data_6P9M # _model_server_result.job_id PhWlzpT0BdzOklI0JQ7a6Q _model_server_result.datetime_utc '2024-11-01 05:40:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p9m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6P9M # _exptl.entry_id 6P9M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6P9M _cell.length_a 77.713 _cell.length_b 77.713 _cell.length_c 146.441 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P9M _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -48.813667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 307 A ASN 309 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc2 A OD1 ASN 307 A ASN 309 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc3 A O ALA 308 A ALA 310 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc4 A OE1 GLU 352 A GLU 354 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc5 A OD1 ASN 397 A ASN 399 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc6 A O ASN 398 A ASN 400 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6P9M _atom_sites.fract_transf_matrix[1][1] 0.012868 _atom_sites.fract_transf_matrix[1][2] 0.007429 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 3 O6J A 1 502 1 O6J JFY . D 4 GOL A 1 503 1 GOL GOL . E 4 GOL A 1 504 2 GOL GOL . F 5 IPA A 1 505 1 IPA IPA . G 5 IPA A 1 506 2 IPA IPA . H 5 IPA A 1 507 3 IPA IPA . I 6 HOH A 1 601 86 HOH HOH . I 6 HOH A 2 602 87 HOH HOH . I 6 HOH A 3 603 50 HOH HOH . I 6 HOH A 4 604 93 HOH HOH . I 6 HOH A 5 605 33 HOH HOH . I 6 HOH A 6 606 92 HOH HOH . I 6 HOH A 7 607 77 HOH HOH . I 6 HOH A 8 608 74 HOH HOH . I 6 HOH A 9 609 79 HOH HOH . I 6 HOH A 10 610 61 HOH HOH . I 6 HOH A 11 611 71 HOH HOH . I 6 HOH A 12 612 51 HOH HOH . I 6 HOH A 13 613 59 HOH HOH . I 6 HOH A 14 614 75 HOH HOH . I 6 HOH A 15 615 23 HOH HOH . I 6 HOH A 16 616 30 HOH HOH . I 6 HOH A 17 617 96 HOH HOH . I 6 HOH A 18 618 39 HOH HOH . I 6 HOH A 19 619 69 HOH HOH . I 6 HOH A 20 620 7 HOH HOH . I 6 HOH A 21 621 36 HOH HOH . I 6 HOH A 22 622 43 HOH HOH . I 6 HOH A 23 623 31 HOH HOH . I 6 HOH A 24 624 46 HOH HOH . I 6 HOH A 25 625 16 HOH HOH . I 6 HOH A 26 626 21 HOH HOH . I 6 HOH A 27 627 78 HOH HOH . I 6 HOH A 28 628 20 HOH HOH . I 6 HOH A 29 629 70 HOH HOH . I 6 HOH A 30 630 57 HOH HOH . I 6 HOH A 31 631 6 HOH HOH . I 6 HOH A 32 632 41 HOH HOH . I 6 HOH A 33 633 18 HOH HOH . I 6 HOH A 34 634 58 HOH HOH . I 6 HOH A 35 635 68 HOH HOH . I 6 HOH A 36 636 63 HOH HOH . I 6 HOH A 37 637 64 HOH HOH . I 6 HOH A 38 638 9 HOH HOH . I 6 HOH A 39 639 12 HOH HOH . I 6 HOH A 40 640 88 HOH HOH . I 6 HOH A 41 641 26 HOH HOH . I 6 HOH A 42 642 97 HOH HOH . I 6 HOH A 43 643 8 HOH HOH . I 6 HOH A 44 644 67 HOH HOH . I 6 HOH A 45 645 60 HOH HOH . I 6 HOH A 46 646 56 HOH HOH . I 6 HOH A 47 647 17 HOH HOH . I 6 HOH A 48 648 65 HOH HOH . I 6 HOH A 49 649 52 HOH HOH . I 6 HOH A 50 650 38 HOH HOH . I 6 HOH A 51 651 66 HOH HOH . I 6 HOH A 52 652 100 HOH HOH . I 6 HOH A 53 653 32 HOH HOH . I 6 HOH A 54 654 95 HOH HOH . I 6 HOH A 55 655 1 HOH HOH . I 6 HOH A 56 656 37 HOH HOH . I 6 HOH A 57 657 25 HOH HOH . I 6 HOH A 58 658 90 HOH HOH . I 6 HOH A 59 659 40 HOH HOH . I 6 HOH A 60 660 15 HOH HOH . I 6 HOH A 61 661 91 HOH HOH . I 6 HOH A 62 662 28 HOH HOH . I 6 HOH A 63 663 24 HOH HOH . I 6 HOH A 64 664 55 HOH HOH . I 6 HOH A 65 665 44 HOH HOH . I 6 HOH A 66 666 5 HOH HOH . I 6 HOH A 67 667 101 HOH HOH . I 6 HOH A 68 668 83 HOH HOH . I 6 HOH A 69 669 89 HOH HOH . I 6 HOH A 70 670 10 HOH HOH . I 6 HOH A 71 671 27 HOH HOH . I 6 HOH A 72 672 54 HOH HOH . I 6 HOH A 73 673 85 HOH HOH . I 6 HOH A 74 674 19 HOH HOH . I 6 HOH A 75 675 42 HOH HOH . I 6 HOH A 76 676 14 HOH HOH . I 6 HOH A 77 677 29 HOH HOH . I 6 HOH A 78 678 98 HOH HOH . I 6 HOH A 79 679 49 HOH HOH . I 6 HOH A 80 680 34 HOH HOH . I 6 HOH A 81 681 35 HOH HOH . I 6 HOH A 82 682 47 HOH HOH . I 6 HOH A 83 683 72 HOH HOH . I 6 HOH A 84 684 48 HOH HOH . I 6 HOH A 85 685 45 HOH HOH . I 6 HOH A 86 686 73 HOH HOH . I 6 HOH A 87 687 22 HOH HOH . I 6 HOH A 88 688 13 HOH HOH . I 6 HOH A 89 689 3 HOH HOH . I 6 HOH A 90 690 62 HOH HOH . I 6 HOH A 91 691 4 HOH HOH . I 6 HOH A 92 692 76 HOH HOH . I 6 HOH A 93 693 11 HOH HOH . I 6 HOH A 94 694 53 HOH HOH . I 6 HOH A 95 695 99 HOH HOH . I 6 HOH A 96 696 2 HOH HOH . I 6 HOH A 97 697 81 HOH HOH . I 6 HOH A 98 698 80 HOH HOH . I 6 HOH A 99 699 84 HOH HOH . I 6 HOH A 100 700 94 HOH HOH . I 6 HOH A 101 701 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 28.713 -24.461 -17.207 1 74.4 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . D 4 27.732 -24.186 -18.154 1 71.58 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . D 4 28.401 -25.854 -16.621 1 78.13 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . D 4 27.202 -25.869 -15.922 1 78.34 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . D 4 29.608 -26.176 -15.718 1 77.16 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . D 4 30.729 -26.256 -16.543 1 77.7 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #