data_6P6X # _model_server_result.job_id 2ufS0MHmtq3Z4stSYcGxjg _model_server_result.datetime_utc '2024-11-04 22:44:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p6x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2007}' # _entry.id 6P6X # _exptl.entry_id 6P6X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P6X _cell.length_a 124.449 _cell.length_b 124.449 _cell.length_c 193.339 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P6X _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -124.449 -124.449 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -124.449 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -124.449 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 378 n n O1 H1P PX4 sing 379 n n O2 P1 PX4 doub 380 n n P1 O3 PX4 sing 381 n n P1 O4 PX4 sing 382 n n O3 C1 PX4 sing 383 n n C1 C2 PX4 sing 384 n n C1 H1 PX4 sing 385 n n C1 H2 PX4 sing 386 n n C2 N1 PX4 sing 387 n n C2 H3 PX4 sing 388 n n C2 H4 PX4 sing 389 n n N1 C3 PX4 sing 390 n n N1 C4 PX4 sing 391 n n N1 C5 PX4 sing 392 n n C3 H5 PX4 sing 393 n n C3 H6 PX4 sing 394 n n C3 H7 PX4 sing 395 n n C4 H8 PX4 sing 396 n n C4 H9 PX4 sing 397 n n C4 H10 PX4 sing 398 n n C5 H11 PX4 sing 399 n n C5 H12 PX4 sing 400 n n C5 H13 PX4 sing 401 n n O4 C6 PX4 sing 402 n n C6 C7 PX4 sing 403 n n C6 H14 PX4 sing 404 n n C6 H15 PX4 sing 405 n n C7 C8 PX4 sing 406 n n C7 O7 PX4 sing 407 n n C7 H16 PX4 sing 408 n n C8 O5 PX4 sing 409 n n C8 H17 PX4 sing 410 n n C8 H18 PX4 sing 411 n n O5 C9 PX4 sing 412 n n C9 O6 PX4 doub 413 n n C9 C10 PX4 sing 414 n n C10 C11 PX4 sing 415 n n C10 H19 PX4 sing 416 n n C10 H20 PX4 sing 417 n n C11 C12 PX4 sing 418 n n C11 H21 PX4 sing 419 n n C11 H22 PX4 sing 420 n n C12 C13 PX4 sing 421 n n C12 H23 PX4 sing 422 n n C12 H24 PX4 sing 423 n n C13 C14 PX4 sing 424 n n C13 H25 PX4 sing 425 n n C13 H26 PX4 sing 426 n n C14 C15 PX4 sing 427 n n C14 H27 PX4 sing 428 n n C14 H28 PX4 sing 429 n n C15 C16 PX4 sing 430 n n C15 H29 PX4 sing 431 n n C15 H30 PX4 sing 432 n n C16 C17 PX4 sing 433 n n C16 H31 PX4 sing 434 n n C16 H32 PX4 sing 435 n n C17 C18 PX4 sing 436 n n C17 H33 PX4 sing 437 n n C17 H34 PX4 sing 438 n n C18 C19 PX4 sing 439 n n C18 H35 PX4 sing 440 n n C18 H36 PX4 sing 441 n n C19 C20 PX4 sing 442 n n C19 H37 PX4 sing 443 n n C19 H38 PX4 sing 444 n n C20 C21 PX4 sing 445 n n C20 H39 PX4 sing 446 n n C20 H40 PX4 sing 447 n n C21 C22 PX4 sing 448 n n C21 H41 PX4 sing 449 n n C21 H42 PX4 sing 450 n n C22 H43 PX4 sing 451 n n C22 H44 PX4 sing 452 n n C22 H45 PX4 sing 453 n n O7 C23 PX4 sing 454 n n C23 O8 PX4 doub 455 n n C23 C24 PX4 sing 456 n n C24 C25 PX4 sing 457 n n C24 H46 PX4 sing 458 n n C24 H47 PX4 sing 459 n n C25 C26 PX4 sing 460 n n C25 H48 PX4 sing 461 n n C25 H49 PX4 sing 462 n n C26 C27 PX4 sing 463 n n C26 H50 PX4 sing 464 n n C26 H51 PX4 sing 465 