data_6P9N # _model_server_result.job_id SyoYZgPqnLnjZVExbHQIuw _model_server_result.datetime_utc '2024-11-23 16:47:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":511}' # _entry.id 6P9N # _exptl.entry_id 6P9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.796 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-N~1~-(2-aminoethyl)-N~3~-(4-chloro-3-fluorophenyl)piperidine-1,3-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P9N _cell.length_a 66.36 _cell.length_b 67.85 _cell.length_c 86.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 54 1_555 A SG CYS 33 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 78 A CYS 119 1_555 A SG CYS 91 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 A SG CYS 104 A CYS 218 1_555 A SG CYS 133 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 114 A CYS 228 1_555 A SG CYS 125 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 A SG CYS 182 A CYS 296 1_555 A SG CYS 201 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 247 A CYS 378 1_555 A SG CYS 308 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf7 A SG CYS 254 A CYS 385 1_555 A SG CYS 281 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 A SG CYS 264 A CYS 395 1_555 A SG CYS 273 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? covale ? covale1 A ND2 ASN 120 A ASN 234 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 127 A ASN 241 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 148 A ASN 262 1_555 D C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 A ND2 ASN 162 A ASN 276 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 A ND2 ASN 175 A ASN 289 1_555 F C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 A ND2 ASN 181 A ASN 295 1_555 G C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 A ND2 ASN 204 A ASN 334 1_555 H C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale8 A ND2 ASN 225 A ASN 355 1_555 J C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale9 A ND2 ASN 255 A ASN 386 1_555 I C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 A ND2 ASN 311 A ASN 448 1_555 K C1 NAG . A NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C15 H20 Cl F N4 O2' _chem_comp.formula_weight 342.796 _chem_comp.id O51 _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-N~1~-(2-aminoethyl)-N~3~-(4-chloro-3-fluorophenyl)piperidine-1,3-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 O51 sing 300 n n C02 C03 O51 sing 301 n n C03 N04 O51 sing 302 n n O23 C05 O51 doub 303 n n N04 C05 O51 sing 304 n n C05 N06 O51 sing 305 n n N06 C22 O51 sing 306 n n N06 C07 O51 sing 307 n n C22 C21 O51 sing 308 n n C07 C08 O51 sing 309 n n C21 C20 O51 sing 310 n n C20 C08 O51 sing 311 n n C08 C09 O51 sing 312 n n O10 C09 O51 doub 313 n n C09 N11 O51 sing 314 n n N11 C12 O51 sing 315 n n C12 C13 O51 doub 316 n y C12 C19 O51 sing 317 n y C13 C14 O51 sing 318 n y C19 C18 O51 doub 319 n y C14 F15 O51 sing 320 n n C14 C16 O51 doub 321 n y C18 C16 O51 sing 322 n y C16 CL1 O51 sing 323 n n C02 H1 O51 sing 324 n n C02 H2 O51 sing 325 n n C03 H3 O51 sing 326 n n C03 H4 O51 sing 327 n n C07 H5 O51 sing 328 n n C07 H6 O51 sing 329 n n C08 H7 O51 sing 330 n n C13 H8 O51 sing 331 n n C18 H9 O51 sing 332 n n C19 H10 O51 sing 333 n n C20 H11 O51 sing 334 n n C20 H12 O51 sing 335 n n C21 H13 O51 sing 336 n n C21 H14 O51 sing 337 n n C22 H15 O51 sing 338 n n C22 H16 O51 sing 339 n n N01 H17 O51 sing 340 n n N01 H18 O51 sing 341 n n N04 H20 O51 sing 342 n n N11 H21 O51 sing 343 n n # _atom_sites.entry_id 6P9N _atom_sites.fract_transf_matrix[1][1] 0.015069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 502 NAG NAG . C 2 NAG A 1 502 503 NAG NAG . D 2 NAG A 1 503 504 NAG NAG . E 2 NAG A 1 504 505 NAG NAG . F 2 NAG A 1 505 506 NAG NAG . G 2 NAG A 1 506 507 NAG NAG . H 2 NAG A 1 507 508 NAG NAG . I 2 NAG A 1 508 509 NAG NAG . J 2 NAG A 1 509 510 NAG NAG . K 2 NAG A 1 510 511 NAG NAG . L 3 O51 A 1 511 2 O51 AO7 . M 4 EPE A 1 512 1 EPE EPE . N 5 HOH A 1 601 10 HOH HOH . N 5 HOH A 2 602 5 HOH HOH . N 5 HOH A 3 603 27 HOH HOH . N 5 HOH A 4 604 17 HOH HOH . N 5 HOH A 5 605 2 HOH HOH . N 5 HOH A 6 606 8 HOH HOH . N 5 HOH A 7 607 24 HOH HOH . N 5 HOH A 8 608 11 HOH HOH . N 5 HOH A 9 609 16 HOH HOH . N 5 HOH A 10 610 21 HOH HOH . N 5 HOH A 11 611 3 HOH HOH . N 5 HOH A 12 612 13 HOH HOH . N 5 HOH A 13 613 6 HOH HOH . N 5 HOH A 14 614 12 HOH HOH . N 5 HOH A 15 615 25 HOH HOH . N 5 HOH A 16 616 14 HOH HOH . N 5 HOH A 17 617 1 HOH HOH . N 5 HOH A 18 618 18 HOH HOH . N 5 HOH A 19 619 19 HOH HOH . N 5 HOH A 20 620 28 HOH HOH . N 5 HOH A 21 621 22 HOH HOH . N 5 HOH A 22 622 26 HOH HOH . N 5 HOH A 23 623 20 HOH HOH . N 5 HOH A 24 624 15 HOH HOH . N 5 HOH A 25 625 4 HOH HOH . N 5 HOH A 26 626 23 HOH HOH . N 5 HOH A 27 627 7 HOH HOH . N 5 HOH A 28 628 9 HOH HOH . N 5 HOH A 29 629 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 O51 . . . L 3 -1.233 9.826 -15.296 1 48.67 ? C02 O51 511 A 1 HETATM 2 C C03 O51 . . . L 3 -0.131 10.936 -14.982 1 46.82 ? C03 O51 511 A 1 HETATM 3 C C05 O51 . . . L 3 -0.119 12.959 -13.337 1 57.78 ? C05 O51 511 A 1 HETATM 4 C C07 O51 . . . L 3 -0.76 12.758 -10.819 1 42.91 ? C07 O51 511 A 1 HETATM 5 C C08 O51 . . . L 3 -0.302 13.434 -9.46 1 42.32 ? C08 O51 511 A 1 HETATM 6 C C09 O51 . . . L 3 -0.392 12.431 -8.195 1 42.54 ? C09 O51 511 A 1 HETATM 7 O O10 O51 . . . L 3 -0.304 11.228 -8.421 1 44.87 ? O10 O51 511 A 1 HETATM 8 C C12 O51 . . . L 3 -0.725 12.17 -5.555 1 43.35 ? C12 O51 511 A 1 HETATM 9 C C13 O51 . . . L 3 -0.681 10.767 -5.518 1 40.7 ? C13 O51 511 A 1 HETATM 10 C C14 O51 . . . L 3 -0.835 10.005 -4.309 1 40.8 ? C14 O51 511 A 1 HETATM 11 C C16 O51 . . . L 3 -1.059 10.765 -3.076 1 42.24 ? C16 O51 511 A 1 HETATM 12 C C18 O51 . . . L 3 -1.11 12.158 -3.121 1 43.15 ? C18 O51 511 A 1 HETATM 13 C C19 O51 . . . L 3 -0.952 12.852 -4.338 1 42.76 ? C19 O51 511 A 1 HETATM 14 C C20 O51 . . . L 3 1.148 13.991 -9.692 1 42.64 ? C20 O51 511 A 1 HETATM 15 C C21 O51 . . . L 3 1.1 15.16 -10.746 1 45.27 ? C21 O51 511 A 1 HETATM 16 C C22 O51 . . . L 3 -0.079 14.993 -11.776 1 44.82 ? C22 O51 511 A 1 HETATM 17 F F15 O51 . . . L 3 -0.787 8.673 -4.24 1 41.42 ? F15 O51 511 A 1 HETATM 18 N N01 O51 . . . L 3 -0.623 8.595 -15.964 1 45.23 ? N01 O51 511 A 1 HETATM 19 N N04 O51 . . . L 3 -0.34 11.529 -13.623 1 47.83 ? N04 O51 511 A 1 HETATM 20 N N06 O51 . . . L 3 -0.325 13.561 -11.997 1 49.66 ? N06 O51 511 A 1 HETATM 21 N N11 O51 . . . L 3 -0.586 12.935 -6.815 1 41.3 ? N11 O51 511 A 1 HETATM 22 O O23 O51 . . . L 3 0.248 13.677 -14.27 1 57.77 ? O23 O51 511 A 1 HETATM 23 CL CL1 O51 . . . L 3 -1.244 9.874 -1.617 1 47.49 ? CL1 O51 511 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #