data_6P9P # _model_server_result.job_id PzW9TCeW3an61TKBG03MAQ _model_server_result.datetime_utc '2024-11-18 16:24:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6P9P # _exptl.entry_id 6P9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P9P _cell.length_a 96.228 _cell.length_b 96.228 _cell.length_c 96.228 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z+1/2,-x+1/2,-y 0 0 1 -1 0 0 0 -1 0 48.114 48.114 0 3 'crystal symmetry operation' 12_554 -y+1/2,-z,x-1/2 0 -1 0 0 0 -1 1 0 0 48.114 0 -48.114 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6P9P _atom_sites.fract_transf_matrix[1][1] 0.010392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 401 401 PO4 PO4 . C 2 PO4 A 1 402 402 PO4 PO4 . D 3 DMS A 1 403 403 DMS DMS . E 3 DMS A 1 404 405 DMS DMS . F 3 DMS A 1 405 404 DMS DMS . G 4 O5J A 1 406 501 O5J LI1 . H 5 HOH A 1 501 150 HOH HOH . H 5 HOH A 2 502 164 HOH HOH . H 5 HOH A 3 503 85 HOH HOH . H 5 HOH A 4 504 136 HOH HOH . H 5 HOH A 5 505 70 HOH HOH . H 5 HOH A 6 506 21 HOH HOH . H 5 HOH A 7 507 91 HOH HOH . H 5 HOH A 8 508 1 HOH HOH . H 5 HOH A 9 509 43 HOH HOH . H 5 HOH A 10 510 11 HOH HOH . H 5 HOH A 11 511 105 HOH HOH . H 5 HOH A 12 512 132 HOH HOH . H 5 HOH A 13 513 76 HOH HOH . H 5 HOH A 14 514 139 HOH HOH . H 5 HOH A 15 515 22 HOH HOH . H 5 HOH A 16 516 171 HOH HOH . H 5 HOH A 17 517 2 HOH HOH . H 5 HOH A 18 518 16 HOH HOH . H 5 HOH A 19 519 131 HOH HOH . H 5 HOH A 20 520 29 HOH HOH . H 5 HOH A 21 521 170 HOH HOH . H 5 HOH A 22 522 92 HOH HOH . H 5 HOH A 23 523 93 HOH HOH . H 5 HOH A 24 524 79 HOH HOH . H 5 HOH A 25 525 32 HOH HOH . H 5 HOH A 26 526 95 HOH HOH . H 5 HOH A 27 527 57 HOH HOH . H 5 HOH A 28 528 111 HOH HOH . H 5 HOH A 29 529 108 HOH HOH . H 5 HOH A 30 530 75 HOH HOH . H 5 HOH A 31 531 3 HOH HOH . H 5 HOH A 32 532 61 HOH HOH . H 5 HOH A 33 533 48 HOH HOH . H 5 HOH A 34 534 63 HOH HOH . H 5 HOH A 35 535 72 HOH HOH . H 5 HOH A 36 536 40 HOH HOH . H 5 HOH A 37 537 69 HOH HOH . H 5 HOH A 38 538 58 HOH HOH . H 5 HOH A 39 539 130 HOH HOH . H 5 HOH A 40 540 101 HOH HOH . H 5 HOH A 41 541 15 HOH HOH . H 5 HOH A 42 542 71 HOH HOH . H 5 HOH A 43 543 153 HOH HOH . H 5 HOH A 44 544 123 HOH HOH . H 5 HOH A 45 545 46 HOH HOH . H 5 HOH A 46 546 56 HOH HOH . H 5 HOH A 47 547 167 HOH HOH . H 5 HOH A 48 548 62 HOH HOH . H 5 HOH A 49 549 110 HOH HOH . H 5 HOH A 50 550 59 HOH HOH . H 5 HOH A 51 551 53 HOH HOH . H 5 HOH A 52 552 64 HOH HOH . H 5 HOH A 53 553 77 HOH HOH . H 5 HOH A 54 554 8 HOH HOH . H 5 HOH A 55 555 7 HOH HOH . H 5 HOH A 56 556 4 HOH HOH . H 5 HOH A 57 557 5 HOH HOH . H 5 HOH A 58 558 25 HOH HOH . H 5 HOH A 59 559 151 HOH HOH . H 5 HOH A 60 560 52 HOH HOH . H 5 HOH A 61 561 23 HOH HOH . H 5 HOH A 62 562 143 HOH HOH . H 5 HOH A 63 563 10 HOH HOH . H 5 HOH A 64 564 19 HOH HOH . H 5 HOH A 65 565 33 HOH HOH . H 5 HOH A 66 566 102 HOH HOH . H 5 HOH A 67 567 90 HOH HOH . H 5 HOH A 68 568 30 HOH HOH . H 5 HOH A 69 569 87 HOH HOH . H 5 HOH A 70 570 41 HOH HOH . H 5 HOH A 71 571 45 HOH HOH . H 5 HOH A 72 572 18 HOH HOH . H 5 HOH A 73 573 154 HOH HOH . H 5 HOH A 74 574 96 HOH HOH . H 5 HOH A 75 575 89 HOH HOH . H 5 HOH A 76 576 169 HOH HOH . H 5 HOH A 77 577 38 HOH HOH . H 5 HOH A 78 578 99 HOH HOH . H 5 HOH A 79 579 83 HOH HOH . H 5 HOH A 80 580 50 HOH HOH . H 5 HOH A 81 581 81 HOH HOH . H 5 HOH A 82 582 49 HOH HOH . H 5 HOH A 83 583 73 HOH HOH . H 5 HOH A 84 584 47 HOH HOH . H 5 HOH A 85 585 74 HOH HOH . H 5 HOH A 86 586 119 HOH HOH . H 5 HOH A 87 587 68 HOH HOH . H 5 HOH A 88 588 186 HOH HOH . H 5 HOH A 89 589 6 HOH HOH . H 5 HOH A 90 590 115 HOH HOH . H 5 HOH A 91 591 84 HOH HOH . H 5 HOH A 92 592 141 HOH HOH . H 5 HOH A 93 593 148 HOH HOH . H 5 HOH A 94 594 17 HOH HOH . H 5 HOH A 95 595 42 HOH HOH . H 5 HOH A 96 596 118 HOH HOH . H 5 HOH A 97 597 78 HOH HOH . H 5 HOH A 98 598 124 HOH HOH . H 5 HOH A 99 599 27 HOH HOH . H 5 HOH A 100 600 66 HOH HOH . H 5 HOH A 101 601 31 HOH HOH . H 5 HOH A 102 602 137 HOH HOH . H 5 HOH A 103 603 54 HOH HOH . H 5 HOH A 104 604 65 HOH HOH . H 5 HOH A 105 605 97 HOH HOH . H 5 HOH A 106 606 12 HOH HOH . H 5 HOH A 107 607 55 HOH HOH . H 5 HOH A 108 608 120 HOH HOH . H 5 HOH A 109 609 86 HOH HOH . H 5 HOH A 110 610 13 HOH HOH . H 5 HOH A 111 611 24 HOH HOH . H 5 HOH A 112 612 146 HOH HOH . H 5 HOH A 113 613 80 HOH HOH . H 5 HOH A 114 614 35 HOH HOH . H 5 HOH A 115 615 94 HOH HOH . H 5 HOH A 116 616 142 HOH HOH . H 5 HOH A 117 617 106 HOH HOH . H 5 HOH A 118 618 34 HOH HOH . H 5 HOH A 119 619 88 HOH HOH . H 5 HOH A 120 620 107 HOH HOH . H 5 HOH A 121 621 159 HOH HOH . H 5 HOH A 122 622 36 HOH HOH . H 5 HOH A 123 623 157 HOH HOH . H 5 HOH A 124 624 44 HOH HOH . H 5 HOH A 125 625 145 HOH HOH . H 5 HOH A 126 626 51 HOH HOH . H 5 HOH A 127 627 162 HOH HOH . H 5 HOH A 128 628 20 HOH HOH . H 5 HOH A 129 629 26 HOH HOH . H 5 HOH A 130 630 67 HOH HOH . H 5 HOH A 131 631 82 HOH HOH . H 5 HOH A 132 632 60 HOH HOH . H 5 HOH A 133 633 39 HOH HOH . H 5 HOH A 134 634 138 HOH HOH . H 5 HOH A 135 635 114 HOH HOH . H 5 HOH A 136 636 122 HOH HOH . H 5 HOH A 137 637 161 HOH HOH . H 5 HOH A 138 638 9 HOH HOH . H 5 HOH A 139 639 179 HOH HOH . H 5 HOH A 140 640 113 HOH HOH . H 5 HOH A 141 641 125 HOH HOH . H 5 HOH A 142 642 191 HOH HOH . H 5 HOH A 143 643 181 HOH HOH . H 5 HOH A 144 644 98 HOH HOH . H 5 HOH A 145 645 189 HOH HOH . H 5 HOH A 146 646 134 HOH HOH . H 5 HOH A 147 647 190 HOH HOH . H 5 HOH A 148 648 109 HOH HOH . H 5 HOH A 149 649 149 HOH HOH . H 5 HOH A 150 650 152 HOH HOH . H 5 HOH A 151 651 37 HOH HOH . H 5 HOH A 152 652 188 HOH HOH . H 5 HOH A 153 653 104 HOH HOH . H 5 HOH A 154 654 168 HOH HOH . H 5 HOH A 155 655 175 HOH HOH . H 5 HOH A 156 656 160 HOH HOH . H 5 HOH A 157 657 194 HOH HOH . H 5 HOH A 158 658 140 HOH HOH . H 5 HOH A 159 659 126 HOH HOH . H 5 HOH A 160 660 174 HOH HOH . H 5 HOH A 161 661 133 HOH HOH . H 5 HOH A 162 662 100 HOH HOH . H 5 HOH A 163 663 166 HOH HOH . H 5 HOH A 164 664 144 HOH HOH . H 5 HOH A 165 665 121 HOH HOH . H 5 HOH A 166 666 135 HOH HOH . H 5 HOH A 167 667 176 HOH HOH . H 5 HOH A 168 668 163 HOH HOH . H 5 HOH A 169 669 156 HOH HOH . H 5 HOH A 170 670 14 HOH HOH . H 5 HOH A 171 671 116 HOH HOH . H 5 HOH A 172 672 180 HOH HOH . H 5 HOH A 173 673 187 HOH HOH . H 5 HOH A 174 674 129 HOH HOH . H 5 HOH A 175 675 158 HOH HOH . H 5 HOH A 176 676 155 HOH HOH . H 5 HOH A 177 677 183 HOH HOH . H 5 HOH A 178 678 128 HOH HOH . H 5 HOH A 179 679 182 HOH HOH . H 5 HOH A 180 680 192 HOH HOH . H 5 HOH A 181 681 193 HOH HOH . H 5 HOH A 182 682 172 HOH HOH . H 5 HOH A 183 683 165 HOH HOH . H 5 HOH A 184 684 117 HOH HOH . H 5 HOH A 185 685 178 HOH HOH . H 5 HOH A 186 686 147 HOH HOH . H 5 HOH A 187 687 177 HOH HOH . H 5 HOH A 188 688 127 HOH HOH . H 5 HOH A 189 689 173 HOH HOH . H 5 HOH A 190 690 103 HOH HOH . H 5 HOH A 191 691 28 HOH HOH . H 5 HOH A 192 692 112 HOH HOH . H 5 HOH A 193 693 185 HOH HOH . H 5 HOH A 194 694 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 3 28.107 -14.196 4.321 1 65.82 ? S DMS 404 A 1 HETATM 2 O O DMS . . . E 3 28.959 -15.351 3.89 1 63.42 ? O DMS 404 A 1 HETATM 3 C C1 DMS . . . E 3 26.901 -13.816 3.02 1 63.3 ? C1 DMS 404 A 1 HETATM 4 C C2 DMS . . . E 3 26.994 -14.702 5.664 1 67.04 ? C2 DMS 404 A 1 HETATM 5 H H11 DMS . . . E 3 27.382 -13.296 2.233 1 75.92 ? H11 DMS 404 A 1 HETATM 6 H H12 DMS . . . E 3 26.127 -13.213 3.42 1 75.92 ? H12 DMS 404 A 1 HETATM 7 H H13 DMS . . . E 3 26.488 -14.717 2.646 1 75.92 ? H13 DMS 404 A 1 HETATM 8 H H21 DMS . . . E 3 27.564 -14.947 6.522 1 80.42 ? H21 DMS 404 A 1 HETATM 9 H H22 DMS . . . E 3 26.435 -15.548 5.359 1 80.42 ? H22 DMS 404 A 1 HETATM 10 H H23 DMS . . . E 3 26.334 -13.907 5.895 1 80.42 ? H23 DMS 404 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #