n n C55 H38 F0X sing 190 n n C55 H39 F0X sing 191 n n C56 H40 F0X sing 192 n n C56 H41 F0X sing 193 n n O58 H42 F0X sing 194 n n C19 H43 F0X sing 195 n n C06 H44 F0X sing 196 n n # _atom_sites.entry_id 6P5Z _atom_sites.fract_transf_matrix[1][1] 0.016778 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 501 458 SAH SAH . D 3 F0X A 1 502 1 F0X SIR . E 3 F0X A 1 503 2 F0X SIR . F 4 CL A 1 504 2 CL CL . G 2 SAH B 1 501 458 SAH SAH . H 4 CL B 1 502 1 CL CL . I 5 HOH A 1 601 8 HOH HOH . I 5 HOH A 2 602 24 HOH HOH . I 5 HOH A 3 603 12 HOH HOH . I 5 HOH A 4 604 48 HOH HOH . I 5 HOH A 5 605 23 HOH HOH . I 5 HOH A 6 606 30 HOH HOH . I 5 HOH A 7 607 19 HOH HOH . I 5 HOH A 8 608 21 HOH HOH . I 5 HOH A 9 609 28 HOH HOH . I 5 HOH A 10 610 29 HOH HOH . I 5 HOH A 11 611 13 HOH HOH . I 5 HOH A 12 612 49 HOH HOH . I 5 HOH A 13 613 32 HOH HOH . I 5 HOH A 14 614 22 HOH HOH . I 5 HOH A 15 615 37 HOH HOH . I 5 HOH A 16 616 9 HOH HOH . I 5 HOH A 17 617 36 HOH HOH . I 5 HOH A 18 618 7 HOH HOH . I 5 HOH A 19 619 53 HOH HOH . I 5 HOH A 20 620 15 HOH HOH . I 5 HOH A 21 621 46 HOH HOH . I 5 HOH A 22 622 11 HOH HOH . I 5 HOH A 23 623 25 HOH HOH . I 5 HOH A 24 624 26 HOH HOH . I 5 HOH A 25 625 44 HOH HOH . I 5 HOH A 26 626 45 HOH HOH . I 5 HOH A 27 627 50 HOH HOH . I 5 HOH A 28 628 27 HOH HOH . I 5 HOH A 29 629 52 HOH HOH . J 5 HOH B 1 601 51 HOH HOH . J 5 HOH B 2 602 43 HOH HOH . J 5 HOH B 3 603 16 HOH HOH . J 5 HOH B 4 604 34 HOH HOH . J 5 HOH B 5 605 33 HOH HOH . J 5 HOH B 6 606 17 HOH HOH . J 5 HOH B 7 607 6 HOH HOH . J 5 HOH B 8 608 41 HOH HOH . J 5 HOH B 9 609 10 HOH HOH . J 5 HOH B 10 610 1 HOH HOH . J 5 HOH B 11 611 18 HOH HOH . J 5 HOH B 12 612 39 HOH HOH . J 5 HOH B 13 613 4 HOH HOH . J 5 HOH B 14 614 14 HOH HOH . J 5 HOH B 15 615 20 HOH HOH . J 5 HOH B 16 616 31 HOH HOH . J 5 HOH B 17 617 40 HOH HOH . J 5 HOH B 18 618 35 HOH HOH . J 5 HOH B 19 619 2 HOH HOH . J 5 HOH B 20 620 5 HOH HOH . J 5 HOH B 21 621 3 HOH HOH . J 5 HOH B 22 622 38 HOH HOH . J 5 HOH B 23 623 42 HOH HOH . J 5 HOH B 24 624 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 F0X . . . D 3 -26.658 -34.118 28.092 1 185.77 ? O2 F0X 502 A 1 HETATM 2 C C72 F0X . . . D 3 -26.56 -33.081 28.788 1 182.51 ? C72 F0X 502 A 1 HETATM 3 O O1 F0X . . . D 3 -25.885 -32.086 28.44 1 186.43 ? O1 F0X 502 A 1 HETATM 4 C C71 F0X . . . D 3 -27.294 -33.025 30.108 1 172.46 ? C71 F0X 502 A 1 HETATM 5 C C14 F0X . . . D 3 -27.11 -34.335 30.867 1 164.4 ? C14 F0X 502 A 1 HETATM 6 C C19 F0X . . . D 3 -25.934 -34.261 31.816 1 158.32 ? C19 F0X 502 A 1 HETATM 7 C C2 F0X . . . D 3 -24.766 -35.111 31.477 1 163.24 ? C2 F0X 502 A 1 HETATM 8 C C60 F0X . . . D 3 -25.083 -36.595 31.71 1 167.66 ? C60 F0X 502 A 1 HETATM 9 C C61 F0X . . . D 3 -24.878 -37.504 30.517 1 168.47 ? C61 F0X 502 A 1 HETATM 10 O O63 F0X . . . D 3 -23.898 -38.285 30.528 1 167.56 ? O63 F0X 502 A 1 HETATM 11 O O62 F0X . . . D 3 -25.707 -37.469 29.58 1 169.02 ? O62 F0X 502 A 1 HETATM 12 C C1 F0X . . . D 3 -24.044 -34.787 30.168 1 167.06 ? C1 F0X 502 A 1 HETATM 13 C C18 F0X . . . D 3 -25.729 -33.548 33.094 1 149.15 ? C18 F0X 502 A 1 HETATM 14 N N17 F0X . . . D 3 -24.501 -33.835 33.568 1 146.18 ? N17 F0X 502 A 1 HETATM 15 C C3 F0X . . . D 3 -23.948 -34.684 32.662 1 154.15 ? C3 F0X 502 A 1 HETATM 16 C C25 F0X . . . D 3 -26.655 -32.617 33.773 1 141.27 ? C25 F0X 502 A 1 HETATM 17 C C26 F0X . . . D 3 -26.577 -32.216 35.195 1 139.96 ? C26 F0X 502 A 1 HETATM 18 C C31 F0X . . . D 3 -27.727 -31.627 35.922 1 141.59 ? C31 F0X 502 A 1 HETATM 19 C C32 F0X . . . D 3 -29.102 -31.318 35.375 1 141.14 ? C32 F0X 502 A 1 HETATM 20 C C33 F0X . . . D 3 -30.206 -31.949 36.188 1 140.47 ? C33 F0X 502 A 1 HETATM 21 O O35 F0X . . . D 3 -29.914 -32.741 37.111 1 140.45 ? O35 F0X 502 A 1 HETATM 22 O O34 F0X . . . D 3 -31.381 -31.641 35.896 1 139.57 ? O34 F0X 502 A 1 HETATM 23 C C30 F0X . . . D 3 -27.17 -31.412 37.272 1 144.96 ? C30 F0X 502 A 1 HETATM 24 C C36 F0X . . . D 3 -27.835 -30.803 38.476 1 152.94 ? C36 F0X 502 A 1 HETATM 25 C C37 F0X . . . D 3 -27.834 -29.298 38.189 1 158.24 ? C37 F0X 502 A 1 HETATM 26 C C38 F0X . . . D 3 -26.454 -28.822 37.762 1 165.02 ? C38 F0X 502 A 1 HETATM 27 O O40 F0X . . . D 3 -25.635 -28.475 38.642 1 168.22 ? O40 F0X 502 A 1 HETATM 28 O O39 F0X . . . D 3 -26.168 -28.776 36.543 1 166.88 ? O39 F0X 502 A 1 HETATM 29 C C28 F0X . . . D 3 -25.771 -31.9 37.155 1 140.32 ? C28 F0X 502 A 1 HETATM 30 C C29 F0X . . . D 3 -24.807 -31.91 38.285 1 141.14 ? C29 F0X 502 A 1 HETATM 31 C C13 F0X . . . D 3 -23.332 -32.018 38.208 1 142.48 ? C13 F0X 502 A 1 HETATM 32 C C12 F0X . . . D 3 -22.424 -31.636 39.322 1 139.11 ? C12 F0X 502 A 1 HETATM 33 C C41 F0X . . . D 3 -22.771 -31.11 40.688 1 134.44 ? C41 F0X 502 A 1 HETATM 34 C C42 F0X . . . D 3 -22.764 -29.59 40.73 1 132.6 ? C42 F0X 502 A 1 HETATM 35 C C43 F0X . . . D 3 -24.113 -29.149 41.241 1 131.66 ? C43 F0X 502 A 1 HETATM 36 O O45 F0X . . . D 3 -24.412 -27.939 41.154 1 129.37 ? O45 F0X 502 A 1 HETATM 37 O O44 F0X . . . D 3 -24.878 -30.017 41.718 1 132.75 ? O44 F0X 502 A 1 HETATM 38 C C11 F0X . . . D 3 -21.081 -31.892 38.778 1 141.53 ? C11 F0X 502 A 1 HETATM 39 C C46 F0X . . . D 3 -19.776 -31.692 39.522 1 143.54 ? C46 F0X 502 A 1 HETATM 40 C C47 F0X . . . D 3 -18.65 -31.092 38.719 1 143.52 ? C47 F0X 502 A 1 HETATM 41 O O49 F0X . . . D 3 -17.481 -31.323 39.106 1 137.16 ? O49 F0X 502 A 1 HETATM 42 O O48 F0X . . . D 3 -18.917 -30.391 37.718 1 146.37 ? O48 F0X 502 A 1 HETATM 43 N N27 F0X . . . D 3 -25.457 -32.365 35.935 1 139.15 ? N27 F0X 502 A 1 HETATM 44 CO CO F0X . . . D 3 -23.614 -33.135 35.323 1 138.63 ? CO F0X 502 A 1 HETATM 45 N N14 F0X . . . D 3 -22.707 -32.465 37.1 1 143.07 ? N14 F0X 502 A 1 HETATM 46 C C10 F0X . . . D 3 -21.387 -32.417 37.411 1 142.86 ? C10 F0X 502 A 1 HETATM 47 C C9 F0X . . . D 3 -20.359 -32.799 36.417 1 143.82 ? C9 F0X 502 A 1 HETATM 48 N N16 F0X . . . D 3 -21.773 -33.901 34.687 1 144.15 ? N16 F0X 502 A 1 HETATM 49 C C5 F0X . . . D 3 -21.53 -34.733 33.652 1 148.24 ? C5 F0X 502 A 1 HETATM 50 C C4 F0X . . . D 3 -22.599 -35.269 32.784 1 151.83 ? C4 F0X 502 A 1 HETATM 51 C C8 F0X . . . D 3 -20.56 -33.665 35.242 1 146.02 ? C8 F0X 502 A 1 HETATM 52 C C07 F0X . . . D 3 -19.344 -34.277 34.603 1 149.85 ? C07 F0X 502 A 1 HETATM 53 C C50 F0X . . . D 3 -18.626 -33.15 33.894 1 147.66 ? C50 F0X 502 A 1 HETATM 54 C C51 F0X . . . D 3 -18.478 -34.965 35.666 1 153.05 ? C51 F0X 502 A 1 HETATM 55 C C52 F0X . . . D 3 -17.329 -34.056 36.087 1 151.88 ? C52 F0X 502 A 1 HETATM 56 O O54 F0X . . . D 3 -16.234 -34.117 35.477 1 151.3 ? O54 F0X 502 A 1 HETATM 57 O O53 F0X . . . D 3 -17.502 -33.271 37.044 1 150.24 ? O53 F0X 502 A 1 HETATM 58 C C06 F0X . . . D 3 -20.088 -35.041 33.558 1 151.42 ? C06 F0X 502 A 1 HETATM 59 C C55 F0X . . . D 3 -19.38 -35.897 32.505 1 154.52 ? C55 F0X 502 A 1 HETATM 60 C C56 F0X . . . D 3 -17.944 -36.368 32.747 1 156.2 ? C56 F0X 502 A 1 HETATM 61 C C57 F0X . . . D 3 -17.03 -35.99 31.598 1 151.93 ? C57 F0X 502 A 1 HETATM 62 O O58 F0X . . . D 3 -17.524 -35.493 30.558 1 158.05 ? O58 F0X 502 A 1 HETATM 63 O O59 F0X . . . D 3 -15.802 -36.21 31.735 1 131.59 ? O59 F0X 502 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 63 #