data_6P69
#
_model_server_result.job_id            eIPX0XXBpWwqRCXHoExw9A 
_model_server_result.datetime_utc      '2024-11-22 00:15:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p69 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    6P69 
#
_exptl.entry_id    6P69 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.31 
_cell.angle_gamma         90 
_cell.entry_id            6P69 
_cell.length_a            205.365 
_cell.length_b            58.516 
_cell.length_c            66.131 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P69 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 107 A CYS 563 1_555 F C28 O21 . A O21 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? 
covale ? covale2 B SG CYS 107 B CYS 563 1_555 J C28 O21 . B O21 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.619 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6P69 
_atom_sites.fract_transf_matrix[1][1]    0.004869 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001517 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017089 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015839 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 801 2 SO4 SO4 . 
D 3 EDO A 1 802 2 EDO EDO . 
E 3 EDO A 1 803 3 EDO EDO . 
F 4 O21 A 1 804 2 O21 H3B . 
G 2 SO4 B 1 801 1 SO4 SO4 . 
H 2 SO4 B 1 802 3 SO4 SO4 . 
I 3 EDO B 1 803 1 EDO EDO . 
J 4 O21 B 1 804 1 O21 H3B . 
K 5 HOH A 1 901 241 HOH HOH . 
K 5 HOH A 2 902 27 HOH HOH . 
K 5 HOH A 3 903 248 HOH HOH . 
K 5 HOH A 4 904 225 HOH HOH . 
K 5 HOH A 5 905 174 HOH HOH . 
K 5 HOH A 6 906 209 HOH HOH . 
K 5 HOH A 7 907 70 HOH HOH . 
K 5 HOH A 8 908 175 HOH HOH . 
K 5 HOH A 9 909 19 HOH HOH . 
K 5 HOH A 10 910 4 HOH HOH . 
K 5 HOH A 11 911 244 HOH HOH . 
K 5 HOH A 12 912 237 HOH HOH . 
K 5 HOH A 13 913 143 HOH HOH . 
K 5 HOH A 14 914 190 HOH HOH . 
K 5 HOH A 15 915 87 HOH HOH . 
K 5 HOH A 16 916 179 HOH HOH . 
K 5 HOH A 17 917 131 HOH HOH . 
K 5 HOH A 18 918 55 HOH HOH . 
K 5 HOH A 19 919 194 HOH HOH . 
K 5 HOH A 20 920 10 HOH HOH . 
K 5 HOH A 21 921 177 HOH HOH . 
K 5 HOH A 22 922 191 HOH HOH . 
K 5 HOH A 23 923 36 HOH HOH . 
K 5 HOH A 24 924 20 HOH HOH . 
K 5 HOH A 25 925 142 HOH HOH . 
K 5 HOH A 26 926 150 HOH HOH . 
K 5 HOH A 27 927 15 HOH HOH . 
K 5 HOH A 28 928 139 HOH HOH . 
K 5 HOH A 29 929 188 HOH HOH . 
K 5 HOH A 30 930 26 HOH HOH . 
K 5 HOH A 31 931 18 HOH HOH . 
K 5 HOH A 32 932 34 HOH HOH . 
K 5 HOH A 33 933 238 HOH HOH . 
K 5 HOH A 34 934 56 HOH HOH . 
K 5 HOH A 35 935 17 HOH HOH . 
K 5 HOH A 36 936 230 HOH HOH . 
K 5 HOH A 37 937 50 HOH HOH . 
K 5 HOH A 38 938 170 HOH HOH . 
K 5 HOH A 39 939 73 HOH HOH . 
K 5 HOH A 40 940 79 HOH HOH . 
K 5 HOH A 41 941 49 HOH HOH . 
K 5 HOH A 42 942 176 HOH HOH . 
K 5 HOH A 43 943 137 HOH HOH . 
K 5 HOH A 44 944 83 HOH HOH . 
K 5 HOH A 45 945 185 HOH HOH . 
K 5 HOH A 46 946 14 HOH HOH . 
K 5 HOH A 47 947 229 HOH HOH . 
K 5 HOH A 48 948 183 HOH HOH . 
K 5 HOH A 49 949 187 HOH HOH . 
K 5 HOH A 50 950 169 HOH HOH . 
K 5 HOH A 51 951 105 HOH HOH . 
K 5 HOH A 52 952 77 HOH HOH . 
K 5 HOH A 53 953 6 HOH HOH . 
K 5 HOH A 54 954 134 HOH HOH . 
K 5 HOH A 55 955 39 HOH HOH . 
K 5 HOH A 56 956 22 HOH HOH . 
K 5 HOH A 57 957 228 HOH HOH . 
K 5 HOH A 58 958 222 HOH HOH . 
K 5 HOH A 59 959 159 HOH HOH . 
K 5 HOH A 60 960 3 HOH HOH . 
K 5 HOH A 61 961 240 HOH HOH . 
K 5 HOH A 62 962 193 HOH HOH . 
K 5 HOH A 63 963 104 HOH HOH . 
K 5 HOH A 64 964 189 HOH HOH . 
K 5 HOH A 65 965 98 HOH HOH . 
K 5 HOH A 66 966 42 HOH HOH . 
K 5 HOH A 67 967 96 HOH HOH . 
K 5 HOH A 68 968 133 HOH HOH . 
K 5 HOH A 69 969 94 HOH HOH . 
K 5 HOH A 70 970 122 HOH HOH . 
K 5 HOH A 71 971 99 HOH HOH . 
K 5 HOH A 72 972 119 HOH HOH . 
K 5 HOH A 73 973 54 HOH HOH . 
K 5 HOH A 74 974 64 HOH HOH . 
K 5 HOH A 75 975 120 HOH HOH . 
K 5 HOH A 76 976 140 HOH HOH . 
K 5 HOH A 77 977 164 HOH HOH . 
K 5 HOH A 78 978 95 HOH HOH . 
K 5 HOH A 79 979 161 HOH HOH . 
K 5 HOH A 80 980 66 HOH HOH . 
K 5 HOH A 81 981 157 HOH HOH . 
K 5 HOH A 82 982 90 HOH HOH . 
K 5 HOH A 83 983 8 HOH HOH . 
K 5 HOH A 84 984 53 HOH HOH . 
K 5 HOH A 85 985 44 HOH HOH . 
K 5 HOH A 86 986 67 HOH HOH . 
K 5 HOH A 87 987 93 HOH HOH . 
K 5 HOH A 88 988 144 HOH HOH . 
K 5 HOH A 89 989 80 HOH HOH . 
K 5 HOH A 90 990 141 HOH HOH . 
K 5 HOH A 91 991 173 HOH HOH . 
K 5 HOH A 92 992 208 HOH HOH . 
K 5 HOH A 93 993 57 HOH HOH . 
K 5 HOH A 94 994 151 HOH HOH . 
K 5 HOH A 95 995 205 HOH HOH . 
K 5 HOH A 96 996 207 HOH HOH . 
K 5 HOH A 97 997 204 HOH HOH . 
K 5 HOH A 98 998 138 HOH HOH . 
K 5 HOH A 99 999 37 HOH HOH . 
K 5 HOH A 100 1000 48 HOH HOH . 
K 5 HOH A 101 1001 147 HOH HOH . 
K 5 HOH A 102 1002 180 HOH HOH . 
K 5 HOH A 103 1003 213 HOH HOH . 
K 5 HOH A 104 1004 59 HOH HOH . 
K 5 HOH A 105 1005 165 HOH HOH . 
K 5 HOH A 106 1006 239 HOH HOH . 
K 5 HOH A 107 1007 172 HOH HOH . 
K 5 HOH A 108 1008 155 HOH HOH . 
K 5 HOH A 109 1009 69 HOH HOH . 
K 5 HOH A 110 1010 149 HOH HOH . 
K 5 HOH A 111 1011 41 HOH HOH . 
K 5 HOH A 112 1012 113 HOH HOH . 
K 5 HOH A 113 1013 233 HOH HOH . 
K 5 HOH A 114 1014 171 HOH HOH . 
K 5 HOH A 115 1015 158 HOH HOH . 
K 5 HOH A 116 1016 201 HOH HOH . 
K 5 HOH A 117 1017 129 HOH HOH . 
K 5 HOH A 118 1018 192 HOH HOH . 
K 5 HOH A 119 1019 202 HOH HOH . 
K 5 HOH A 120 1020 103 HOH HOH . 
K 5 HOH A 121 1021 115 HOH HOH . 
K 5 HOH A 122 1022 75 HOH HOH . 
K 5 HOH A 123 1023 156 HOH HOH . 
K 5 HOH A 124 1024 74 HOH HOH . 
K 5 HOH A 125 1025 227 HOH HOH . 
K 5 HOH A 126 1026 72 HOH HOH . 
K 5 HOH A 127 1027 82 HOH HOH . 
K 5 HOH A 128 1028 199 HOH HOH . 
L 5 HOH B 1 901 203 HOH HOH . 
L 5 HOH B 2 902 226 HOH HOH . 
L 5 HOH B 3 903 51 HOH HOH . 
L 5 HOH B 4 904 235 HOH HOH . 
L 5 HOH B 5 905 102 HOH HOH . 
L 5 HOH B 6 906 29 HOH HOH . 
L 5 HOH B 7 907 78 HOH HOH . 
L 5 HOH B 8 908 1 HOH HOH . 
L 5 HOH B 9 909 126 HOH HOH . 
L 5 HOH B 10 910 234 HOH HOH . 
L 5 HOH B 11 911 212 HOH HOH . 
L 5 HOH B 12 912 108 HOH HOH . 
L 5 HOH B 13 913 132 HOH HOH . 
L 5 HOH B 14 914 71 HOH HOH . 
L 5 HOH B 15 915 65 HOH HOH . 
L 5 HOH B 16 916 218 HOH HOH . 
L 5 HOH B 17 917 111 HOH HOH . 
L 5 HOH B 18 918 247 HOH HOH . 
L 5 HOH B 19 919 210 HOH HOH . 
L 5 HOH B 20 920 197 HOH HOH . 
L 5 HOH B 21 921 198 HOH HOH . 
L 5 HOH B 22 922 101 HOH HOH . 
L 5 HOH B 23 923 243 HOH HOH . 
L 5 HOH B 24 924 118 HOH HOH . 
L 5 HOH B 25 925 216 HOH HOH . 
L 5 HOH B 26 926 186 HOH HOH . 
L 5 HOH B 27 927 24 HOH HOH . 
L 5 HOH B 28 928 2 HOH HOH . 
L 5 HOH B 29 929 12 HOH HOH . 
L 5 HOH B 30 930 125 HOH HOH . 
L 5 HOH B 31 931 182 HOH HOH . 
L 5 HOH B 32 932 35 HOH HOH . 
L 5 HOH B 33 933 86 HOH HOH . 
L 5 HOH B 34 934 124 HOH HOH . 
L 5 HOH B 35 935 30 HOH HOH . 
L 5 HOH B 36 936 146 HOH HOH . 
L 5 HOH B 37 937 223 HOH HOH . 
L 5 HOH B 38 938 84 HOH HOH . 
L 5 HOH B 39 939 58 HOH HOH . 
L 5 HOH B 40 940 76 HOH HOH . 
L 5 HOH B 41 941 206 HOH HOH . 
L 5 HOH B 42 942 160 HOH HOH . 
L 5 HOH B 43 943 5 HOH HOH . 
L 5 HOH B 44 944 231 HOH HOH . 
L 5 HOH B 45 945 184 HOH HOH . 
L 5 HOH B 46 946 100 HOH HOH . 
L 5 HOH B 47 947 127 HOH HOH . 
L 5 HOH B 48 948 246 HOH HOH . 
L 5 HOH B 49 949 32 HOH HOH . 
L 5 HOH B 50 950 211 HOH HOH . 
L 5 HOH B 51 951 168 HOH HOH . 
L 5 HOH B 52 952 68 HOH HOH . 
L 5 HOH B 53 953 45 HOH HOH . 
L 5 HOH B 54 954 97 HOH HOH . 
L 5 HOH B 55 955 85 HOH HOH . 
L 5 HOH B 56 956 215 HOH HOH . 
L 5 HOH B 57 957 112 HOH HOH . 
L 5 HOH B 58 958 121 HOH HOH . 
L 5 HOH B 59 959 21 HOH HOH . 
L 5 HOH B 60 960 81 HOH HOH . 
L 5 HOH B 61 961 196 HOH HOH . 
L 5 HOH B 62 962 136 HOH HOH . 
L 5 HOH B 63 963 153 HOH HOH . 
L 5 HOH B 64 964 88 HOH HOH . 
L 5 HOH B 65 965 130 HOH HOH . 
L 5 HOH B 66 966 13 HOH HOH . 
L 5 HOH B 67 967 47 HOH HOH . 
L 5 HOH B 68 968 135 HOH HOH . 
L 5 HOH B 69 969 52 HOH HOH . 
L 5 HOH B 70 970 38 HOH HOH . 
L 5 HOH B 71 971 92 HOH HOH . 
L 5 HOH B 72 972 89 HOH HOH . 
L 5 HOH B 73 973 110 HOH HOH . 
L 5 HOH B 74 974 128 HOH HOH . 
L 5 HOH B 75 975 91 HOH HOH . 
L 5 HOH B 76 976 107 HOH HOH . 
L 5 HOH B 77 977 232 HOH HOH . 
L 5 HOH B 78 978 63 HOH HOH . 
L 5 HOH B 79 979 221 HOH HOH . 
L 5 HOH B 80 980 7 HOH HOH . 
L 5 HOH B 81 981 46 HOH HOH . 
L 5 HOH B 82 982 62 HOH HOH . 
L 5 HOH B 83 983 16 HOH HOH . 
L 5 HOH B 84 984 217 HOH HOH . 
L 5 HOH B 85 985 214 HOH HOH . 
L 5 HOH B 86 986 9 HOH HOH . 
L 5 HOH B 87 987 60 HOH HOH . 
L 5 HOH B 88 988 25 HOH HOH . 
L 5 HOH B 89 989 11 HOH HOH . 
L 5 HOH B 90 990 123 HOH HOH . 
L 5 HOH B 91 991 40 HOH HOH . 
L 5 HOH B 92 992 242 HOH HOH . 
L 5 HOH B 93 993 23 HOH HOH . 
L 5 HOH B 94 994 163 HOH HOH . 
L 5 HOH B 95 995 117 HOH HOH . 
L 5 HOH B 96 996 224 HOH HOH . 
L 5 HOH B 97 997 145 HOH HOH . 
L 5 HOH B 98 998 33 HOH HOH . 
L 5 HOH B 99 999 28 HOH HOH . 
L 5 HOH B 100 1000 61 HOH HOH . 
L 5 HOH B 101 1001 31 HOH HOH . 
L 5 HOH B 102 1002 219 HOH HOH . 
L 5 HOH B 103 1003 154 HOH HOH . 
L 5 HOH B 104 1004 178 HOH HOH . 
L 5 HOH B 105 1005 245 HOH HOH . 
L 5 HOH B 106 1006 162 HOH HOH . 
L 5 HOH B 107 1007 148 HOH HOH . 
L 5 HOH B 108 1008 220 HOH HOH . 
L 5 HOH B 109 1009 43 HOH HOH . 
L 5 HOH B 110 1010 109 HOH HOH . 
L 5 HOH B 111 1011 114 HOH HOH . 
L 5 HOH B 112 1012 181 HOH HOH . 
L 5 HOH B 113 1013 236 HOH HOH . 
L 5 HOH B 114 1014 167 HOH HOH . 
L 5 HOH B 115 1015 106 HOH HOH . 
L 5 HOH B 116 1016 166 HOH HOH . 
L 5 HOH B 117 1017 195 HOH HOH . 
L 5 HOH B 118 1018 200 HOH HOH . 
L 5 HOH B 119 1019 116 HOH HOH . 
L 5 HOH B 120 1020 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -22.962 -37.977 31.753 1 32.44 ? C1 EDO 802 A 1 
HETATM 2 O O1 EDO . . . D 3 -23.064 -39.009 30.79 1 27.94 ? O1 EDO 802 A 1 
HETATM 3 C C2 EDO . . . D 3 -23.386 -36.638 31.177 1 35.12 ? C2 EDO 802 A 1 
HETATM 4 O O2 EDO . . . D 3 -24.784 -36.374 31.1 1 32.33 ? O2 EDO 802 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#