data_6P8C # _model_server_result.job_id NL2O6RtMAgUQ1x02TLjWZQ _model_server_result.datetime_utc '2024-10-19 08:40:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 6P8C # _exptl.entry_id 6P8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P8C _cell.length_a 56.921 _cell.length_b 89.597 _cell.length_c 107.013 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 209 A ARG 176 1_555 H MG MG . A MG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc2 H MG MG . A MG 306 1_555 L O HOH . A HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc3 H MG MG . A MG 306 1_555 L O HOH . A HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc4 H MG MG . A MG 306 1_555 B O ARG 209 B ARG 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc5 H MG MG . A MG 306 1_555 M O HOH . B HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 H MG MG . A MG 306 1_555 M O HOH . B HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6P8C _atom_sites.fract_transf_matrix[1][1] 0.017568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 301 1 CL CL . D 3 GOL A 1 302 1 GOL GOL . E 3 GOL A 1 303 2 GOL GOL . F 3 GOL A 1 304 3 GOL GOL . G 3 GOL A 1 305 4 GOL GOL . H 4 MG A 1 306 1 MG MG . I 5 NAP A 1 307 220 NAP NAP . J 2 CL B 1 301 2 CL CL . K 5 NAP B 1 302 220 NAP NAP . L 6 HOH A 1 401 170 HOH HOH . L 6 HOH A 2 402 254 HOH HOH . L 6 HOH A 3 403 261 HOH HOH . L 6 HOH A 4 404 73 HOH HOH . L 6 HOH A 5 405 163 HOH HOH . L 6 HOH A 6 406 40 HOH HOH . L 6 HOH A 7 407 211 HOH HOH . L 6 HOH A 8 408 236 HOH HOH . L 6 HOH A 9 409 120 HOH HOH . L 6 HOH A 10 410 138 HOH HOH . L 6 HOH A 11 411 117 HOH HOH . L 6 HOH A 12 412 185 HOH HOH . L 6 HOH A 13 413 3 HOH HOH . L 6 HOH A 14 414 14 HOH HOH . L 6 HOH A 15 415 264 HOH HOH . L 6 HOH A 16 416 122 HOH HOH . L 6 HOH A 17 417 85 HOH HOH . L 6 HOH A 18 418 19 HOH HOH . L 6 HOH A 19 419 65 HOH HOH . L 6 HOH A 20 420 29 HOH HOH . L 6 HOH A 21 421 181 HOH HOH . L 6 HOH A 22 422 30 HOH HOH . L 6 HOH A 23 423 22 HOH HOH . L 6 HOH A 24 424 13 HOH HOH . L 6 HOH A 25 425 18 HOH HOH . L 6 HOH A 26 426 55 HOH HOH . L 6 HOH A 27 427 20 HOH HOH . L 6 HOH A 28 428 132 HOH HOH . L 6 HOH A 29 429 1 HOH HOH . L 6 HOH A 30 430 208 HOH HOH . L 6 HOH A 31 431 171 HOH HOH . L 6 HOH A 32 432 95 HOH HOH . L 6 HOH A 33 433 106 HOH HOH . L 6 HOH A 34 434 197 HOH HOH . L 6 HOH A 35 435 9 HOH HOH . L 6 HOH A 36 436 12 HOH HOH . L 6 HOH A 37 437 123 HOH HOH . L 6 HOH A 38 438 149 HOH HOH . L 6 HOH A 39 439 57 HOH HOH . L 6 HOH A 40 440 39 HOH HOH . L 6 HOH A 41 441 180 HOH HOH . L 6 HOH A 42 442 257 HOH HOH . L 6 HOH A 43 443 188 HOH HOH . L 6 HOH A 44 444 16 HOH HOH . L 6 HOH A 45 445 23 HOH HOH . L 6 HOH A 46 446 234 HOH HOH . L 6 HOH A 47 447 206 HOH HOH . L 6 HOH A 48 448 44 HOH HOH . L 6 HOH A 49 449 71 HOH HOH . L 6 HOH A 50 450 258 HOH HOH . L 6 HOH A 51 451 63 HOH HOH . L 6 HOH A 52 452 267 HOH HOH . L 6 HOH A 53 453 235 HOH HOH . L 6 HOH A 54 454 125 HOH HOH . L 6 HOH A 55 455 93 HOH HOH . L 6 HOH A 56 456 232 HOH HOH . L 6 HOH A 57 457 128 HOH HOH . L 6 HOH A 58 458 248 HOH HOH . L 6 HOH A 59 459 157 HOH HOH . L 6 HOH A 60 460 225 HOH HOH . L 6 HOH A 61 461 21 HOH HOH . L 6 HOH A 62 462 17 HOH HOH . L 6 HOH A 63 463 35 HOH HOH . L 6 HOH A 64 464 203 HOH HOH . L 6 HOH A 65 465 217 HOH HOH . L 6 HOH A 66 466 86 HOH HOH . L 6 HOH A 67 467 27 HOH HOH . L 6 HOH A 68 468 31 HOH HOH . L 6 HOH A 69 469 6 HOH HOH . L 6 HOH A 70 470 145 HOH HOH . L 6 HOH A 71 471 118 HOH HOH . L 6 HOH A 72 472 37 HOH HOH . L 6 HOH A 73 473 82 HOH HOH . L 6 HOH A 74 474 109 HOH HOH . L 6 HOH A 75 475 62 HOH HOH . L 6 HOH A 76 476 228 HOH HOH . L 6 HOH A 77 477 165 HOH HOH . L 6 HOH A 78 478 54 HOH HOH . L 6 HOH A 79 479 24 HOH HOH . L 6 HOH A 80 480 96 HOH HOH . L 6 HOH A 81 481 67 HOH HOH . L 6 HOH A 82 482 194 HOH HOH . L 6 HOH A 83 483 50 HOH HOH . L 6 HOH A 84 484 89 HOH HOH . L 6 HOH A 85 485 152 HOH HOH . L 6 HOH A 86 486 241 HOH HOH . L 6 HOH A 87 487 184 HOH HOH . L 6 HOH A 88 488 179 HOH HOH . L 6 HOH A 89 489 66 HOH HOH . L 6 HOH A 90 490 177 HOH HOH . L 6 HOH A 91 491 166 HOH HOH . L 6 HOH A 92 492 108 HOH HOH . L 6 HOH A 93 493 94 HOH HOH . L 6 HOH A 94 494 136 HOH HOH . L 6 HOH A 95 495 250 HOH HOH . L 6 HOH A 96 496 51 HOH HOH . L 6 HOH A 97 497 11 HOH HOH . L 6 HOH A 98 498 218 HOH HOH . L 6 HOH A 99 499 64 HOH HOH . L 6 HOH A 100 500 91 HOH HOH . L 6 HOH A 101 501 196 HOH HOH . L 6 HOH A 102 502 107 HOH HOH . L 6 HOH A 103 503 28 HOH HOH . L 6 HOH A 104 504 178 HOH HOH . L 6 HOH A 105 505 252 HOH HOH . L 6 HOH A 106 506 72 HOH HOH . L 6 HOH A 107 507 168 HOH HOH . L 6 HOH A 108 508 32 HOH HOH . L 6 HOH A 109 509 68 HOH HOH . L 6 HOH A 110 510 83 HOH HOH . L 6 HOH A 111 511 192 HOH HOH . L 6 HOH A 112 512 164 HOH HOH . L 6 HOH A 113 513 190 HOH HOH . L 6 HOH A 114 514 253 HOH HOH . L 6 HOH A 115 515 238 HOH HOH . L 6 HOH A 116 516 224 HOH HOH . L 6 HOH A 117 517 233 HOH HOH . L 6 HOH A 118 518 263 HOH HOH . L 6 HOH A 119 519 193 HOH HOH . L 6 HOH A 120 520 255 HOH HOH . L 6 HOH A 121 521 141 HOH HOH . L 6 HOH A 122 522 209 HOH HOH . L 6 HOH A 123 523 156 HOH HOH . L 6 HOH A 124 524 226 HOH HOH . L 6 HOH A 125 525 256 HOH HOH . L 6 HOH A 126 526 147 HOH HOH . L 6 HOH A 127 527 207 HOH HOH . L 6 HOH A 128 528 202 HOH HOH . L 6 HOH A 129 529 151 HOH HOH . L 6 HOH A 130 530 200 HOH HOH . L 6 HOH A 131 531 176 HOH HOH . L 6 HOH A 132 532 34 HOH HOH . L 6 HOH A 133 533 230 HOH HOH . L 6 HOH A 134 534 124 HOH HOH . L 6 HOH A 135 535 268 HOH HOH . L 6 HOH A 136 536 97 HOH HOH . L 6 HOH A 137 537 77 HOH HOH . L 6 HOH A 138 538 33 HOH HOH . L 6 HOH A 139 539 251 HOH HOH . L 6 HOH A 140 540 148 HOH HOH . L 6 HOH A 141 541 74 HOH HOH . L 6 HOH A 142 542 69 HOH HOH . L 6 HOH A 143 543 271 HOH HOH . L 6 HOH A 144 544 239 HOH HOH . L 6 HOH A 145 545 150 HOH HOH . L 6 HOH A 146 546 262 HOH HOH . L 6 HOH A 147 547 272 HOH HOH . L 6 HOH A 148 548 201 HOH HOH . L 6 HOH A 149 549 186 HOH HOH . L 6 HOH A 150 550 143 HOH HOH . L 6 HOH A 151 551 240 HOH HOH . L 6 HOH A 152 552 242 HOH HOH . L 6 HOH A 153 553 167 HOH HOH . M 6 HOH B 1 401 214 HOH HOH . M 6 HOH B 2 402 79 HOH HOH . M 6 HOH B 3 403 210 HOH HOH . M 6 HOH B 4 404 60 HOH HOH . M 6 HOH B 5 405 198 HOH HOH . M 6 HOH B 6 406 75 HOH HOH . M 6 HOH B 7 407 173 HOH HOH . M 6 HOH B 8 408 10 HOH HOH . M 6 HOH B 9 409 5 HOH HOH . M 6 HOH B 10 410 4 HOH HOH . M 6 HOH B 11 411 182 HOH HOH . M 6 HOH B 12 412 126 HOH HOH . M 6 HOH B 13 413 215 HOH HOH . M 6 HOH B 14 414 205 HOH HOH . M 6 HOH B 15 415 88 HOH HOH . M 6 HOH B 16 416 223 HOH HOH . M 6 HOH B 17 417 15 HOH HOH . M 6 HOH B 18 418 189 HOH HOH . M 6 HOH B 19 419 187 HOH HOH . M 6 HOH B 20 420 49 HOH HOH . M 6 HOH B 21 421 259 HOH HOH . M 6 HOH B 22 422 199 HOH HOH . M 6 HOH B 23 423 41 HOH HOH . M 6 HOH B 24 424 266 HOH HOH . M 6 HOH B 25 425 115 HOH HOH . M 6 HOH B 26 426 76 HOH HOH . M 6 HOH B 27 427 212 HOH HOH . M 6 HOH B 28 428 153 HOH HOH . M 6 HOH B 29 429 48 HOH HOH . M 6 HOH B 30 430 26 HOH HOH . M 6 HOH B 31 431 101 HOH HOH . M 6 HOH B 32 432 38 HOH HOH . M 6 HOH B 33 433 204 HOH HOH . M 6 HOH B 34 434 47 HOH HOH . M 6 HOH B 35 435 269 HOH HOH . M 6 HOH B 36 436 2 HOH HOH . M 6 HOH B 37 437 119 HOH HOH . M 6 HOH B 38 438 92 HOH HOH . M 6 HOH B 39 439 172 HOH HOH . M 6 HOH B 40 440 183 HOH HOH . M 6 HOH B 41 441 243 HOH HOH . M 6 HOH B 42 442 114 HOH HOH . M 6 HOH B 43 443 110 HOH HOH . M 6 HOH B 44 444 52 HOH HOH . M 6 HOH B 45 445 100 HOH HOH . M 6 HOH B 46 446 102 HOH HOH . M 6 HOH B 47 447 58 HOH HOH . M 6 HOH B 48 448 36 HOH HOH . M 6 HOH B 49 449 61 HOH HOH . M 6 HOH B 50 450 130 HOH HOH . M 6 HOH B 51 451 162 HOH HOH . M 6 HOH B 52 452 137 HOH HOH . M 6 HOH B 53 453 7 HOH HOH . M 6 HOH B 54 454 45 HOH HOH . M 6 HOH B 55 455 195 HOH HOH . M 6 HOH B 56 456 116 HOH HOH . M 6 HOH B 57 457 105 HOH HOH . M 6 HOH B 58 458 87 HOH HOH . M 6 HOH B 59 459 121 HOH HOH . M 6 HOH B 60 460 220 HOH HOH . M 6 HOH B 61 461 25 HOH HOH . M 6 HOH B 62 462 113 HOH HOH . M 6 HOH B 63 463 219 HOH HOH . M 6 HOH B 64 464 135 HOH HOH . M 6 HOH B 65 465 43 HOH HOH . M 6 HOH B 66 466 80 HOH HOH . M 6 HOH B 67 467 129 HOH HOH . M 6 HOH B 68 468 154 HOH HOH . M 6 HOH B 69 469 222 HOH HOH . M 6 HOH B 70 470 231 HOH HOH . M 6 HOH B 71 471 46 HOH HOH . M 6 HOH B 72 472 99 HOH HOH . M 6 HOH B 73 473 56 HOH HOH . M 6 HOH B 74 474 8 HOH HOH . M 6 HOH B 75 475 159 HOH HOH . M 6 HOH B 76 476 112 HOH HOH . M 6 HOH B 77 477 229 HOH HOH . M 6 HOH B 78 478 78 HOH HOH . M 6 HOH B 79 479 174 HOH HOH . M 6 HOH B 80 480 131 HOH HOH . M 6 HOH B 81 481 42 HOH HOH . M 6 HOH B 82 482 103 HOH HOH . M 6 HOH B 83 483 90 HOH HOH . M 6 HOH B 84 484 247 HOH HOH . M 6 HOH B 85 485 70 HOH HOH . M 6 HOH B 86 486 246 HOH HOH . M 6 HOH B 87 487 98 HOH HOH . M 6 HOH B 88 488 127 HOH HOH . M 6 HOH B 89 489 160 HOH HOH . M 6 HOH B 90 490 221 HOH HOH . M 6 HOH B 91 491 237 HOH HOH . M 6 HOH B 92 492 81 HOH HOH . M 6 HOH B 93 493 216 HOH HOH . M 6 HOH B 94 494 59 HOH HOH . M 6 HOH B 95 495 134 HOH HOH . M 6 HOH B 96 496 260 HOH HOH . M 6 HOH B 97 497 227 HOH HOH . M 6 HOH B 98 498 161 HOH HOH . M 6 HOH B 99 499 158 HOH HOH . M 6 HOH B 100 500 139 HOH HOH . M 6 HOH B 101 501 144 HOH HOH . M 6 HOH B 102 502 53 HOH HOH . M 6 HOH B 103 503 213 HOH HOH . M 6 HOH B 104 504 244 HOH HOH . M 6 HOH B 105 505 270 HOH HOH . M 6 HOH B 106 506 84 HOH HOH . M 6 HOH B 107 507 273 HOH HOH . M 6 HOH B 108 508 191 HOH HOH . M 6 HOH B 109 509 265 HOH HOH . M 6 HOH B 110 510 245 HOH HOH . M 6 HOH B 111 511 169 HOH HOH . M 6 HOH B 112 512 140 HOH HOH . M 6 HOH B 113 513 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -7.503 26.762 103.452 0.8 54.67 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . E 3 -6.532 27.433 104.25 0.8 53.39 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . E 3 -6.854 25.928 102.367 0.8 64.62 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . E 3 -7.855 25.298 101.568 0.8 74.28 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . E 3 -5.907 26.712 101.484 0.8 60.85 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . E 3 -6.576 27.785 100.827 0.8 64.09 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #