data_6P8Y # _model_server_result.job_id rIOmzQVtKbulmnHuEWWLDg _model_server_result.datetime_utc '2024-12-11 20:16:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6P8Y # _exptl.entry_id 6P8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.9 _cell.angle_gamma 90 _cell.entry_id 6P8Y _cell.length_a 33.756 _cell.length_b 106.045 _cell.length_c 39.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 26 A CYS 12 1_555 E C01 O5Y . A O5Y 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale2 B SG CYS 26 B CYS 12 1_555 H C01 O5Y . B O5Y 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc1 A OG SER 31 A SER 17 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 C MG MG . A MG 301 1_555 D O2B GDP . A GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 C MG MG . A MG 301 1_555 I O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 C MG MG . A MG 301 1_555 I O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc5 C MG MG . A MG 301 1_555 I O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc6 C MG MG . A MG 301 1_555 I O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc7 B OG SER 31 B SER 17 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc8 F MG MG . B MG 301 1_555 G O1B GDP . B GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc9 F MG MG . B MG 301 1_555 J O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc10 F MG MG . B MG 301 1_555 J O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc11 F MG MG . B MG 301 1_555 J O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc12 F MG MG . B MG 301 1_555 J O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6P8Y _atom_sites.fract_transf_matrix[1][1] 0.029624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00202 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 301 MG MG . D 3 GDP A 1 302 501 GDP GDP . E 4 O5Y A 1 303 701 O5Y UNL . F 2 MG B 1 301 301 MG MG . G 3 GDP B 1 302 501 GDP GDP . H 4 O5Y B 1 303 701 O5Y UNL . I 5 HOH A 1 401 21 HOH HOH . I 5 HOH A 2 402 1 HOH HOH . I 5 HOH A 3 403 9 HOH HOH . I 5 HOH A 4 404 10 HOH HOH . I 5 HOH A 5 405 7 HOH HOH . I 5 HOH A 6 406 6 HOH HOH . I 5 HOH A 7 407 401 HOH HOH . I 5 HOH A 8 408 19 HOH HOH . I 5 HOH A 9 409 11 HOH HOH . I 5 HOH A 10 410 3 HOH HOH . I 5 HOH A 11 411 404 HOH HOH . I 5 HOH A 12 412 22 HOH HOH . I 5 HOH A 13 413 2 HOH HOH . I 5 HOH A 14 414 403 HOH HOH . I 5 HOH A 15 415 18 HOH HOH . I 5 HOH A 16 416 402 HOH HOH . I 5 HOH A 17 417 20 HOH HOH . I 5 HOH A 18 418 4 HOH HOH . I 5 HOH A 19 419 12 HOH HOH . I 5 HOH A 20 420 5 HOH HOH . J 5 HOH B 1 401 401 HOH HOH . J 5 HOH B 2 402 15 HOH HOH . J 5 HOH B 3 403 16 HOH HOH . J 5 HOH B 4 404 403 HOH HOH . J 5 HOH B 5 405 13 HOH HOH . J 5 HOH B 6 406 8 HOH HOH . J 5 HOH B 7 407 14 HOH HOH . J 5 HOH B 8 408 404 HOH HOH . J 5 HOH B 9 409 402 HOH HOH . J 5 HOH B 10 410 17 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.987 _atom_site.Cartn_y 30.533 _atom_site.Cartn_z 27.082 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 52 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 1076 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 1 #