data_6P7C # _model_server_result.job_id 5_isNoLUSF2A80P7svo47g _model_server_result.datetime_utc '2024-10-19 12:21:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6P7C # _exptl.entry_id 6P7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P7C _cell.length_a 59.94 _cell.length_b 99.913 _cell.length_c 147.545 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 6P7C _atom_sites.fract_transf_matrix[1][1] 0.016683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 501 501 SAH SAH . D 2 SAH B 1 501 501 SAH SAH . E 3 CL B 1 502 1 CL CL . F 4 HOH A 1 601 29 HOH HOH . F 4 HOH A 2 602 5 HOH HOH . F 4 HOH A 3 603 7 HOH HOH . F 4 HOH A 4 604 9 HOH HOH . F 4 HOH A 5 605 30 HOH HOH . F 4 HOH A 6 606 13 HOH HOH . F 4 HOH A 7 607 22 HOH HOH . F 4 HOH A 8 608 14 HOH HOH . F 4 HOH A 9 609 21 HOH HOH . F 4 HOH A 10 610 11 HOH HOH . F 4 HOH A 11 611 4 HOH HOH . F 4 HOH A 12 612 32 HOH HOH . F 4 HOH A 13 613 33 HOH HOH . F 4 HOH A 14 614 39 HOH HOH . F 4 HOH A 15 615 26 HOH HOH . F 4 HOH A 16 616 17 HOH HOH . F 4 HOH A 17 617 36 HOH HOH . F 4 HOH A 18 618 3 HOH HOH . F 4 HOH A 19 619 35 HOH HOH . F 4 HOH A 20 620 34 HOH HOH . F 4 HOH A 21 621 24 HOH HOH . F 4 HOH A 22 622 38 HOH HOH . F 4 HOH A 23 623 46 HOH HOH . F 4 HOH A 24 624 8 HOH HOH . F 4 HOH A 25 625 28 HOH HOH . F 4 HOH A 26 626 25 HOH HOH . F 4 HOH A 27 627 41 HOH HOH . G 4 HOH B 1 601 45 HOH HOH . G 4 HOH B 2 602 40 HOH HOH . G 4 HOH B 3 603 19 HOH HOH . G 4 HOH B 4 604 20 HOH HOH . G 4 HOH B 5 605 16 HOH HOH . G 4 HOH B 6 606 6 HOH HOH . G 4 HOH B 7 607 12 HOH HOH . G 4 HOH B 8 608 37 HOH HOH . G 4 HOH B 9 609 1 HOH HOH . G 4 HOH B 10 610 10 HOH HOH . G 4 HOH B 11 611 27 HOH HOH . G 4 HOH B 12 612 43 HOH HOH . G 4 HOH B 13 613 31 HOH HOH . G 4 HOH B 14 614 48 HOH HOH . G 4 HOH B 15 615 47 HOH HOH . G 4 HOH B 16 616 44 HOH HOH . G 4 HOH B 17 617 42 HOH HOH . G 4 HOH B 18 618 18 HOH HOH . G 4 HOH B 19 619 2 HOH HOH . G 4 HOH B 20 620 15 HOH HOH . G 4 HOH B 21 621 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 100.155 2.084 16.695 1 60.91 ? N SAH 501 A 1 HETATM 2 C CA SAH . . . C 2 98.795 1.489 16.693 1 47.58 ? CA SAH 501 A 1 HETATM 3 C CB SAH . . . C 2 97.835 2.301 15.812 1 41.73 ? CB SAH 501 A 1 HETATM 4 C CG SAH . . . C 2 97.789 3.808 16.065 1 53.16 ? CG SAH 501 A 1 HETATM 5 S SD SAH . . . C 2 97.924 4.905 14.606 1 67.27 ? SD SAH 501 A 1 HETATM 6 C C SAH . . . C 2 98.761 0.018 16.231 1 45.98 ? C SAH 501 A 1 HETATM 7 O O SAH . . . C 2 99.723 -0.733 16.379 1 48.83 ? O SAH 501 A 1 HETATM 8 O OXT SAH . . . C 2 97.77 -0.481 15.684 1 45.79 ? OXT SAH 501 A 1 HETATM 9 C C5' SAH . . . C 2 96.146 4.915 14.209 1 62.57 ? C5' SAH 501 A 1 HETATM 10 C C4' SAH . . . C 2 95.842 4.276 12.85 1 55.51 ? C4' SAH 501 A 1 HETATM 11 O O4' SAH . . . C 2 95.906 2.856 12.868 1 59.13 ? O4' SAH 501 A 1 HETATM 12 C C3' SAH . . . C 2 94.449 4.589 12.34 1 58.37 ? C3' SAH 501 A 1 HETATM 13 O O3' SAH . . . C 2 94.453 5.79 11.621 1 68.59 ? O3' SAH 501 A 1 HETATM 14 C C2' SAH . . . C 2 94.141 3.451 11.397 1 62.93 ? C2' SAH 501 A 1 HETATM 15 O O2' SAH . . . C 2 94.601 3.765 10.1 1 58.53 ? O2' SAH 501 A 1 HETATM 16 C C1' SAH . . . C 2 94.977 2.305 11.93 1 60.39 ? C1' SAH 501 A 1 HETATM 17 N N9 SAH . . . C 2 94.101 1.277 12.55 1 39.6 ? N9 SAH 501 A 1 HETATM 18 C C8 SAH . . . C 2 93.988 1.063 13.883 1 31.1 ? C8 SAH 501 A 1 HETATM 19 N N7 SAH . . . C 2 93.106 0.075 14.099 1 36.61 ? N7 SAH 501 A 1 HETATM 20 C C5 SAH . . . C 2 92.625 -0.362 12.919 1 42.56 ? C5 SAH 501 A 1 HETATM 21 C C6 SAH . . . C 2 91.698 -1.364 12.588 1 53.1 ? C6 SAH 501 A 1 HETATM 22 N N6 SAH . . . C 2 91.095 -2.107 13.531 1 44.97 ? N6 SAH 501 A 1 HETATM 23 N N1 SAH . . . C 2 91.401 -1.59 11.259 1 52.38 ? N1 SAH 501 A 1 HETATM 24 C C2 SAH . . . C 2 92.02 -0.818 10.294 1 44.71 ? C2 SAH 501 A 1 HETATM 25 N N3 SAH . . . C 2 92.93 0.159 10.634 1 39.62 ? N3 SAH 501 A 1 HETATM 26 C C4 SAH . . . C 2 93.243 0.389 11.931 1 39.28 ? C4 SAH 501 A 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #