data_6P8M # _model_server_result.job_id wohFeHP2GM28tshHq1vdYQ _model_server_result.datetime_utc '2025-04-10 17:49:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1405}' # _entry.id 6P8M # _exptl.entry_id 6P8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P8M _cell.length_a 146.796 _cell.length_b 176.755 _cell.length_c 108.573 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG C 606 NAG 4 n D NAG 2 A 2 NAG C 607 NAG 4 n D BMA 3 A 3 BMA C 608 BMA 4 n D MAN 4 A 4 MAN C 609 MAN 4 n D MAN 5 A 5 MAN C 610 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 C CYS 54 1_555 A SG CYS 31 C CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 22 C CYS 65 1_555 A SG CYS 72 C CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 76 C CYS 119 1_555 A SG CYS 89 C CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 102 C CYS 218 1_555 A SG CYS 131 C CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 112 C CYS 228 1_555 A SG CYS 123 C CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 180 C CYS 296 1_555 A SG CYS 199 C CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 245 C CYS 378 1_555 A SG CYS 298 C CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 252 C CYS 385 1_555 A SG CYS 271 C CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 A SG CYS 312 C CYS 459 1_555 B SG CYS 61 H CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 B SG CYS 148 H CYS 140 1_555 B SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf12 C SG CYS 23 L CYS 23 1_555 C SG CYS 94 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 C SG CYS 136 L CYS 134 1_555 C SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 81 C ASN 124 1_555 P C1 NAG . C NAG 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 114 C ASN 230 1_555 Q C1 NAG . C NAG 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 A ND2 ASN 125 C ASN 241 1_555 R C1 NAG . C NAG 1419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 A ND2 ASN 146 C ASN 262 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale5 A ND2 ASN 173 C ASN 289 1_555 S C1 NAG . C NAG 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 A ND2 ASN 205 C ASN 338 1_555 T C1 NAG . C NAG 1421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale7 A ND2 ASN 225 C ASN 358 1_555 U C1 NAG . C NAG 1422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 A ND2 ASN 253 C ASN 386 1_555 V C1 NAG . C NAG 1423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 A ND2 ASN 259 C ASN 392 1_555 W C1 NAG . C NAG 1424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale10 A ND2 ASN 264 C ASN 397 1_555 E C1 NAG . C NAG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale11 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 D O4 NAG . A NAG 2 1_555 D C1 BMA . A BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale13 D O3 BMA . A BMA 3 1_555 D C1 MAN . A MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale14 D O6 BMA . A BMA 3 1_555 D C1 MAN . A MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 107 n n C1 C2 EDO sing 108 n n C1 H11 EDO sing 109 n n C1 H12 EDO sing 110 n n O1 HO1 EDO sing 111 n n C2 O2 EDO sing 112 n n C2 H21 EDO sing 113 n n C2 H22 EDO sing 114 n n O2 HO2 EDO sing 115 n n # _atom_sites.entry_id 6P8M _atom_sites.fract_transf_matrix[1][1] 0.006812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG C 1 1401 1397 NAG NAG . F 6 NH4 C 1 1402 4 NH4 NH4 . G 6 NH4 C 1 1403 6 NH4 NH4 . H 6 NH4 C 1 1404 7 NH4 NH4 . I 7 EDO C 1 1405 1 EDO EDO . J 7 EDO C 1 1406 2 EDO EDO . K 8 PEG C 1 1407 2 PEG PEG . L 9 NA C 1 1408 1 NA NA . M 9 NA C 1 1409 3 NA NA . N 9 NA C 1 1410 4 NA NA . O 10 CL C 1 1411 1 CL CL . P 5 NAG C 1 1417 1124 NAG NAG . Q 5 NAG C 1 1418 1230 NAG NAG . R 5 NAG C 1 1419 1241 NAG NAG . S 5 NAG C 1 1420 1289 NAG NAG . T 5 NAG C 1 1421 1338 NAG NAG . U 5 NAG C 1 1422 1358 NAG NAG . V 5 NAG C 1 1423 1386 NAG NAG . W 5 NAG C 1 1424 1392 NAG NAG . X 8 PEG H 1 301 1 PEG PEG . Y 9 NA H 1 302 2 NA NA . Z 6 NH4 L 1 301 1 NH4 NH4 . AA 11 HOH C 1 1501 13 HOH HOH . AA 11 HOH C 2 1502 15 HOH HOH . AA 11 HOH C 3 1503 11 HOH HOH . AA 11 HOH C 4 1504 12 HOH HOH . AA 11 HOH C 5 1505 9 HOH HOH . AA 11 HOH C 6 1506 14 HOH HOH . AA 11 HOH C 7 1507 10 HOH HOH . BA 11 HOH L 1 401 6 HOH HOH . BA 11 HOH L 2 402 2 HOH HOH . BA 11 HOH L 3 403 1 HOH HOH . BA 11 HOH L 4 404 8 HOH HOH . BA 11 HOH L 5 405 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 7 42.81 14.602 6.586 1 75.9 ? C1 EDO 1405 C 1 HETATM 2 O O1 EDO . . . I 7 43.742 13.52 6.463 1 57.96 ? O1 EDO 1405 C 1 HETATM 3 C C2 EDO . . . I 7 43.108 15.665 5.534 1 69.82 ? C2 EDO 1405 C 1 HETATM 4 O O2 EDO . . . I 7 44.392 16.25 5.784 1 64.22 ? O2 EDO 1405 C 1 HETATM 5 H H11 EDO . . . I 7 41.792 14.229 6.457 1 91.3 ? H11 EDO 1405 C 1 HETATM 6 H H12 EDO . . . I 7 42.883 15.04 7.584 1 91.3 ? H12 EDO 1405 C 1 HETATM 7 H HO1 EDO . . . I 7 43.564 12.862 7.149 1 69.76 ? HO1 EDO 1405 C 1 HETATM 8 H H21 EDO . . . I 7 43.095 15.214 4.54 1 83.99 ? H21 EDO 1405 C 1 HETATM 9 H H22 EDO . . . I 7 42.338 16.438 5.562 1 83.99 ? H22 EDO 1405 C 1 HETATM 10 H HO2 EDO . . . I 7 44.57 16.931 5.12 1 77.27 ? HO2 EDO 1405 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #