data_6P8O
#
_model_server_result.job_id            swNn1S5xjmsbHZTNTwYmaQ 
_model_server_result.datetime_utc      '2024-10-10 17:14:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6P8O 
#
_exptl.entry_id    6P8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.57 
_cell.angle_gamma         90 
_cell.entry_id            6P8O 
_cell.length_a            65.421 
_cell.length_b            30.585 
_cell.length_c            74.911 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P8O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 49 A ILE 49 1_555 A N MLY 50 A MLY 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale2 A C MLY 50 A MLY 50 1_555 A N THR 51 A THR 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C THR 121 A THR 121 1_555 A N MLY 122 A MLY 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 A C MLY 122 A MLY 122 1_555 A N PRO 123 A PRO 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A NE2 HIS 11 A HIS 11 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc2 C NI NI . A NI 201 1_555 E O HOH . A HOH 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc3 C NI NI . A NI 201 1_555 E O HOH . A HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc4 C NI NI . A NI 201 1_555 E O HOH . A HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc5 C NI NI . A NI 201 1_545 B NE2 HIS 11 B HIS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc6 C NI NI . A NI 201 1_555 F O HOH . B HOH 245 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6P8O 
_atom_sites.fract_transf_matrix[1][1]    0.015286 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003128 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.032696 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013626 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NI A 1 201 1 NI NI . 
D 4 CL A 1 202 1 CL CL . 
E 5 HOH A 1 301 151 HOH HOH . 
E 5 HOH A 2 302 196 HOH HOH . 
E 5 HOH A 3 303 161 HOH HOH . 
E 5 HOH A 4 304 159 HOH HOH . 
E 5 HOH A 5 305 74 HOH HOH . 
E 5 HOH A 6 306 75 HOH HOH . 
E 5 HOH A 7 307 132 HOH HOH . 
E 5 HOH A 8 308 51 HOH HOH . 
E 5 HOH A 9 309 17 HOH HOH . 
E 5 HOH A 10 310 18 HOH HOH . 
E 5 HOH A 11 311 206 HOH HOH . 
E 5 HOH A 12 312 156 HOH HOH . 
E 5 HOH A 13 313 130 HOH HOH . 
E 5 HOH A 14 314 104 HOH HOH . 
E 5 HOH A 15 315 42 HOH HOH . 
E 5 HOH A 16 316 53 HOH HOH . 
E 5 HOH A 17 317 93 HOH HOH . 
E 5 HOH A 18 318 3 HOH HOH . 
E 5 HOH A 19 319 90 HOH HOH . 
E 5 HOH A 20 320 76 HOH HOH . 
E 5 HOH A 21 321 31 HOH HOH . 
E 5 HOH A 22 322 56 HOH HOH . 
E 5 HOH A 23 323 100 HOH HOH . 
E 5 HOH A 24 324 50 HOH HOH . 
E 5 HOH A 25 325 36 HOH HOH . 
E 5 HOH A 26 326 22 HOH HOH . 
E 5 HOH A 27 327 65 HOH HOH . 
E 5 HOH A 28 328 72 HOH HOH . 
E 5 HOH A 29 329 10 HOH HOH . 
E 5 HOH A 30 330 114 HOH HOH . 
E 5 HOH A 31 331 7 HOH HOH . 
E 5 HOH A 32 332 124 HOH HOH . 
E 5 HOH A 33 333 174 HOH HOH . 
E 5 HOH A 34 334 16 HOH HOH . 
E 5 HOH A 35 335 29 HOH HOH . 
E 5 HOH A 36 336 144 HOH HOH . 
E 5 HOH A 37 337 86 HOH HOH . 
E 5 HOH A 38 338 35 HOH HOH . 
E 5 HOH A 39 339 122 HOH HOH . 
E 5 HOH A 40 340 38 HOH HOH . 
E 5 HOH A 41 341 4 HOH HOH . 
E 5 HOH A 42 342 41 HOH HOH . 
E 5 HOH A 43 343 21 HOH HOH . 
E 5 HOH A 44 344 37 HOH HOH . 
E 5 HOH A 45 345 54 HOH HOH . 
E 5 HOH A 46 346 110 HOH HOH . 
E 5 HOH A 47 347 55 HOH HOH . 
E 5 HOH A 48 348 44 HOH HOH . 
E 5 HOH A 49 349 192 HOH HOH . 
E 5 HOH A 50 350 83 HOH HOH . 
E 5 HOH A 51 351 115 HOH HOH . 
E 5 HOH A 52 352 67 HOH HOH . 
E 5 HOH A 53 353 9 HOH HOH . 
E 5 HOH A 54 354 45 HOH HOH . 
E 5 HOH A 55 355 28 HOH HOH . 
E 5 HOH A 56 356 27 HOH HOH . 
E 5 HOH A 57 357 99 HOH HOH . 
E 5 HOH A 58 358 133 HOH HOH . 
E 5 HOH A 59 359 138 HOH HOH . 
E 5 HOH A 60 360 33 HOH HOH . 
E 5 HOH A 61 361 15 HOH HOH . 
E 5 HOH A 62 362 60 HOH HOH . 
E 5 HOH A 63 363 109 HOH HOH . 
E 5 HOH A 64 364 19 HOH HOH . 
E 5 HOH A 65 365 200 HOH HOH . 
E 5 HOH A 66 366 191 HOH HOH . 
E 5 HOH A 67 367 64 HOH HOH . 
E 5 HOH A 68 368 5 HOH HOH . 
E 5 HOH A 69 369 189 HOH HOH . 
E 5 HOH A 70 370 39 HOH HOH . 
E 5 HOH A 71 371 6 HOH HOH . 
E 5 HOH A 72 372 126 HOH HOH . 
E 5 HOH A 73 373 137 HOH HOH . 
E 5 HOH A 74 374 140 HOH HOH . 
E 5 HOH A 75 375 88 HOH HOH . 
E 5 HOH A 76 376 105 HOH HOH . 
E 5 HOH A 77 377 146 HOH HOH . 
E 5 HOH A 78 378 175 HOH HOH . 
E 5 HOH A 79 379 142 HOH HOH . 
E 5 HOH A 80 380 209 HOH HOH . 
E 5 HOH A 81 381 136 HOH HOH . 
E 5 HOH A 82 382 26 HOH HOH . 
E 5 HOH A 83 383 205 HOH HOH . 
E 5 HOH A 84 384 135 HOH HOH . 
E 5 HOH A 85 385 14 HOH HOH . 
E 5 HOH A 86 386 34 HOH HOH . 
E 5 HOH A 87 387 84 HOH HOH . 
E 5 HOH A 88 388 160 HOH HOH . 
E 5 HOH A 89 389 178 HOH HOH . 
E 5 HOH A 90 390 158 HOH HOH . 
E 5 HOH A 91 391 68 HOH HOH . 
E 5 HOH A 92 392 193 HOH HOH . 
E 5 HOH A 93 393 2 HOH HOH . 
E 5 HOH A 94 394 148 HOH HOH . 
E 5 HOH A 95 395 145 HOH HOH . 
E 5 HOH A 96 396 97 HOH HOH . 
E 5 HOH A 97 397 106 HOH HOH . 
E 5 HOH A 98 398 169 HOH HOH . 
E 5 HOH A 99 399 162 HOH HOH . 
E 5 HOH A 100 400 77 HOH HOH . 
E 5 HOH A 101 401 98 HOH HOH . 
E 5 HOH A 102 402 85 HOH HOH . 
E 5 HOH A 103 403 113 HOH HOH . 
E 5 HOH A 104 404 183 HOH HOH . 
E 5 HOH A 105 405 25 HOH HOH . 
E 5 HOH A 106 406 101 HOH HOH . 
E 5 HOH A 107 407 166 HOH HOH . 
E 5 HOH A 108 408 59 HOH HOH . 
E 5 HOH A 109 409 149 HOH HOH . 
E 5 HOH A 110 410 190 HOH HOH . 
E 5 HOH A 111 411 170 HOH HOH . 
E 5 HOH A 112 412 102 HOH HOH . 
E 5 HOH A 113 413 154 HOH HOH . 
E 5 HOH A 114 414 40 HOH HOH . 
E 5 HOH A 115 415 194 HOH HOH . 
E 5 HOH A 116 416 134 HOH HOH . 
E 5 HOH A 117 417 204 HOH HOH . 
E 5 HOH A 118 418 71 HOH HOH . 
E 5 HOH A 119 419 91 HOH HOH . 
E 5 HOH A 120 420 121 HOH HOH . 
E 5 HOH A 121 421 57 HOH HOH . 
E 5 HOH A 122 422 125 HOH HOH . 
E 5 HOH A 123 423 69 HOH HOH . 
E 5 HOH A 124 424 103 HOH HOH . 
E 5 HOH A 125 425 208 HOH HOH . 
E 5 HOH A 126 426 143 HOH HOH . 
E 5 HOH A 127 427 52 HOH HOH . 
F 5 HOH B 1 201 111 HOH HOH . 
F 5 HOH B 2 202 171 HOH HOH . 
F 5 HOH B 3 203 198 HOH HOH . 
F 5 HOH B 4 204 168 HOH HOH . 
F 5 HOH B 5 205 81 HOH HOH . 
F 5 HOH B 6 206 127 HOH HOH . 
F 5 HOH B 7 207 73 HOH HOH . 
F 5 HOH B 8 208 80 HOH HOH . 
F 5 HOH B 9 209 176 HOH HOH . 
F 5 HOH B 10 210 129 HOH HOH . 
F 5 HOH B 11 211 177 HOH HOH . 
F 5 HOH B 12 212 58 HOH HOH . 
F 5 HOH B 13 213 12 HOH HOH . 
F 5 HOH B 14 214 8 HOH HOH . 
F 5 HOH B 15 215 32 HOH HOH . 
F 5 HOH B 16 216 23 HOH HOH . 
F 5 HOH B 17 217 30 HOH HOH . 
F 5 HOH B 18 218 96 HOH HOH . 
F 5 HOH B 19 219 66 HOH HOH . 
F 5 HOH B 20 220 78 HOH HOH . 
F 5 HOH B 21 221 112 HOH HOH . 
F 5 HOH B 22 222 11 HOH HOH . 
F 5 HOH B 23 223 95 HOH HOH . 
F 5 HOH B 24 224 43 HOH HOH . 
F 5 HOH B 25 225 92 HOH HOH . 
F 5 HOH B 26 226 94 HOH HOH . 
F 5 HOH B 27 227 62 HOH HOH . 
F 5 HOH B 28 228 116 HOH HOH . 
F 5 HOH B 29 229 150 HOH HOH . 
F 5 HOH B 30 230 89 HOH HOH . 
F 5 HOH B 31 231 47 HOH HOH . 
F 5 HOH B 32 232 1 HOH HOH . 
F 5 HOH B 33 233 48 HOH HOH . 
F 5 HOH B 34 234 187 HOH HOH . 
F 5 HOH B 35 235 186 HOH HOH . 
F 5 HOH B 36 236 70 HOH HOH . 
F 5 HOH B 37 237 63 HOH HOH . 
F 5 HOH B 38 238 155 HOH HOH . 
F 5 HOH B 39 239 167 HOH HOH . 
F 5 HOH B 40 240 13 HOH HOH . 
F 5 HOH B 41 241 131 HOH HOH . 
F 5 HOH B 42 242 87 HOH HOH . 
F 5 HOH B 43 243 61 HOH HOH . 
F 5 HOH B 44 244 46 HOH HOH . 
F 5 HOH B 45 245 180 HOH HOH . 
F 5 HOH B 46 246 107 HOH HOH . 
F 5 HOH B 47 247 164 HOH HOH . 
F 5 HOH B 48 248 20 HOH HOH . 
F 5 HOH B 49 249 82 HOH HOH . 
F 5 HOH B 50 250 119 HOH HOH . 
F 5 HOH B 51 251 173 HOH HOH . 
F 5 HOH B 52 252 197 HOH HOH . 
F 5 HOH B 53 253 147 HOH HOH . 
F 5 HOH B 54 254 202 HOH HOH . 
F 5 HOH B 55 255 182 HOH HOH . 
F 5 HOH B 56 256 117 HOH HOH . 
F 5 HOH B 57 257 79 HOH HOH . 
F 5 HOH B 58 258 153 HOH HOH . 
F 5 HOH B 59 259 157 HOH HOH . 
F 5 HOH B 60 260 152 HOH HOH . 
F 5 HOH B 61 261 139 HOH HOH . 
F 5 HOH B 62 262 128 HOH HOH . 
F 5 HOH B 63 263 172 HOH HOH . 
F 5 HOH B 64 264 163 HOH HOH . 
F 5 HOH B 65 265 123 HOH HOH . 
F 5 HOH B 66 266 49 HOH HOH . 
F 5 HOH B 67 267 118 HOH HOH . 
F 5 HOH B 68 268 181 HOH HOH . 
F 5 HOH B 69 269 120 HOH HOH . 
F 5 HOH B 70 270 201 HOH HOH . 
F 5 HOH B 71 271 165 HOH HOH . 
F 5 HOH B 72 272 108 HOH HOH . 
F 5 HOH B 73 273 179 HOH HOH . 
F 5 HOH B 74 274 141 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -15.944 
_atom_site.Cartn_y               16.503 
_atom_site.Cartn_z               15.364 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        30.3 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#