data_6P8T # _model_server_result.job_id GRMBXliDZBBS1RYrKjglDA _model_server_result.datetime_utc '2024-11-09 02:35:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 6P8T # _exptl.entry_id 6P8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-benzyl-2-(cyclohex-1-en-1-yl)ethan-1-amine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.113 _cell.angle_gamma 90 _cell.entry_id 6P8T _cell.length_a 92.266 _cell.length_b 172.467 _cell.length_c 191.891 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L 1 1 E,F,G,H,M,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 463 A GLU 463 1_555 I MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc2 I MG MG . A MG 801 1_555 C OE2 GLU 255 C GLU 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 B OE2 GLU 463 B GLU 463 1_555 J MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 J MG MG . B MG 801 1_555 D OE1 GLU 255 D GLU 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 E OE1 GLU 463 E GLU 463 1_555 M MG MG . E MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc6 M MG MG . E MG 801 1_555 P O HOH . E HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc7 M MG MG . E MG 801 1_555 P O HOH . E HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc8 M MG MG . E MG 801 1_555 G OE1 GLU 255 G GLU 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? # _chem_comp.formula 'C15 H21 N' _chem_comp.formula_weight 215.334 _chem_comp.id NO4 _chem_comp.mon_nstd_flag . _chem_comp.name N-benzyl-2-(cyclohex-1-en-1-yl)ethan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C09 NO4 doub 237 n y C10 C11 NO4 sing 238 n y C09 C08 NO4 sing 239 n y C11 C12 NO4 doub 240 n y C08 C07 NO4 doub 241 n y C12 C07 NO4 sing 242 n y C07 C06 NO4 sing 243 n n C04 C03 NO4 sing 244 n n C04 N05 NO4 sing 245 n n C06 N05 NO4 sing 246 n n C03 C02 NO4 sing 247 n n C01 C02 NO4 doub 248 n n C01 C16 NO4 sing 249 n n C02 C13 NO4 sing 250 n n C16 C15 NO4 sing 251 n n C13 C14 NO4 sing 252 n n C15 C14 NO4 sing 253 n n C10 H101 NO4 sing 254 n n C12 H121 NO4 sing 255 n n C13 H131 NO4 sing 256 n n C13 H132 NO4 sing 257 n n C16 H161 NO4 sing 258 n n C16 H162 NO4 sing 259 n n C01 H011 NO4 sing 260 n n C03 H032 NO4 sing 261 n n C03 H031 NO4 sing 262 n n C04 H041 NO4 sing 263 n n C04 H042 NO4 sing 264 n n C06 H062 NO4 sing 265 n n C06 H061 NO4 sing 266 n n C08 H081 NO4 sing 267 n n C09 H091 NO4 sing 268 n n C11 H111 NO4 sing 269 n n C14 H141 NO4 sing 270 n n C14 H142 NO4 sing 271 n n C15 H151 NO4 sing 272 n n C15 H152 NO4 sing 273 n n N05 H051 NO4 sing 274 n n # _atom_sites.entry_id 6P8T _atom_sites.fract_transf_matrix[1][1] 0.010838 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002525 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MG A 1 801 2 MG MG . J 3 MG B 1 801 4 MG MG . K 4 NO4 C 1 401 1 NO4 VB2 . L 4 NO4 D 1 401 3 NO4 VB2 . M 3 MG E 1 801 3 MG MG . N 4 NO4 G 1 401 2 NO4 VB2 . O 4 NO4 H 1 401 4 NO4 VB2 . P 5 HOH E 1 901 3 HOH HOH . P 5 HOH E 2 902 2 HOH HOH . Q 5 HOH G 1 501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 NO4 . . . K 4 -14.831 42.366 -37.082 1 68.49 ? C10 NO4 401 C 1 HETATM 2 C C12 NO4 . . . K 4 -16.595 40.884 -36.293 1 68.74 ? C12 NO4 401 C 1 HETATM 3 C C13 NO4 . . . K 4 -18.283 45.184 -30.477 1 69.39 ? C13 NO4 401 C 1 HETATM 4 C C16 NO4 . . . K 4 -16.289 47.004 -31.663 1 67.63 ? C16 NO4 401 C 1 HETATM 5 C C01 NO4 . . . K 4 -16.641 45.622 -32.207 1 65.54 ? C01 NO4 401 C 1 HETATM 6 C C02 NO4 . . . K 4 -17.687 44.901 -31.87 1 71.19 ? C02 NO4 401 C 1 HETATM 7 C C03 NO4 . . . K 4 -18.393 43.704 -32.641 1 72.75 ? C03 NO4 401 C 1 HETATM 8 C C04 NO4 . . . K 4 -18.378 42.246 -32.005 1 73.82 ? C04 NO4 401 C 1 HETATM 9 C C06 NO4 . . . K 4 -17.321 40.72 -33.791 1 73.23 ? C06 NO4 401 C 1 HETATM 10 C C07 NO4 . . . K 4 -16.435 41.305 -34.952 1 68 ? C07 NO4 401 C 1 HETATM 11 C C08 NO4 . . . K 4 -15.44 42.278 -34.719 1 69.88 ? C08 NO4 401 C 1 HETATM 12 C C09 NO4 . . . K 4 -14.649 42.803 -35.763 1 68.24 ? C09 NO4 401 C 1 HETATM 13 C C11 NO4 . . . K 4 -15.808 41.402 -37.344 1 68.45 ? C11 NO4 401 C 1 HETATM 14 C C14 NO4 . . . K 4 -18.145 46.666 -29.98 1 75.81 ? C14 NO4 401 C 1 HETATM 15 C C15 NO4 . . . K 4 -16.778 47.252 -30.209 1 76.22 ? C15 NO4 401 C 1 HETATM 16 N N05 NO4 . . . K 4 -17.194 41.373 -32.437 1 77.68 ? N05 NO4 401 C 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #