data_6P78
#
_model_server_result.job_id            vTwWXga2GE0mhEfRrNn2dQ 
_model_server_result.datetime_utc      '2024-11-23 00:32:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    6P78 
#
_exptl.entry_id    6P78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6P78 
_cell.length_a            57.606 
_cell.length_b            57.606 
_cell.length_c            152.414 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 175 A PRO 153 1_555 A N SMC 176 A SMC 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C SMC 176 A SMC 154 1_555 A N LEU 177 A LEU 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A SG CYS 45 A CYS 23 1_555 B FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc2 A SG CYS 50 A CYS 28 1_555 B FE3 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc3 A SG CYS 53 A CYS 31 1_555 B FE4 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc4 B FE2 SF4 . A SF4 501 1_555 D OXT SAM . A SAM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc5 B FE2 SF4 . A SF4 501 1_555 D N SAM . A SAM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 378 n n 
FE1 S3 SF4 sing 379 n n 
FE1 S4 SF4 sing 380 n n 
FE2 S1 SF4 sing 381 n n 
FE2 S3 SF4 sing 382 n n 
FE2 S4 SF4 sing 383 n n 
FE3 S1 SF4 sing 384 n n 
FE3 S2 SF4 sing 385 n n 
FE3 S4 SF4 sing 386 n n 
FE4 S1 SF4 sing 387 n n 
FE4 S2 SF4 sing 388 n n 
FE4 S3 SF4 sing 389 n n 
#
_atom_sites.entry_id                     6P78 
_atom_sites.fract_transf_matrix[1][1]    0.017359 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017359 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006561 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 501 501 SF4 SF4 . 
C 3 QUG A 1 502 504 QUG quG . 
D 4 SAM A 1 503 601 SAM SAM . 
E 5 HOH A 1 601 125 HOH HOH . 
E 5 HOH A 2 602 65 HOH HOH . 
E 5 HOH A 3 603 221 HOH HOH . 
E 5 HOH A 4 604 164 HOH HOH . 
E 5 HOH A 5 605 119 HOH HOH . 
E 5 HOH A 6 606 169 HOH HOH . 
E 5 HOH A 7 607 108 HOH HOH . 
E 5 HOH A 8 608 183 HOH HOH . 
E 5 HOH A 9 609 34 HOH HOH . 
E 5 HOH A 10 610 78 HOH HOH . 
E 5 HOH A 11 611 94 HOH HOH . 
E 5 HOH A 12 612 105 HOH HOH . 
E 5 HOH A 13 613 242 HOH HOH . 
E 5 HOH A 14 614 241 HOH HOH . 
E 5 HOH A 15 615 43 HOH HOH . 
E 5 HOH A 16 616 58 HOH HOH . 
E 5 HOH A 17 617 230 HOH HOH . 
E 5 HOH A 18 618 202 HOH HOH . 
E 5 HOH A 19 619 13 HOH HOH . 
E 5 HOH A 20 620 47 HOH HOH . 
E 5 HOH A 21 621 46 HOH HOH . 
E 5 HOH A 22 622 236 HOH HOH . 
E 5 HOH A 23 623 118 HOH HOH . 
E 5 HOH A 24 624 156 HOH HOH . 
E 5 HOH A 25 625 41 HOH HOH . 
E 5 HOH A 26 626 147 HOH HOH . 
E 5 HOH A 27 627 176 HOH HOH . 
E 5 HOH A 28 628 26 HOH HOH . 
E 5 HOH A 29 629 146 HOH HOH . 
E 5 HOH A 30 630 1 HOH HOH . 
E 5 HOH A 31 631 7 HOH HOH . 
E 5 HOH A 32 632 240 HOH HOH . 
E 5 HOH A 33 633 117 HOH HOH . 
E 5 HOH A 34 634 128 HOH HOH . 
E 5 HOH A 35 635 35 HOH HOH . 
E 5 HOH A 36 636 23 HOH HOH . 
E 5 HOH A 37 637 189 HOH HOH . 
E 5 HOH A 38 638 163 HOH HOH . 
E 5 HOH A 39 639 9 HOH HOH . 
E 5 HOH A 40 640 246 HOH HOH . 
E 5 HOH A 41 641 79 HOH HOH . 
E 5 HOH A 42 642 190 HOH HOH . 
E 5 HOH A 43 643 10 HOH HOH . 
E 5 HOH A 44 644 4 HOH HOH . 
E 5 HOH A 45 645 68 HOH HOH . 
E 5 HOH A 46 646 121 HOH HOH . 
E 5 HOH A 47 647 143 HOH HOH . 
E 5 HOH A 48 648 57 HOH HOH . 
E 5 HOH A 49 649 53 HOH HOH . 
E 5 HOH A 50 650 100 HOH HOH . 
E 5 HOH A 51 651 113 HOH HOH . 
E 5 HOH A 52 652 203 HOH HOH . 
E 5 HOH A 53 653 97 HOH HOH . 
E 5 HOH A 54 654 15 HOH HOH . 
E 5 HOH A 55 655 218 HOH HOH . 
E 5 HOH A 56 656 153 HOH HOH . 
E 5 HOH A 57 657 130 HOH HOH . 
E 5 HOH A 58 658 201 HOH HOH . 
E 5 HOH A 59 659 20 HOH HOH . 
E 5 HOH A 60 660 55 HOH HOH . 
E 5 HOH A 61 661 84 HOH HOH . 
E 5 HOH A 62 662 69 HOH HOH . 
E 5 HOH A 63 663 132 HOH HOH . 
E 5 HOH A 64 664 19 HOH HOH . 
E 5 HOH A 65 665 92 HOH HOH . 
E 5 HOH A 66 666 6 HOH HOH . 
E 5 HOH A 67 667 2 HOH HOH . 
E 5 HOH A 68 668 98 HOH HOH . 
E 5 HOH A 69 669 63 HOH HOH . 
E 5 HOH A 70 670 33 HOH HOH . 
E 5 HOH A 71 671 71 HOH HOH . 
E 5 HOH A 72 672 37 HOH HOH . 
E 5 HOH A 73 673 112 HOH HOH . 
E 5 HOH A 74 674 142 HOH HOH . 
E 5 HOH A 75 675 75 HOH HOH . 
E 5 HOH A 76 676 181 HOH HOH . 
E 5 HOH A 77 677 51 HOH HOH . 
E 5 HOH A 78 678 150 HOH HOH . 
E 5 HOH A 79 679 186 HOH HOH . 
E 5 HOH A 80 680 56 HOH HOH . 
E 5 HOH A 81 681 106 HOH HOH . 
E 5 HOH A 82 682 14 HOH HOH . 
E 5 HOH A 83 683 80 HOH HOH . 
E 5 HOH A 84 684 155 HOH HOH . 
E 5 HOH A 85 685 209 HOH HOH . 
E 5 HOH A 86 686 127 HOH HOH . 
E 5 HOH A 87 687 86 HOH HOH . 
E 5 HOH A 88 688 30 HOH HOH . 
E 5 HOH A 89 689 21 HOH HOH . 
E 5 HOH A 90 690 136 HOH HOH . 
E 5 HOH A 91 691 48 HOH HOH . 
E 5 HOH A 92 692 167 HOH HOH . 
E 5 HOH A 93 693 157 HOH HOH . 
E 5 HOH A 94 694 228 HOH HOH . 
E 5 HOH A 95 695 85 HOH HOH . 
E 5 HOH A 96 696 40 HOH HOH . 
E 5 HOH A 97 697 166 HOH HOH . 
E 5 HOH A 98 698 3 HOH HOH . 
E 5 HOH A 99 699 96 HOH HOH . 
E 5 HOH A 100 700 139 HOH HOH . 
E 5 HOH A 101 701 39 HOH HOH . 
E 5 HOH A 102 702 42 HOH HOH . 
E 5 HOH A 103 703 101 HOH HOH . 
E 5 HOH A 104 704 8 HOH HOH . 
E 5 HOH A 105 705 107 HOH HOH . 
E 5 HOH A 106 706 111 HOH HOH . 
E 5 HOH A 107 707 27 HOH HOH . 
E 5 HOH A 108 708 16 HOH HOH . 
E 5 HOH A 109 709 73 HOH HOH . 
E 5 HOH A 110 710 231 HOH HOH . 
E 5 HOH A 111 711 64 HOH HOH . 
E 5 HOH A 112 712 134 HOH HOH . 
E 5 HOH A 113 713 60 HOH HOH . 
E 5 HOH A 114 714 22 HOH HOH . 
E 5 HOH A 115 715 24 HOH HOH . 
E 5 HOH A 116 716 244 HOH HOH . 
E 5 HOH A 117 717 144 HOH HOH . 
E 5 HOH A 118 718 36 HOH HOH . 
E 5 HOH A 119 719 70 HOH HOH . 
E 5 HOH A 120 720 18 HOH HOH . 
E 5 HOH A 121 721 5 HOH HOH . 
E 5 HOH A 122 722 151 HOH HOH . 
E 5 HOH A 123 723 44 HOH HOH . 
E 5 HOH A 124 724 87 HOH HOH . 
E 5 HOH A 125 725 123 HOH HOH . 
E 5 HOH A 126 726 12 HOH HOH . 
E 5 HOH A 127 727 77 HOH HOH . 
E 5 HOH A 128 728 32 HOH HOH . 
E 5 HOH A 129 729 49 HOH HOH . 
E 5 HOH A 130 730 54 HOH HOH . 
E 5 HOH A 131 731 122 HOH HOH . 
E 5 HOH A 132 732 25 HOH HOH . 
E 5 HOH A 133 733 45 HOH HOH . 
E 5 HOH A 134 734 129 HOH HOH . 
E 5 HOH A 135 735 74 HOH HOH . 
E 5 HOH A 136 736 11 HOH HOH . 
E 5 HOH A 137 737 138 HOH HOH . 
E 5 HOH A 138 738 141 HOH HOH . 
E 5 HOH A 139 739 115 HOH HOH . 
E 5 HOH A 140 740 223 HOH HOH . 
E 5 HOH A 141 741 110 HOH HOH . 
E 5 HOH A 142 742 104 HOH HOH . 
E 5 HOH A 143 743 90 HOH HOH . 
E 5 HOH A 144 744 184 HOH HOH . 
E 5 HOH A 145 745 50 HOH HOH . 
E 5 HOH A 146 746 82 HOH HOH . 
E 5 HOH A 147 747 52 HOH HOH . 
E 5 HOH A 148 748 67 HOH HOH . 
E 5 HOH A 149 749 212 HOH HOH . 
E 5 HOH A 150 750 116 HOH HOH . 
E 5 HOH A 151 751 179 HOH HOH . 
E 5 HOH A 152 752 59 HOH HOH . 
E 5 HOH A 153 753 91 HOH HOH . 
E 5 HOH A 154 754 103 HOH HOH . 
E 5 HOH A 155 755 124 HOH HOH . 
E 5 HOH A 156 756 220 HOH HOH . 
E 5 HOH A 157 757 204 HOH HOH . 
E 5 HOH A 158 758 66 HOH HOH . 
E 5 HOH A 159 759 217 HOH HOH . 
E 5 HOH A 160 760 95 HOH HOH . 
E 5 HOH A 161 761 224 HOH HOH . 
E 5 HOH A 162 762 109 HOH HOH . 
E 5 HOH A 163 763 28 HOH HOH . 
E 5 HOH A 164 764 222 HOH HOH . 
E 5 HOH A 165 765 191 HOH HOH . 
E 5 HOH A 166 766 193 HOH HOH . 
E 5 HOH A 167 767 114 HOH HOH . 
E 5 HOH A 168 768 29 HOH HOH . 
E 5 HOH A 169 769 145 HOH HOH . 
E 5 HOH A 170 770 215 HOH HOH . 
E 5 HOH A 171 771 195 HOH HOH . 
E 5 HOH A 172 772 149 HOH HOH . 
E 5 HOH A 173 773 88 HOH HOH . 
E 5 HOH A 174 774 161 HOH HOH . 
E 5 HOH A 175 775 237 HOH HOH . 
E 5 HOH A 176 776 137 HOH HOH . 
E 5 HOH A 177 777 76 HOH HOH . 
E 5 HOH A 178 778 31 HOH HOH . 
E 5 HOH A 179 779 174 HOH HOH . 
E 5 HOH A 180 780 177 HOH HOH . 
E 5 HOH A 181 781 89 HOH HOH . 
E 5 HOH A 182 782 211 HOH HOH . 
E 5 HOH A 183 783 62 HOH HOH . 
E 5 HOH A 184 784 135 HOH HOH . 
E 5 HOH A 185 785 154 HOH HOH . 
E 5 HOH A 186 786 72 HOH HOH . 
E 5 HOH A 187 787 83 HOH HOH . 
E 5 HOH A 188 788 170 HOH HOH . 
E 5 HOH A 189 789 38 HOH HOH . 
E 5 HOH A 190 790 197 HOH HOH . 
E 5 HOH A 191 791 233 HOH HOH . 
E 5 HOH A 192 792 160 HOH HOH . 
E 5 HOH A 193 793 152 HOH HOH . 
E 5 HOH A 194 794 199 HOH HOH . 
E 5 HOH A 195 795 81 HOH HOH . 
E 5 HOH A 196 796 126 HOH HOH . 
E 5 HOH A 197 797 185 HOH HOH . 
E 5 HOH A 198 798 102 HOH HOH . 
E 5 HOH A 199 799 158 HOH HOH . 
E 5 HOH A 200 800 175 HOH HOH . 
E 5 HOH A 201 801 131 HOH HOH . 
E 5 HOH A 202 802 17 HOH HOH . 
E 5 HOH A 203 803 178 HOH HOH . 
E 5 HOH A 204 804 148 HOH HOH . 
E 5 HOH A 205 805 99 HOH HOH . 
E 5 HOH A 206 806 172 HOH HOH . 
E 5 HOH A 207 807 61 HOH HOH . 
E 5 HOH A 208 808 120 HOH HOH . 
E 5 HOH A 209 809 226 HOH HOH . 
E 5 HOH A 210 810 229 HOH HOH . 
E 5 HOH A 211 811 214 HOH HOH . 
E 5 HOH A 212 812 93 HOH HOH . 
E 5 HOH A 213 813 180 HOH HOH . 
E 5 HOH A 214 814 208 HOH HOH . 
E 5 HOH A 215 815 162 HOH HOH . 
E 5 HOH A 216 816 159 HOH HOH . 
E 5 HOH A 217 817 187 HOH HOH . 
E 5 HOH A 218 818 133 HOH HOH . 
E 5 HOH A 219 819 207 HOH HOH . 
E 5 HOH A 220 820 173 HOH HOH . 
E 5 HOH A 221 821 168 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . B 2 6.282 49.95 67.383 1 20.15 ? FE1 SF4 501 A 1 
HETATM 2 FE FE2 SF4 . . . B 2 7.009 47.394 66.713 1 23.73 ? FE2 SF4 501 A 1 
HETATM 3 FE FE3 SF4 . . . B 2 5.395 48.823 65.118 1 21.41 ? FE3 SF4 501 A 1 
HETATM 4 FE FE4 SF4 . . . B 2 4.413 48.103 67.442 1 21.58 ? FE4 SF4 501 A 1 
HETATM 5 S S1 SF4 . . . B 2 5.073 46.627 65.789 1 20.82 ? S1 SF4 501 A 1 
HETATM 6 S S2 SF4 . . . B 2 4.223 50.208 66.538 1 23.61 ? S2 SF4 501 A 1 
HETATM 7 S S3 SF4 . . . B 2 6.218 48.149 68.795 1 24.28 ? S3 SF4 501 A 1 
HETATM 8 S S4 SF4 . . . B 2 7.507 49.283 65.553 1 23.92 ? S4 SF4 501 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#