data_6P9E # _model_server_result.job_id Rk2pc6qi9Rea-5qbRs8pVw _model_server_result.datetime_utc '2024-10-10 11:18:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 6P9E # _exptl.entry_id 6P9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.532 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-{[4-(3-amino-4-methylphenyl)-6-methylpyrimidin-2-yl]oxy}-3-methoxy-3,3-diphenylpropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P9E _cell.length_a 96.42 _cell.length_b 96.42 _cell.length_c 96.42 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H27 N3 O4' _chem_comp.formula_weight 469.532 _chem_comp.id O6D _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-{[4-(3-amino-4-methylphenyl)-6-methylpyrimidin-2-yl]oxy}-3-methoxy-3,3-diphenylpropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 O6D doub 216 n y C29 C30 O6D sing 217 n y C28 C27 O6D sing 218 n y C30 C31 O6D doub 219 n y C27 C20 O6D doub 220 n y C31 C20 O6D sing 221 n y C20 C15 O6D sing 222 n n C23 C22 O6D doub 223 n y C23 C24 O6D sing 224 n y C22 C21 O6D sing 225 n y C24 C25 O6D doub 226 n y C21 C15 O6D sing 227 n n C21 C26 O6D doub 228 n y C15 O19 O6D sing 229 n n C15 C14 O6D sing 230 n n C25 C26 O6D sing 231 n y C33 C9 O6D sing 232 n n O17 C16 O6D doub 233 n n O13 C14 O6D sing 234 n n O13 C11 O6D sing 235 n n N10 C9 O6D doub 236 n y N10 C11 O6D sing 237 n y O19 C32 O6D sing 238 n n C14 C16 O6D sing 239 n n C9 C8 O6D sing 240 n y C11 N12 O6D doub 241 n y C16 O18 O6D sing 242 n n N12 C7 O6D sing 243 n y C8 C7 O6D doub 244 n y C7 C6 O6D sing 245 n n C6 C5 O6D doub 246 n y C6 C1 O6D sing 247 n y C5 C4 O6D sing 248 n y C1 C2 O6D doub 249 n y C4 N35 O6D sing 250 n n C4 C3 O6D doub 251 n y C2 C3 O6D sing 252 n y C3 C34 O6D sing 253 n n C5 H1 O6D sing 254 n n C8 H2 O6D sing 255 n n C14 H3 O6D sing 256 n n C24 H4 O6D sing 257 n n C29 H5 O6D sing 258 n n C23 H6 O6D sing 259 n n C25 H7 O6D sing 260 n n C28 H8 O6D sing 261 n n C30 H9 O6D sing 262 n n C1 H10 O6D sing 263 n n C22 H11 O6D sing 264 n n C26 H12 O6D sing 265 n n C27 H13 O6D sing 266 n n C31 H14 O6D sing 267 n n C2 H15 O6D sing 268 n n C34 H16 O6D sing 269 n n C34 H17 O6D sing 270 n n C34 H18 O6D sing 271 n n C33 H19 O6D sing 272 n n C33 H20 O6D sing 273 n n C33 H21 O6D sing 274 n n C32 H22 O6D sing 275 n n C32 H23 O6D sing 276 n n C32 H24 O6D sing 277 n n N35 H25 O6D sing 278 n n N35 H26 O6D sing 279 n n O18 H27 O6D sing 280 n n # _atom_sites.entry_id 6P9E _atom_sites.fract_transf_matrix[1][1] 0.010371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O6D A 1 4000 4000 O6D XXX . C 3 HOH A 1 4101 30 HOH HOH . C 3 HOH A 2 4102 2 HOH HOH . C 3 HOH A 3 4103 38 HOH HOH . C 3 HOH A 4 4104 14 HOH HOH . C 3 HOH A 5 4105 23 HOH HOH . C 3 HOH A 6 4106 41 HOH HOH . C 3 HOH A 7 4107 18 HOH HOH . C 3 HOH A 8 4108 40 HOH HOH . C 3 HOH A 9 4109 7 HOH HOH . C 3 HOH A 10 4110 21 HOH HOH . C 3 HOH A 11 4111 8 HOH HOH . C 3 HOH A 12 4112 15 HOH HOH . C 3 HOH A 13 4113 50 HOH HOH . C 3 HOH A 14 4114 33 HOH HOH . C 3 HOH A 15 4115 51 HOH HOH . C 3 HOH A 16 4116 32 HOH HOH . C 3 HOH A 17 4117 16 HOH HOH . C 3 HOH A 18 4118 10 HOH HOH . C 3 HOH A 19 4119 5 HOH HOH . C 3 HOH A 20 4120 4 HOH HOH . C 3 HOH A 21 4121 55 HOH HOH . C 3 HOH A 22 4122 17 HOH HOH . C 3 HOH A 23 4123 29 HOH HOH . C 3 HOH A 24 4124 25 HOH HOH . C 3 HOH A 25 4125 31 HOH HOH . C 3 HOH A 26 4126 42 HOH HOH . C 3 HOH A 27 4127 3 HOH HOH . C 3 HOH A 28 4128 34 HOH HOH . C 3 HOH A 29 4129 46 HOH HOH . C 3 HOH A 30 4130 13 HOH HOH . C 3 HOH A 31 4131 53 HOH HOH . C 3 HOH A 32 4132 56 HOH HOH . C 3 HOH A 33 4133 49 HOH HOH . C 3 HOH A 34 4134 47 HOH HOH . C 3 HOH A 35 4135 22 HOH HOH . C 3 HOH A 36 4136 28 HOH HOH . C 3 HOH A 37 4137 43 HOH HOH . C 3 HOH A 38 4138 6 HOH HOH . C 3 HOH A 39 4139 1 HOH HOH . C 3 HOH A 40 4140 12 HOH HOH . C 3 HOH A 41 4141 36 HOH HOH . C 3 HOH A 42 4142 39 HOH HOH . C 3 HOH A 43 4143 11 HOH HOH . C 3 HOH A 44 4144 37 HOH HOH . C 3 HOH A 45 4145 48 HOH HOH . C 3 HOH A 46 4146 24 HOH HOH . C 3 HOH A 47 4147 19 HOH HOH . C 3 HOH A 48 4148 45 HOH HOH . C 3 HOH A 49 4149 35 HOH HOH . C 3 HOH A 50 4150 9 HOH HOH . C 3 HOH A 51 4151 27 HOH HOH . C 3 HOH A 52 4152 52 HOH HOH . C 3 HOH A 53 4153 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 O6D . . . B 2 -29.717 4.758 -22.832 1 29.04 ? C4 O6D 4000 A 1 HETATM 2 C C5 O6D . . . B 2 -30.322 4.514 -24.065 1 28.91 ? C5 O6D 4000 A 1 HETATM 3 C C6 O6D . . . B 2 -31.609 4.974 -24.353 1 28.2 ? C6 O6D 4000 A 1 HETATM 4 C C7 O6D . . . B 2 -32.238 4.601 -25.643 1 29.72 ? C7 O6D 4000 A 1 HETATM 5 C C8 O6D . . . B 2 -33.267 5.326 -26.231 1 32.48 ? C8 O6D 4000 A 1 HETATM 6 C C9 O6D . . . B 2 -33.656 4.971 -27.514 1 36.44 ? C9 O6D 4000 A 1 HETATM 7 C C11 O6D . . . B 2 -32.102 3.311 -27.503 1 35.46 ? C11 O6D 4000 A 1 HETATM 8 C C14 O6D . . . B 2 -30.53 1.504 -27.555 1 35.89 ? C14 O6D 4000 A 1 HETATM 9 C C15 O6D . . . B 2 -30.362 0.115 -28.412 1 39.48 ? C15 O6D 4000 A 1 HETATM 10 C C24 O6D . . . B 2 -33.926 -2.3 -28.986 1 42.06 ? C24 O6D 4000 A 1 HETATM 11 C C29 O6D . . . B 2 -28.49 1.091 -32.202 1 35.41 ? C29 O6D 4000 A 1 HETATM 12 C C23 O6D . . . B 2 -32.7 -2.746 -29.439 1 40.18 ? C23 O6D 4000 A 1 HETATM 13 C C25 O6D . . . B 2 -34.016 -1.083 -28.338 1 43.08 ? C25 O6D 4000 A 1 HETATM 14 C C28 O6D . . . B 2 -29.867 1.076 -32.093 1 34.19 ? C28 O6D 4000 A 1 HETATM 15 C C30 O6D . . . B 2 -27.714 0.787 -31.101 1 33.92 ? C30 O6D 4000 A 1 HETATM 16 C C1 O6D . . . B 2 -32.288 5.694 -23.371 1 27.53 ? C1 O6D 4000 A 1 HETATM 17 C C22 O6D . . . B 2 -31.561 -1.979 -29.245 1 39.74 ? C22 O6D 4000 A 1 HETATM 18 C C26 O6D . . . B 2 -32.88 -0.309 -28.145 1 42.84 ? C26 O6D 4000 A 1 HETATM 19 C C27 O6D . . . B 2 -30.469 0.778 -30.88 1 35.07 ? C27 O6D 4000 A 1 HETATM 20 C C31 O6D . . . B 2 -28.313 0.456 -29.894 1 32.96 ? C31 O6D 4000 A 1 HETATM 21 C C2 O6D . . . B 2 -31.703 5.936 -22.139 1 27.99 ? C2 O6D 4000 A 1 HETATM 22 C C21 O6D . . . B 2 -31.633 -0.743 -28.601 1 41.49 ? C21 O6D 4000 A 1 HETATM 23 C C20 O6D . . . B 2 -29.702 0.453 -29.764 1 33.6 ? C20 O6D 4000 A 1 HETATM 24 C C3 O6D . . . B 2 -30.42 5.478 -21.843 1 27.82 ? C3 O6D 4000 A 1 HETATM 25 C C16 O6D . . . B 2 -29.215 2.26 -27.424 1 37.68 ? C16 O6D 4000 A 1 HETATM 26 C C34 O6D . . . B 2 -29.768 5.807 -20.528 1 26.16 ? C34 O6D 4000 A 1 HETATM 27 C C33 O6D . . . B 2 -34.708 5.726 -28.262 1 36.4 ? C33 O6D 4000 A 1 HETATM 28 C C32 O6D . . . B 2 -29.817 -1.227 -26.398 1 45.37 ? C32 O6D 4000 A 1 HETATM 29 N N12 O6D . . . B 2 -31.664 3.568 -26.272 1 33.34 ? N12 O6D 4000 A 1 HETATM 30 N N10 O6D . . . B 2 -33.063 3.951 -28.167 1 35.29 ? N10 O6D 4000 A 1 HETATM 31 N N35 O6D . . . B 2 -28.422 4.319 -22.608 1 29.05 ? N35 O6D 4000 A 1 HETATM 32 O O17 O6D . . . B 2 -28.898 3.137 -28.21 1 35.61 ? O17 O6D 4000 A 1 HETATM 33 O O18 O6D . . . B 2 -28.482 1.893 -26.386 1 37.93 ? O18 O6D 4000 A 1 HETATM 34 O O13 O6D . . . B 2 -31.538 2.299 -28.179 1 35.9 ? O13 O6D 4000 A 1 HETATM 35 O O19 O6D . . . B 2 -29.401 -0.666 -27.657 1 44.93 ? O19 O6D 4000 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #