data_6P68
#
_model_server_result.job_id            409SbjXCnLXA9PkX5RWm0A 
_model_server_result.datetime_utc      '2025-02-05 16:03:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p68 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":801}' 
#
_entry.id    6P68 
#
_exptl.entry_id    6P68 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              551.383 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{3-[(6-{[(2,6-dichloro-3,5-dimethoxyphenyl)carbamoyl](methyl)amino}pyrimidin-4-yl)amino]-1-(2-hydroxyethyl)-1H-pyrazol-4-yl}prop-2-enamide 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.53 
_cell.angle_gamma         90 
_cell.entry_id            6P68 
_cell.length_a            192.5 
_cell.length_b            79.273 
_cell.length_c            96.718 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P68 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,I 1 1 
B,F,G,J 2 1 
C,H,K 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 107 A CYS 563 1_555 D C18 O1Y . A O1Y 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? 
covale ? covale2 B SG CYS 107 B CYS 563 1_555 F C18 O1Y . B O1Y 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? 
covale ? covale3 C SG CYS 107 C CYS 563 1_555 H C18 O1Y . C O1Y 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? 
#
_chem_comp.formula           'C22 H24 Cl2 N8 O5' 
_chem_comp.formula_weight    551.383 
_chem_comp.id                O1Y 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{3-[(6-{[(2,6-dichloro-3,5-dimethoxyphenyl)carbamoyl](methyl)amino}pyrimidin-4-yl)amino]-1-(2-hydroxyethyl)-1H-pyrazol-4-yl}prop-2-enamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 O3 O1Y sing 237 n n 
O3 C12 O1Y sing 238 n n 
CL1 C13 O1Y sing 239 n n 
C12 C13 O1Y doub 240 n y 
C12 C11 O1Y sing 241 n y 
C13 C8 O1Y sing 242 n y 
C11 C10 O1Y doub 243 n y 
C8 N5 O1Y sing 244 n n 
C8 C9 O1Y doub 245 n y 
C10 C9 O1Y sing 246 n y 
C10 O2 O1Y sing 247 n n 
C18 C17 O1Y doub 248 n n 
N5 C7 O1Y sing 249 n n 
C15 O2 O1Y sing 250 n n 
C9 CL2 O1Y sing 251 n n 
C6 N2 O1Y doub 252 n y 
C6 N3 O1Y sing 253 n y 
N2 C5 O1Y sing 254 n y 
C17 C16 O1Y sing 255 n n 
C7 O1 O1Y doub 256 n n 
C7 N4 O1Y sing 257 n n 
N3 C3 O1Y doub 258 n y 
N4 C5 O1Y sing 259 n n 
N4 C14 O1Y sing 260 n n 
C5 C4 O1Y doub 261 n y 
C16 N6 O1Y sing 262 n n 
C16 O4 O1Y doub 263 n n 
N6 C2 O1Y sing 264 n n 
C3 C4 O1Y sing 265 n y 
C3 N1 O1Y sing 266 n n 
N1 C1 O1Y sing 267 n n 
C2 C1 O1Y sing 268 n y 
C2 C20 O1Y doub 269 n y 
C1 N8 O1Y doub 270 n y 
C20 N7 O1Y sing 271 n y 
N8 N7 O1Y sing 272 n y 
N7 C21 O1Y sing 273 n n 
C21 C22 O1Y sing 274 n n 
C22 O5 O1Y sing 275 n n 
C11 H1 O1Y sing 276 n n 
C18 H2 O1Y sing 277 n n 
C18 H3 O1Y sing 278 n n 
C17 H5 O1Y sing 279 n n 
N6 H7 O1Y sing 280 n n 
C20 H8 O1Y sing 281 n n 
C21 H9 O1Y sing 282 n n 
C21 H10 O1Y sing 283 n n 
C22 H11 O1Y sing 284 n n 
C22 H12 O1Y sing 285 n n 
O5 H13 O1Y sing 286 n n 
N1 H14 O1Y sing 287 n n 
C4 H15 O1Y sing 288 n n 
C6 H16 O1Y sing 289 n n 
C14 H17 O1Y sing 290 n n 
C14 H18 O1Y sing 291 n n 
C14 H19 O1Y sing 292 n n 
N5 H20 O1Y sing 293 n n 
C15 H21 O1Y sing 294 n n 
C15 H22 O1Y sing 295 n n 
C15 H23 O1Y sing 296 n n 
C19 H24 O1Y sing 297 n n 
C19 H25 O1Y sing 298 n n 
C19 H26 O1Y sing 299 n n 
#
_atom_sites.entry_id                     6P68 
_atom_sites.fract_transf_matrix[1][1]    0.005195 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001946 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012615 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011041 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 O1Y A 1 801 1 O1Y H3B . 
E 3 SO4 A 1 802 1 SO4 SO4 . 
F 2 O1Y B 1 801 2 O1Y H3B . 
G 3 SO4 B 1 802 2 SO4 SO4 . 
H 2 O1Y C 1 801 3 O1Y H3B . 
I 4 HOH A 1 901 3 HOH HOH . 
J 4 HOH B 1 901 2 HOH HOH . 
J 4 HOH B 2 902 4 HOH HOH . 
K 4 HOH C 1 901 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 O1Y . . . H 2 -1.887 -52.678 -75.092 1 113.85 ? C10 O1Y 801 C 1 
HETATM 2 C C11 O1Y . . . H 2 -2.047 -53.722 -74.216 1 99.14 ? C11 O1Y 801 C 1 
HETATM 3 C C18 O1Y . . . H 2 -11.333 -44.162 -73.723 1 144.81 ? C18 O1Y 801 C 1 
HETATM 4 C C17 O1Y . . . H 2 -11.847 -43.647 -75.048 1 141.54 ? C17 O1Y 801 C 1 
HETATM 5 C C16 O1Y . . . H 2 -12.023 -44.838 -75.953 1 134.93 ? C16 O1Y 801 C 1 
HETATM 6 O O4 O1Y . . . H 2 -13.069 -45.473 -75.97 1 129.99 ? O4 O1Y 801 C 1 
HETATM 7 N N6 O1Y . . . H 2 -10.968 -45.086 -76.723 1 130.53 ? N6 O1Y 801 C 1 
HETATM 8 C C2 O1Y . . . H 2 -10.986 -46.106 -77.566 1 134.08 ? C2 O1Y 801 C 1 
HETATM 9 C C20 O1Y . . . H 2 -12.031 -46.574 -78.212 1 135.47 ? C20 O1Y 801 C 1 
HETATM 10 N N7 O1Y . . . H 2 -11.577 -47.582 -78.936 1 141.14 ? N7 O1Y 801 C 1 
HETATM 11 C C21 O1Y . . . H 2 -12.433 -48.375 -79.805 1 142.36 ? C21 O1Y 801 C 1 
HETATM 12 C C22 O1Y . . . H 2 -12.07 -48.15 -81.264 1 140.58 ? C22 O1Y 801 C 1 
HETATM 13 O O5 O1Y . . . H 2 -12.913 -48.968 -82.069 1 130.79 ? O5 O1Y 801 C 1 
HETATM 14 N N8 O1Y . . . H 2 -10.426 -47.734 -78.785 1 138.6 ? N8 O1Y 801 C 1 
HETATM 15 C C1 O1Y . . . H 2 -9.976 -46.852 -77.909 1 141.54 ? C1 O1Y 801 C 1 
HETATM 16 N N1 O1Y . . . H 2 -8.72 -46.7 -77.51 1 136.56 ? N1 O1Y 801 C 1 
HETATM 17 C C3 O1Y . . . H 2 -8.003 -47.619 -76.871 1 105.41 ? C3 O1Y 801 C 1 
HETATM 18 C C4 O1Y . . . H 2 -7.973 -48.957 -77.208 1 97.04 ? C4 O1Y 801 C 1 
HETATM 19 N N3 O1Y . . . H 2 -7.22 -47.184 -75.904 1 95.96 ? N3 O1Y 801 C 1 
HETATM 20 C C6 O1Y . . . H 2 -6.418 -48.067 -75.231 1 88.34 ? C6 O1Y 801 C 1 
HETATM 21 N N2 O1Y . . . H 2 -6.402 -49.407 -75.552 1 92.39 ? N2 O1Y 801 C 1 
HETATM 22 C C5 O1Y . . . H 2 -7.167 -49.868 -76.524 1 92.8 ? C5 O1Y 801 C 1 
HETATM 23 N N4 O1Y . . . H 2 -7.124 -51.18 -76.821 1 109.93 ? N4 O1Y 801 C 1 
HETATM 24 C C14 O1Y . . . H 2 -8.165 -51.755 -77.697 1 115.54 ? C14 O1Y 801 C 1 
HETATM 25 C C7 O1Y . . . H 2 -6.146 -52.004 -76.348 1 109.57 ? C7 O1Y 801 C 1 
HETATM 26 O O1 O1Y . . . H 2 -6.139 -53.199 -76.659 1 87.98 ? O1 O1Y 801 C 1 
HETATM 27 N N5 O1Y . . . H 2 -5.214 -51.48 -75.514 1 105.85 ? N5 O1Y 801 C 1 
HETATM 28 C C8 O1Y . . . H 2 -4.21 -52.229 -75.05 1 112.38 ? C8 O1Y 801 C 1 
HETATM 29 C C13 O1Y . . . H 2 -4.418 -53.266 -74.176 1 102.86 ? C13 O1Y 801 C 1 
HETATM 30 CL CL1 O1Y . . . H 2 -5.854 -53.618 -73.634 1 97.46 ? CL1 O1Y 801 C 1 
HETATM 31 C C9 O1Y . . . H 2 -2.965 -51.947 -75.507 1 113.47 ? C9 O1Y 801 C 1 
HETATM 32 CL CL2 O1Y . . . H 2 -2.817 -50.812 -76.469 1 115.28 ? CL2 O1Y 801 C 1 
HETATM 33 O O2 O1Y . . . H 2 -0.696 -52.32 -75.598 1 114.91 ? O2 O1Y 801 C 1 
HETATM 34 C C15 O1Y . . . H 2 0.291 -53.131 -75 1 112.6 ? C15 O1Y 801 C 1 
HETATM 35 C C12 O1Y . . . H 2 -3.323 -53.991 -73.765 1 91.92 ? C12 O1Y 801 C 1 
HETATM 36 O O3 O1Y . . . H 2 -3.582 -54.981 -72.916 1 89.44 ? O3 O1Y 801 C 1 
HETATM 37 C C19 O1Y . . . H 2 -2.391 -55.631 -72.535 1 88.02 ? C19 O1Y 801 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           37 
#