data_6P91 # _model_server_result.job_id Yp-SiD7mwWLkCBEIzGIqLA _model_server_result.datetime_utc '2024-12-02 12:53:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":508}' # _entry.id 6P91 # _exptl.entry_id 6P91 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 9 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P91 _cell.length_a 231.66 _cell.length_b 231.66 _cell.length_c 231.66 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_445 z-1/2,-x-1/2,-y 0 0 1 -1 0 0 0 -1 0 -115.83 -115.83 0 3 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0 -1 0 0 0 -1 1 0 0 -115.83 0 115.83 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 8 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 B 1 NAG A 1079 NAG 5 n E NAG 2 B 2 NAG A 1080 NAG 5 n E BMA 3 B 3 BMA A 1081 BMA 5 n E MAN 4 B 4 MAN A 1082 MAN 6 n F NAG 1 C 1 NAG A 1089 NAG 6 n F NAG 2 C 2 NAG A 1090 NAG 6 n G NAG 1 D 1 NAG A 1099 NAG 6 n G NAG 2 D 2 NAG A 1100 NAG 7 n H NAG 1 E 1 NAG A 1109 NAG 7 n H NAG 2 E 2 NAG A 1110 NAG 7 n H BMA 3 E 3 BMA A 1111 BMA 6 n I NAG 1 F 1 NAG A 1119 NAG 6 n I NAG 2 F 2 NAG A 1120 NAG 6 n J NAG 1 G 1 NAG A 1224 NAG 6 n J NAG 2 G 2 NAG A 1225 NAG 5 n K NAG 1 I 1 NAG a 1365 NAG 5 n K NAG 2 I 2 NAG a 1366 NAG 5 n K BMA 3 I 3 BMA a 1367 BMA 5 n K MAN 4 I 4 MAN a 1368 MAN 7 n L NAG 1 J 1 NAG a 1373 NAG 7 n L NAG 2 J 2 NAG a 1374 NAG 7 n L BMA 3 J 3 BMA a 1375 BMA 8 n M NAG 1 K 1 NAG a 1395 NAG 8 n M NAG 2 K 2 NAG a 1396 NAG 8 n M BMA 3 K 3 BMA a 1397 BMA 8 n M FUC 4 K 4 FUC a 1400 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 86 A CYS 86 1_555 A SG CYS 231 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 118 A CYS 118 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 180 A CYS 180 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 207 A CYS 207 1_555 D SG CYS 101 a CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 23 H CYS 23 1_555 B SG CYS 97 H CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 150 H CYS 155 1_555 B SG CYS 206 H CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 24 L CYS 23 1_555 C SG CYS 90 L CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 C SG CYS 137 L CYS 154 1_555 C SG CYS 197 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 D SG CYS 20 a CYS 279 1_555 D SG CYS 33 a CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 D SG CYS 42 a CYS 301 1_555 D SG CYS 51 a CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 D SG CYS 105 a CYS 364 1_555 D SG CYS 126 a CYS 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 79 A ASN 79 1_555 E C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 89 A ASN 89 1_555 F C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 99 A ASN 99 1_555 G C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 109 A ASN 109 1_555 H C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 A ND2 ASN 119 A ASN 119 1_555 I C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 A ND2 ASN 224 A ASN 224 1_555 J C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 D ND2 ASN 106 a ASN 365 1_555 K C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 D ND2 ASN 114 a ASN 373 1_555 L C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 D ND2 ASN 131 a ASN 390 1_555 N C1 NAG . a NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 D ND2 ASN 136 a ASN 395 1_555 M C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale12 E O4 NAG . B NAG 2 1_555 E C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale13 E O3 BMA . B BMA 3 1_555 E C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale14 F O4 NAG . C NAG 1 1_555 F C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale15 G O4 NAG . D NAG 1 1_555 G C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale16 H O4 NAG . E NAG 1 1_555 H C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale17 H O4 NAG . E NAG 2 1_555 H C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale18 I O4 NAG . F NAG 1 1_555 I C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale19 J O4 NAG . G NAG 1 1_555 J C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale20 K O4 NAG . I NAG 1 1_555 K C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale21 K O4 NAG . I NAG 2 1_555 K C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale22 K O3 BMA . I BMA 3 1_555 K C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale23 L O4 NAG . J NAG 1 1_555 L C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale24 L O4 NAG . J NAG 2 1_555 L C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale25 M O4 NAG . K NAG 1 1_555 M C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale26 M O6 NAG . K NAG 1 1_555 M C1 FUC . K FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale27 M O4 NAG . K NAG 2 1_555 M C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 306 n n C1 O1 NAG sing 307 n n C1 O5 NAG sing 308 n n C1 H1 NAG sing 309 n n C2 C3 NAG sing 310 n n C2 N2 NAG sing 311 n n C2 H2 NAG sing 312 n n C3 C4 NAG sing 313 n n C3 O3 NAG sing 314 n n C3 H3 NAG sing 315 n n C4 C5 NAG sing 316 n n C4 O4 NAG sing 317 n n C4 H4 NAG sing 318 n n C5 C6 NAG sing 319 n n C5 O5 NAG sing 320 n n C5 H5 NAG sing 321 n n C6 O6 NAG sing 322 n n C6 H61 NAG sing 323 n n C6 H62 NAG sing 324 n n C7 C8 NAG sing 325 n n C7 N2 NAG sing 326 n n C7 O7 NAG doub 327 n n C8 H81 NAG sing 328 n n C8 H82 NAG sing 329 n n C8 H83 NAG sing 330 n n N2 HN2 NAG sing 331 n n O1 HO1 NAG sing 332 n n O3 HO3 NAG sing 333 n n O4 HO4 NAG sing 334 n n O6 HO6 NAG sing 335 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6P91 _atom_sites.fract_transf_matrix[1][1] 0.004317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004317 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id N _pdbx_nonpoly_scheme.entity_id 9 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id a _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 508 _pdbx_nonpoly_scheme.auth_seq_num 1390 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 9 -29.346 -47.869 42.514 1 228.45 ? C1 NAG 508 a 1 HETATM 2 C C2 NAG . . . N 9 -29.029 -49.294 42.042 1 254.57 ? C2 NAG 508 a 1 HETATM 3 C C3 NAG . . . N 9 -27.568 -49.642 42.328 1 255.12 ? C3 NAG 508 a 1 HETATM 4 C C4 NAG . . . N 9 -26.639 -48.575 41.765 1 262.29 ? C4 NAG 508 a 1 HETATM 5 C C5 NAG . . . N 9 -27.051 -47.202 42.283 1 256.7 ? C5 NAG 508 a 1 HETATM 6 C C6 NAG . . . N 9 -26.232 -46.073 41.702 1 268.06 ? C6 NAG 508 a 1 HETATM 7 C C7 NAG . . . N 9 -31.032 -50.714 42.118 1 259.04 ? C7 NAG 508 a 1 HETATM 8 C C8 NAG . . . N 9 -31.817 -51.694 42.932 1 279.14 ? C8 NAG 508 a 1 HETATM 9 N N2 NAG . . . N 9 -29.911 -50.255 42.682 1 259.55 ? N2 NAG 508 a 1 HETATM 10 O O3 NAG . . . N 9 -27.261 -50.908 41.755 1 233.07 ? O3 NAG 508 a 1 HETATM 11 O O4 NAG . . . N 9 -25.297 -48.844 42.155 1 259.28 ? O4 NAG 508 a 1 HETATM 12 O O5 NAG . . . N 9 -28.418 -46.949 41.93 1 241.26 ? O5 NAG 508 a 1 HETATM 13 O O6 NAG . . . N 9 -25.242 -46.552 40.802 1 271.93 ? O6 NAG 508 a 1 HETATM 14 O O7 NAG . . . N 9 -31.394 -50.354 41.002 1 239.5 ? O7 NAG 508 a 1 # _model_server_stats.io_time_ms 97 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #