data_6P99 # _model_server_result.job_id exfRuqSHUizdDJMo8oNH9g _model_server_result.datetime_utc '2024-11-28 18:09:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6P99 # _exptl.entry_id 6P99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P99 _cell.length_a 71.883 _cell.length_b 76.822 _cell.length_c 101.247 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P99 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 37 A GLU 37 1_555 G CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc2 A OE2 GLU 37 A GLU 37 1_555 G CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc3 A OE2 GLU 37 A GLU 37 1_555 I CD CD . A CD 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc4 A NE2 HIS 38 A HIS 38 1_555 I CD CD . A CD 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc5 A OE1 GLU 125 A GLU 125 1_555 I CD CD . A CD 507 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc6 A OE2 GLU 125 A GLU 125 1_555 I CD CD . A CD 507 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc7 A OD1 ASP 143 A ASP 143 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc8 A OE1 GLU 147 A GLU 147 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc9 A OE1 GLU 147 A GLU 147 1_555 H CD CD . A CD 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc10 A OE2 GLU 147 A GLU 147 1_555 H CD CD . A CD 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc11 A OE1 GLU 216 A GLU 216 1_555 L CA CA . B CA 302 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc12 A OE2 GLU 216 A GLU 216 1_555 L CA CA . B CA 302 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc13 A OE1 GLU 256 A GLU 256 1_555 G CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc14 A OE2 GLU 256 A GLU 256 1_555 I CD CD . A CD 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc15 F CA CA . A CA 504 3_554 B OD1 ASP 143 B ASP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc16 F CA CA . A CA 504 3_554 B OE1 GLU 147 B GLU 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc17 F CA CA . A CA 504 3_554 B OE2 GLU 147 B GLU 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc18 G CA CA . A CA 505 1_555 M O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc19 H CD CD . A CD 506 1_555 M O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc20 H CD CD . A CD 506 3_554 B OD1 ASP 143 B ASP 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc21 I CD CD . A CD 507 1_555 M O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc22 B OE1 GLU 37 B GLU 37 1_555 L CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc23 B OE2 GLU 37 B GLU 37 1_555 L CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc24 B OE1 GLU 256 B GLU 256 1_555 L CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? # _chem_comp.formula 'C22 H27 N3 O7 S' _chem_comp.formula_weight 477.531 _chem_comp.id 1RG _chem_comp.mon_nstd_flag . _chem_comp.name '(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ERTAPENEM, bound form PRE-ISOMERIZED' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O 1RG doub 1 n n C CA 1RG sing 2 n n C NAX 1RG sing 3 n n N CA 1RG sing 4 n n N CD 1RG sing 5 n n CA CB 1RG sing 6 n n CB CG 1RG sing 7 n n CD CG 1RG sing 8 n n CG SAK 1RG sing 9 n n CAA CAB 1RG sing 10 n n CAA OAC 1RG doub 11 n n CAB CAD 1RG sing 12 n n CAB CAE 1RG sing 13 n n CAD CAH 1RG sing 14 n n CAD NAJ 1RG sing 15 n n CAE CAF 1RG sing 16 n n CAE OAG 1RG sing 17 n n CAH CAI 1RG sing 18 n n CAH CAS 1RG sing 19 n n CAI SAK 1RG sing 20 n n CAI CAL 1RG doub 21 n n NAJ CAL 1RG sing 22 n n CAL CAM 1RG sing 23 n n CAM OAT 1RG doub 24 n n CAM OAU 1RG sing 25 n n NAX CAY 1RG sing 26 n n CAY CAZ 1RG doub 27 n y CAY CBD 1RG sing 28 n y CAZ CBA 1RG sing 29 n y CBA CBB 1RG doub 30 n y CBA CBE 1RG sing 31 n n CBB CBC 1RG sing 32 n y CBC CBD 1RG doub 33 n y CBE OBF 1RG sing 34 n n CBE OBG 1RG doub 35 n n N HN 1RG sing 36 n n CA HA 1RG sing 37 n n CB HB 1RG sing 38 n n CB HBA 1RG sing 39 n n CD HD 1RG sing 40 n n CD HDA 1RG sing 41 n n CG HG 1RG sing 42 n n CAA HAA 1RG sing 43 n n CAB HAB 1RG sing 44 n n CAD HAD 1RG sing 45 n n CAE HAE 1RG sing 46 n n CAF HAF 1RG sing 47 n n CAF HAFA 1RG sing 48 n n CAF HAFB 1RG sing 49 n n OAG HOAG 1RG sing 50 n n CAH HAH 1RG sing 51 n n NAJ HNAJ 1RG sing 52 n n CAS HAS 1RG sing 53 n n CAS HASA 1RG sing 54 n n CAS HASB 1RG sing 55 n n NAX HNAX 1RG sing 56 n n CAZ HAZ 1RG sing 57 n n CBB HBB 1RG sing 58 n n CBC HBC 1RG sing 59 n n CBD HBD 1RG sing 60 n n OAU HOAU 1RG sing 61 n n OBF HOBF 1RG sing 62 n n # _atom_sites.entry_id 6P99 _atom_sites.fract_transf_matrix[1][1] 0.013911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1RG A 1 501 501 1RG ERT . D 3 CL A 1 502 1 CL CL . E 3 CL A 1 503 3 CL CL . F 4 CA A 1 504 1 CA CA . G 4 CA A 1 505 2 CA CA . H 5 CD A 1 506 1 CD CD . I 5 CD A 1 507 2 CD CD . J 5 CD A 1 508 4 CD CD . K 3 CL B 1 301 2 CL CL . L 4 CA B 1 302 3 CA CA . M 6 HOH A 1 601 50 HOH HOH . M 6 HOH A 2 602 31 HOH HOH . M 6 HOH A 3 603 117 HOH HOH . M 6 HOH A 4 604 18 HOH HOH . M 6 HOH A 5 605 116 HOH HOH . M 6 HOH A 6 606 30 HOH HOH . M 6 HOH A 7 607 114 HOH HOH . M 6 HOH A 8 608 104 HOH HOH . M 6 HOH A 9 609 60 HOH HOH . M 6 HOH A 10 610 47 HOH HOH . M 6 HOH A 11 611 4 HOH HOH . M 6 HOH A 12 612 53 HOH HOH . M 6 HOH A 13 613 123 HOH HOH . M 6 HOH A 14 614 61 HOH HOH . M 6 HOH A 15 615 100 HOH HOH . M 6 HOH A 16 616 1 HOH HOH . M 6 HOH A 17 617 69 HOH HOH . M 6 HOH A 18 618 97 HOH HOH . M 6 HOH A 19 619 64 HOH HOH . M 6 HOH A 20 620 91 HOH HOH . M 6 HOH A 21 621 45 HOH HOH . M 6 HOH A 22 622 12 HOH HOH . M 6 HOH A 23 623 52 HOH HOH . M 6 HOH A 24 624 14 HOH HOH . M 6 HOH A 25 625 111 HOH HOH . M 6 HOH A 26 626 109 HOH HOH . M 6 HOH A 27 627 73 HOH HOH . M 6 HOH A 28 628 8 HOH HOH . M 6 HOH A 29 629 81 HOH HOH . M 6 HOH A 30 630 17 HOH HOH . M 6 HOH A 31 631 76 HOH HOH . M 6 HOH A 32 632 98 HOH HOH . M 6 HOH A 33 633 48 HOH HOH . M 6 HOH A 34 634 63 HOH HOH . M 6 HOH A 35 635 99 HOH HOH . M 6 HOH A 36 636 42 HOH HOH . M 6 HOH A 37 637 11 HOH HOH . M 6 HOH A 38 638 57 HOH HOH . M 6 HOH A 39 639 110 HOH HOH . M 6 HOH A 40 640 87 HOH HOH . M 6 HOH A 41 641 44 HOH HOH . M 6 HOH A 42 642 34 HOH HOH . M 6 HOH A 43 643 95 HOH HOH . N 6 HOH B 1 401 106 HOH HOH . N 6 HOH B 2 402 105 HOH HOH . N 6 HOH B 3 403 113 HOH HOH . N 6 HOH B 4 404 67 HOH HOH . N 6 HOH B 5 405 20 HOH HOH . N 6 HOH B 6 406 115 HOH HOH . N 6 HOH B 7 407 23 HOH HOH . N 6 HOH B 8 408 40 HOH HOH . N 6 HOH B 9 409 28 HOH HOH . N 6 HOH B 10 410 19 HOH HOH . N 6 HOH B 11 411 7 HOH HOH . N 6 HOH B 12 412 107 HOH HOH . N 6 HOH B 13 413 6 HOH HOH . N 6 HOH B 14 414 35 HOH HOH . N 6 HOH B 15 415 74 HOH HOH . N 6 HOH B 16 416 121 HOH HOH . N 6 HOH B 17 417 55 HOH HOH . N 6 HOH B 18 418 103 HOH HOH . N 6 HOH B 19 419 118 HOH HOH . N 6 HOH B 20 420 16 HOH HOH . N 6 HOH B 21 421 125 HOH HOH . N 6 HOH B 22 422 92 HOH HOH . N 6 HOH B 23 423 88 HOH HOH . N 6 HOH B 24 424 9 HOH HOH . N 6 HOH B 25 425 22 HOH HOH . N 6 HOH B 26 426 77 HOH HOH . N 6 HOH B 27 427 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 1RG . . . C 2 11.883 -17.838 1.012 1 61.41 ? C 1RG 501 A 1 HETATM 2 N N 1RG . . . C 2 9.532 -17.385 0.832 1 58.5 ? N 1RG 501 A 1 HETATM 3 O O 1RG . . . C 2 11.885 -17.574 -0.186 1 66.25 ? O 1RG 501 A 1 HETATM 4 C CA 1RG . . . C 2 10.606 -17.718 1.749 1 56.54 ? CA 1RG 501 A 1 HETATM 5 C CB 1RG . . . C 2 10.552 -16.638 2.825 1 64.56 ? CB 1RG 501 A 1 HETATM 6 C CD 1RG . . . C 2 8.715 -16.314 1.375 1 62.01 ? CD 1RG 501 A 1 HETATM 7 C CG 1RG . . . C 2 9.055 -16.426 2.851 1 64.56 ? CG 1RG 501 A 1 HETATM 8 C CAA 1RG . . . C 2 3.061 -20.45 2.065 1 54.4 ? CAA 1RG 501 A 1 HETATM 9 C CAB 1RG . . . C 2 3.542 -19.343 3.003 1 60.79 ? CAB 1RG 501 A 1 HETATM 10 O OAC 1RG . . . C 2 3.628 -21.527 1.842 1 41.43 ? OAC 1RG 501 A 1 HETATM 11 C CAD 1RG . . . C 2 4.574 -18.427 2.33 1 65 ? CAD 1RG 501 A 1 HETATM 12 C CAE 1RG . . . C 2 2.313 -18.479 3.308 1 65.87 ? CAE 1RG 501 A 1 HETATM 13 C CAF 1RG . . . C 2 1.072 -19.35 3.46 1 62.28 ? CAF 1RG 501 A 1 HETATM 14 O OAG 1RG . . . C 2 2.466 -17.64 4.472 1 64.48 ? OAG 1RG 501 A 1 HETATM 15 C CAH 1RG . . . C 2 5.633 -17.786 3.256 1 64.41 ? CAH 1RG 501 A 1 HETATM 16 C CAI 1RG . . . C 2 6.923 -18.329 2.693 1 67.21 ? CAI 1RG 501 A 1 HETATM 17 N NAJ 1RG . . . C 2 5.367 -19.139 1.335 1 60.94 ? NAJ 1RG 501 A 1 HETATM 18 S SAK 1RG . . . C 2 8.384 -17.96 3.437 1 89.56 ? SAK 1RG 501 A 1 HETATM 19 C CAL 1RG . . . C 2 6.676 -19.098 1.599 1 62.78 ? CAL 1RG 501 A 1 HETATM 20 C CAM 1RG . . . C 2 7.59 -19.851 0.721 1 55.57 ? CAM 1RG 501 A 1 HETATM 21 C CAS 1RG . . . C 2 5.521 -18.088 4.751 1 61.16 ? CAS 1RG 501 A 1 HETATM 22 O OAT 1RG . . . C 2 8.808 -19.576 0.625 1 60.86 ? OAT 1RG 501 A 1 HETATM 23 O OAU 1RG . . . C 2 7.099 -20.771 0.033 1 42.26 ? OAU 1RG 501 A 1 HETATM 24 N NAX 1RG . . . C 2 12.902 -18.271 1.763 0.45 58.63 ? NAX 1RG 501 A 1 HETATM 25 C CAY 1RG . . . C 2 14.226 -18.512 1.343 0 54.77 ? CAY 1RG 501 A 1 HETATM 26 C CAZ 1RG . . . C 2 15.123 -18.986 2.3 0.9 51.71 ? CAZ 1RG 501 A 1 HETATM 27 C CBA 1RG . . . C 2 16.447 -19.254 1.974 1 47.77 ? CBA 1RG 501 A 1 HETATM 28 C CBB 1RG . . . C 2 16.88 -19.061 0.66 0.63 52.28 ? CBB 1RG 501 A 1 HETATM 29 C CBC 1RG . . . C 2 15.99 -18.597 -0.314 0.82 57.14 ? CBC 1RG 501 A 1 HETATM 30 C CBD 1RG . . . C 2 14.662 -18.326 0.026 0.68 59.47 ? CBD 1RG 501 A 1 HETATM 31 C CBE 1RG . . . C 2 17.381 -19.756 3.048 0 47.05 ? CBE 1RG 501 A 1 HETATM 32 O OBF 1RG . . . C 2 18.604 -19.917 2.798 0.91 43.43 ? OBF 1RG 501 A 1 HETATM 33 O OBG 1RG . . . C 2 16.901 -20.025 4.178 0.92 50.51 ? OBG 1RG 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #