data_6P6J
#
_model_server_result.job_id            pfv4B0-C7JvyYjBOH5HiBg 
_model_server_result.datetime_utc      '2024-11-21 14:31:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p6j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    6P6J 
#
_exptl.entry_id    6P6J 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              481.652 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            yersiniabactin 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6P6J 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P6J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C N1 O34 . A O34 701 1_555 D FE FE . A FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc2 C N2 O34 . A O34 701 1_555 D FE FE . A FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc3 C N3 O34 . A O34 701 1_555 D FE FE . A FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc4 C O1 O34 . A O34 701 1_555 D FE FE . A FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? 
metalc ? metalc5 C O2 O34 . A O34 701 1_555 D FE FE . A FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? 
metalc ? metalc6 C O3 O34 . A O34 701 1_555 D FE FE . A FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
#
_chem_comp.formula           'C21 H27 N3 O4 S3' 
_chem_comp.formula_weight    481.652 
_chem_comp.id                O34 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              yersiniabactin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(4S)-2-[(1S)-1-hydroxy-1-{(2R,4R)-2-[(4R)-2-(2-hydroxyphenyl)-4,5-dihydro-1,3-thiazol-4-yl]-1,3-thiazolidin-4-yl}-2-met hylpropan-2-yl]-4-methyl-4,5-dihydro-1,3-thiazole-4-carboxylic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C14 O34 sing 235 n n 
S2 C11 O34 sing 236 n n 
S2 C10 O34 sing 237 n n 
C11 C12 O34 sing 238 n n 
C12 N2 O34 sing 239 n n 
C12 C13 O34 sing 240 n n 
S3 C17 O34 sing 241 n n 
S3 C18 O34 sing 242 n n 
C14 C13 O34 sing 243 n n 
C14 C17 O34 sing 244 n n 
C14 C16 O34 sing 245 n n 
C10 N2 O34 sing 246 n n 
C10 C9 O34 sing 247 n n 
C13 O2 O34 sing 248 n n 
C17 N3 O34 doub 249 n n 
C18 C19 O34 sing 250 n n 
N3 C19 O34 sing 251 n n 
C9 C8 O34 sing 252 n n 
C9 N1 O34 sing 253 n n 
C19 C21 O34 sing 254 n n 
C19 C20 O34 sing 255 n n 
C8 S1 O34 sing 256 n n 
C21 O4 O34 doub 257 n n 
C21 O3 O34 sing 258 n n 
N1 C7 O34 doub 259 n n 
S1 C7 O34 sing 260 n n 
C7 C6 O34 sing 261 n n 
O1 C1 O34 sing 262 n n 
C6 C1 O34 doub 263 n y 
C6 C5 O34 sing 264 n y 
C1 C2 O34 sing 265 n y 
C5 C4 O34 doub 266 n y 
C2 C3 O34 doub 267 n y 
C4 C3 O34 sing 268 n y 
N2 H1 O34 sing 269 n n 
O1 H5 O34 sing 270 n n 
O2 H6 O34 sing 271 n n 
O3 H7 O34 sing 272 n n 
C2 H8 O34 sing 273 n n 
C3 H9 O34 sing 274 n n 
C4 H10 O34 sing 275 n n 
C5 H11 O34 sing 276 n n 
C8 H12 O34 sing 277 n n 
C8 H13 O34 sing 278 n n 
C9 H14 O34 sing 279 n n 
C10 H15 O34 sing 280 n n 
C11 H16 O34 sing 281 n n 
C11 H17 O34 sing 282 n n 
C12 H18 O34 sing 283 n n 
C13 H19 O34 sing 284 n n 
C15 H20 O34 sing 285 n n 
C15 H21 O34 sing 286 n n 
C15 H22 O34 sing 287 n n 
C16 H23 O34 sing 288 n n 
C16 H24 O34 sing 289 n n 
C16 H25 O34 sing 290 n n 
C18 H27 O34 sing 291 n n 
C18 H28 O34 sing 292 n n 
C20 H29 O34 sing 293 n n 
C20 H30 O34 sing 294 n n 
C20 H31 O34 sing 295 n n 
#
_atom_sites.entry_id                     6P6J 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 O34 A 1 701 601 O34 YBT . 
D 4 FE A 1 702 600 FE FE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 O34 . . . C 3 132.353 147.795 153.027 1 0 ? N1 O34 701 A 1 
HETATM 2 N N2 O34 . . . C 3 133.581 147.611 150.624 1 0 ? N2 O34 701 A 1 
HETATM 3 N N3 O34 . . . C 3 136.326 147.448 151.84 1 0 ? N3 O34 701 A 1 
HETATM 4 O O1 O34 . . . C 3 134.595 148.094 154.572 1 0 ? O1 O34 701 A 1 
HETATM 5 O O2 O34 . . . C 3 134.583 149.608 152.004 1 0 ? O2 O34 701 A 1 
HETATM 6 O O3 O34 . . . C 3 134.615 145.777 152.812 1 0 ? O3 O34 701 A 1 
HETATM 7 O O4 O34 . . . C 3 135.894 143.992 152.524 1 0 ? O4 O34 701 A 1 
HETATM 8 S S1 O34 . . . C 3 129.974 147.823 153.999 1 0 ? S1 O34 701 A 1 
HETATM 9 S S2 O34 . . . C 3 131.506 148.298 149.117 1 0 ? S2 O34 701 A 1 
HETATM 10 S S3 O34 . . . C 3 138.073 147.121 149.979 1 0 ? S3 O34 701 A 1 
HETATM 11 C C1 O34 . . . C 3 133.792 147.773 155.557 1 0 ? C1 O34 701 A 1 
HETATM 12 C C2 O34 . . . C 3 134.347 147.622 156.857 1 0 ? C2 O34 701 A 1 
HETATM 13 C C3 O34 . . . C 3 133.545 147.317 157.934 1 0 ? C3 O34 701 A 1 
HETATM 14 C C4 O34 . . . C 3 132.163 147.168 157.788 1 0 ? C4 O34 701 A 1 
HETATM 15 C C5 O34 . . . C 3 131.588 147.329 156.544 1 0 ? C5 O34 701 A 1 
HETATM 16 C C6 O34 . . . C 3 132.396 147.593 155.437 1 0 ? C6 O34 701 A 1 
HETATM 17 C C7 O34 . . . C 3 131.752 147.719 154.135 1 0 ? C7 O34 701 A 1 
HETATM 18 C C8 O34 . . . C 3 130.102 147.572 152.209 1 0 ? C8 O34 701 A 1 
HETATM 19 C C9 O34 . . . C 3 131.501 148.087 151.866 1 0 ? C9 O34 701 A 1 
HETATM 20 C C10 O34 . . . C 3 132.11 147.474 150.609 1 0 ? C10 O34 701 A 1 
HETATM 21 C C11 O34 . . . C 3 132.8 149.552 149.351 1 0 ? C11 O34 701 A 1 
HETATM 22 C C12 O34 . . . C 3 134.037 148.777 149.805 1 0 ? C12 O34 701 A 1 
HETATM 23 C C13 O34 . . . C 3 134.961 149.687 150.667 1 0 ? C13 O34 701 A 1 
HETATM 24 C C14 O34 . . . C 3 136.481 149.442 150.452 1 0 ? C14 O34 701 A 1 
HETATM 25 C C15 O34 . . . C 3 136.858 149.757 148.999 1 0 ? C15 O34 701 A 1 
HETATM 26 C C16 O34 . . . C 3 137.276 150.366 151.4 1 0 ? C16 O34 701 A 1 
HETATM 27 C C17 O34 . . . C 3 136.855 148.033 150.827 1 0 ? C17 O34 701 A 1 
HETATM 28 C C18 O34 . . . C 3 137.674 145.632 150.948 1 0 ? C18 O34 701 A 1 
HETATM 29 C C19 O34 . . . C 3 136.884 146.129 152.154 1 0 ? C19 O34 701 A 1 
HETATM 30 C C20 O34 . . . C 3 137.786 146.274 153.391 1 0 ? C20 O34 701 A 1 
HETATM 31 C C21 O34 . . . C 3 135.711 145.204 152.505 1 0 ? C21 O34 701 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           419 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#