n n C27 C28 PX4 sing 466 n n C27 H52 PX4 sing 467 n n C27 H53 PX4 sing 468 n n C28 C29 PX4 sing 469 n n C28 H54 PX4 sing 470 n n C28 H55 PX4 sing 471 n n C29 C30 PX4 sing 472 n n C29 H56 PX4 sing 473 n n C29 H57 PX4 sing 474 n n C30 C31 PX4 sing 475 n n C30 H58 PX4 sing 476 n n C30 H59 PX4 sing 477 n n C31 C32 PX4 sing 478 n n C31 H60 PX4 sing 479 n n C31 H61 PX4 sing 480 n n C32 C33 PX4 sing 481 n n C32 H62 PX4 sing 482 n n C32 H63 PX4 sing 483 n n C33 C34 PX4 sing 484 n n C33 H64 PX4 sing 485 n n C33 H65 PX4 sing 486 n n C34 C35 PX4 sing 487 n n C34 H66 PX4 sing 488 n n C34 H67 PX4 sing 489 n n C35 C36 PX4 sing 490 n n C35 H68 PX4 sing 491 n n C35 H69 PX4 sing 492 n n C36 H70 PX4 sing 493 n n C36 H71 PX4 sing 494 n n C36 H72 PX4 sing 495 n n # _atom_sites.entry_id 6P6X _atom_sites.fract_transf_matrix[1][1] 0.008035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PX4 A 1 2001 2001 PX4 PX4 . C 2 PX4 A 1 2002 2002 PX4 PX4 . D 2 PX4 A 1 2003 2003 PX4 PX4 . E 2 PX4 A 1 2004 2004 PX4 PX4 . F 2 PX4 A 1 2005 2005 PX4 PX4 . G 2 PX4 A 1 2006 2006 PX4 PX4 . H 2 PX4 A 1 2007 2007 PX4 PX4 . I 2 PX4 A 1 2008 2008 PX4 PX4 . J 2 PX4 A 1 2009 2009 PX4 PX4 . K 3 CPS A 1 2010 3001 CPS CPS . L 3 CPS A 1 2011 3002 CPS CPS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . H 2 -36.762 -57.332 -52.516 1 188.02 ? O1 PX4 2007 A 1 HETATM 2 O O2 PX4 . . . H 2 -36.589 -58.951 -54.528 1 187.69 ? O2 PX4 2007 A 1 HETATM 3 P P1 PX4 . . . H 2 -35.938 -57.952 -53.611 1 190.86 ? P1 PX4 2007 A 1 HETATM 4 O O3 PX4 . . . H 2 -35.35 -56.742 -54.492 1 189.27 ? O3 PX4 2007 A 1 HETATM 5 O O4 PX4 . . . H 2 -34.611 -58.617 -52.986 1 170 ? O4 PX4 2007 A 1 HETATM 6 C C6 PX4 . . . H 2 -33.464 -58.913 -53.841 1 155.27 ? C6 PX4 2007 A 1 HETATM 7 C C7 PX4 . . . H 2 -33.755 -60.118 -54.71 1 150.68 ? C7 PX4 2007 A 1 HETATM 8 C C8 PX4 . . . H 2 -32.645 -60.45 -55.685 1 144.17 ? C8 PX4 2007 A 1 HETATM 9 O O5 PX4 . . . H 2 -33.13 -61.464 -56.596 1 136.73 ? O5 PX4 2007 A 1 HETATM 10 C C9 PX4 . . . H 2 -32.807 -61.345 -57.884 1 123.65 ? C9 PX4 2007 A 1 HETATM 11 O O6 PX4 . . . H 2 -31.696 -61.063 -58.257 1 131.34 ? O6 PX4 2007 A 1 HETATM 12 C C10 PX4 . . . H 2 -33.985 -61.663 -58.789 1 106.39 ? C10 PX4 2007 A 1 HETATM 13 C C11 PX4 . . . H 2 -34.14 -60.734 -59.973 1 95.01 ? C11 PX4 2007 A 1 HETATM 14 C C12 PX4 . . . H 2 -33.722 -61.362 -61.306 1 90.04 ? C12 PX4 2007 A 1 HETATM 15 C C13 PX4 . . . H 2 -34.765 -61.296 -62.421 1 86.52 ? C13 PX4 2007 A 1 HETATM 16 C C14 PX4 . . . H 2 -35.039 -59.9 -62.993 1 81.54 ? C14 PX4 2007 A 1 HETATM 17 C C15 PX4 . . . H 2 -34.593 -59.667 -64.441 1 76.33 ? C15 PX4 2007 A 1 HETATM 18 C C16 PX4 . . . H 2 -35.645 -59.926 -65.499 1 68.28 ? C16 PX4 2007 A 1 HETATM 19 O O7 PX4 . . . H 2 -33.992 -61.261 -53.843 1 136.51 ? O7 PX4 2007 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #