data_6P8T # _model_server_result.job_id c35W0pyQUv4RJIPUxogpzg _model_server_result.datetime_utc '2024-12-03 04:15:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 6P8T # _exptl.entry_id 6P8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-benzyl-2-(cyclohex-1-en-1-yl)ethan-1-amine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.113 _cell.angle_gamma 90 _cell.entry_id 6P8T _cell.length_a 92.266 _cell.length_b 172.467 _cell.length_c 191.891 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L 1 1 E,F,G,H,M,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 463 A GLU 463 1_555 I MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc2 I MG MG . A MG 801 1_555 C OE2 GLU 255 C GLU 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 B OE2 GLU 463 B GLU 463 1_555 J MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 J MG MG . B MG 801 1_555 D OE1 GLU 255 D GLU 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 E OE1 GLU 463 E GLU 463 1_555 M MG MG . E MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc6 M MG MG . E MG 801 1_555 P O HOH . E HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc7 M MG MG . E MG 801 1_555 P O HOH . E HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc8 M MG MG . E MG 801 1_555 G OE1 GLU 255 G GLU 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? # _chem_comp.formula 'C15 H21 N' _chem_comp.formula_weight 215.334 _chem_comp.id NO4 _chem_comp.mon_nstd_flag . _chem_comp.name N-benzyl-2-(cyclohex-1-en-1-yl)ethan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C09 NO4 doub 237 n y C10 C11 NO4 sing 238 n y C09 C08 NO4 sing 239 n y C11 C12 NO4 doub 240 n y C08 C07 NO4 doub 241 n y C12 C07 NO4 sing 242 n y C07 C06 NO4 sing 243 n n C04 C03 NO4 sing 244 n n C04 N05 NO4 sing 245 n n C06 N05 NO4 sing 246 n n C03 C02 NO4 sing 247 n n C01 C02 NO4 doub 248 n n C01 C16 NO4 sing 249 n n C02 C13 NO4 sing 250 n n C16 C15 NO4 sing 251 n n C13 C14 NO4 sing 252 n n C15 C14 NO4 sing 253 n n C10 H101 NO4 sing 254 n n C12 H121 NO4 sing 255 n n C13 H131 NO4 sing 256 n n C13 H132 NO4 sing 257 n n C16 H161 NO4 sing 258 n n C16 H162 NO4 sing 259 n n C01 H011 NO4 sing 260 n n C03 H032 NO4 sing 261 n n C03 H031 NO4 sing 262 n n C04 H041 NO4 sing 263 n n C04 H042 NO4 sing 264 n n C06 H062 NO4 sing 265 n n C06 H061 NO4 sing 266 n n C08 H081 NO4 sing 267 n n C09 H091 NO4 sing 268 n n C11 H111 NO4 sing 269 n n C14 H141 NO4 sing 270 n n C14 H142 NO4 sing 271 n n C15 H151 NO4 sing 272 n n C15 H152 NO4 sing 273 n n N05 H051 NO4 sing 274 n n # _atom_sites.entry_id 6P8T _atom_sites.fract_transf_matrix[1][1] 0.010838 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002525 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MG A 1 801 2 MG MG . J 3 MG B 1 801 4 MG MG . K 4 NO4 C 1 401 1 NO4 VB2 . L 4 NO4 D 1 401 3 NO4 VB2 . M 3 MG E 1 801 3 MG MG . N 4 NO4 G 1 401 2 NO4 VB2 . O 4 NO4 H 1 401 4 NO4 VB2 . P 5 HOH E 1 901 3 HOH HOH . P 5 HOH E 2 902 2 HOH HOH . Q 5 HOH G 1 501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 NO4 . . . L 4 17.344 42.732 -4.87 1 61.79 ? C10 NO4 401 D 1 HETATM 2 C C12 NO4 . . . L 4 17.367 41.608 -7.03 1 65 ? C12 NO4 401 D 1 HETATM 3 C C13 NO4 . . . L 4 19.882 38.083 -11.426 1 55.25 ? C13 NO4 401 D 1 HETATM 4 C C16 NO4 . . . L 4 19.744 40.979 -11.948 1 66.18 ? C16 NO4 401 D 1 HETATM 5 C C01 NO4 . . . L 4 19.337 40.309 -10.64 1 62.86 ? C01 NO4 401 D 1 HETATM 6 C C02 NO4 . . . L 4 19.615 39.075 -10.281 1 59.19 ? C02 NO4 401 D 1 HETATM 7 C C03 NO4 . . . L 4 19.928 38.484 -8.845 1 69.83 ? C03 NO4 401 D 1 HETATM 8 C C04 NO4 . . . L 4 18.935 37.426 -8.206 1 68.67 ? C04 NO4 401 D 1 HETATM 9 C C06 NO4 . . . L 4 17.144 39.021 -7.305 1 70.16 ? C06 NO4 401 D 1 HETATM 10 C C07 NO4 . . . L 4 17.213 40.332 -6.437 1 67.72 ? C07 NO4 401 D 1 HETATM 11 C C08 NO4 . . . L 4 17.126 40.304 -5.03 1 60.45 ? C08 NO4 401 D 1 HETATM 12 C C09 NO4 . . . L 4 17.19 41.481 -4.255 1 64.83 ? C09 NO4 401 D 1 HETATM 13 C C11 NO4 . . . L 4 17.432 42.792 -6.264 1 58.55 ? C11 NO4 401 D 1 HETATM 14 C C14 NO4 . . . L 4 20.545 38.708 -12.701 1 75.52 ? C14 NO4 401 D 1 HETATM 15 C C15 NO4 . . . L 4 19.902 39.995 -13.139 1 71.31 ? C15 NO4 401 D 1 HETATM 16 N N05 NO4 . . . L 4 18.158 37.943 -6.999 1 75.49 ? N05 NO4 401 D 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 178 _model_server_stats.create_model_time_ms 229 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #