data_6P9Z # _model_server_result.job_id s4_GCskbAWelWacUyHy0VQ _model_server_result.datetime_utc '2024-11-18 19:21:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6P9Z # _exptl.entry_id 6P9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6P9Z _cell.length_a 79.033 _cell.length_b 79.033 _cell.length_c 109.093 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 237 n y N1 C8A MTX sing 238 n y C2 NA2 MTX sing 239 n n C2 N3 MTX sing 240 n y NA2 HN21 MTX sing 241 n n NA2 HN22 MTX sing 242 n n N3 C4 MTX doub 243 n y C4 NA4 MTX sing 244 n n C4 C4A MTX sing 245 n y NA4 HN41 MTX sing 246 n n NA4 HN42 MTX sing 247 n n C4A N5 MTX sing 248 n y C4A C8A MTX doub 249 n y N5 C6 MTX doub 250 n y C6 C7 MTX sing 251 n y C6 C9 MTX sing 252 n n C7 N8 MTX doub 253 n y C7 H7 MTX sing 254 n n N8 C8A MTX sing 255 n y C9 N10 MTX sing 256 n n C9 H91 MTX sing 257 n n C9 H92 MTX sing 258 n n N10 CM MTX sing 259 n n N10 C14 MTX sing 260 n n CM HM1 MTX sing 261 n n CM HM2 MTX sing 262 n n CM HM3 MTX sing 263 n n C11 C12 MTX doub 264 n y C11 C16 MTX sing 265 n y C11 C MTX sing 266 n n C12 C13 MTX sing 267 n y C12 H12 MTX sing 268 n n C13 C14 MTX doub 269 n y C13 H13 MTX sing 270 n n C14 C15 MTX sing 271 n y C15 C16 MTX doub 272 n y C15 H15 MTX sing 273 n n C16 H16 MTX sing 274 n n C O MTX doub 275 n n C N MTX sing 276 n n N CA MTX sing 277 n n N HN MTX sing 278 n n CA CT MTX sing 279 n n CA CB MTX sing 280 n n CA HA MTX sing 281 n n CT O1 MTX doub 282 n n CT O2 MTX sing 283 n n O2 HO2 MTX sing 284 n n CB CG MTX sing 285 n n CB HB1 MTX sing 286 n n CB HB2 MTX sing 287 n n CG CD MTX sing 288 n n CG HG1 MTX sing 289 n n CG HG2 MTX sing 290 n n CD OE1 MTX doub 291 n n CD OE2 MTX sing 292 n n OE2 HOE2 MTX sing 293 n n # _atom_sites.entry_id 6P9Z _atom_sites.fract_transf_matrix[1][1] 0.012653 _atom_sites.fract_transf_matrix[1][2] 0.007305 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX X 1 201 164 MTX MTX . C 3 NAP X 1 202 207 NAP NAP . D 4 GOL X 1 203 221 GOL GOL . E 5 HOH X 1 301 30 HOH HOH . E 5 HOH X 2 302 59 HOH HOH . E 5 HOH X 3 303 43 HOH HOH . E 5 HOH X 4 304 35 HOH HOH . E 5 HOH X 5 305 40 HOH HOH . E 5 HOH X 6 306 11 HOH HOH . E 5 HOH X 7 307 62 HOH HOH . E 5 HOH X 8 308 12 HOH HOH . E 5 HOH X 9 309 38 HOH HOH . E 5 HOH X 10 310 21 HOH HOH . E 5 HOH X 11 311 4 HOH HOH . E 5 HOH X 12 312 45 HOH HOH . E 5 HOH X 13 313 44 HOH HOH . E 5 HOH X 14 314 55 HOH HOH . E 5 HOH X 15 315 36 HOH HOH . E 5 HOH X 16 316 49 HOH HOH . E 5 HOH X 17 317 53 HOH HOH . E 5 HOH X 18 318 46 HOH HOH . E 5 HOH X 19 319 56 HOH HOH . E 5 HOH X 20 320 13 HOH HOH . E 5 HOH X 21 321 5 HOH HOH . E 5 HOH X 22 322 18 HOH HOH . E 5 HOH X 23 323 3 HOH HOH . E 5 HOH X 24 324 48 HOH HOH . E 5 HOH X 25 325 8 HOH HOH . E 5 HOH X 26 326 10 HOH HOH . E 5 HOH X 27 327 57 HOH HOH . E 5 HOH X 28 328 60 HOH HOH . E 5 HOH X 29 329 34 HOH HOH . E 5 HOH X 30 330 61 HOH HOH . E 5 HOH X 31 331 20 HOH HOH . E 5 HOH X 32 332 41 HOH HOH . E 5 HOH X 33 333 47 HOH HOH . E 5 HOH X 34 334 24 HOH HOH . E 5 HOH X 35 335 6 HOH HOH . E 5 HOH X 36 336 51 HOH HOH . E 5 HOH X 37 337 2 HOH HOH . E 5 HOH X 38 338 27 HOH HOH . E 5 HOH X 39 339 14 HOH HOH . E 5 HOH X 40 340 7 HOH HOH . E 5 HOH X 41 341 32 HOH HOH . E 5 HOH X 42 342 31 HOH HOH . E 5 HOH X 43 343 22 HOH HOH . E 5 HOH X 44 344 33 HOH HOH . E 5 HOH X 45 345 29 HOH HOH . E 5 HOH X 46 346 1 HOH HOH . E 5 HOH X 47 347 25 HOH HOH . E 5 HOH X 48 348 39 HOH HOH . E 5 HOH X 49 349 64 HOH HOH . E 5 HOH X 50 350 58 HOH HOH . E 5 HOH X 51 351 9 HOH HOH . E 5 HOH X 52 352 23 HOH HOH . E 5 HOH X 53 353 16 HOH HOH . E 5 HOH X 54 354 63 HOH HOH . E 5 HOH X 55 355 42 HOH HOH . E 5 HOH X 56 356 50 HOH HOH . E 5 HOH X 57 357 15 HOH HOH . E 5 HOH X 58 358 52 HOH HOH . E 5 HOH X 59 359 54 HOH HOH . E 5 HOH X 60 360 19 HOH HOH . E 5 HOH X 61 361 28 HOH HOH . E 5 HOH X 62 362 26 HOH HOH . E 5 HOH X 63 363 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . B 2 -27.765 -7.974 41.938 1 17.53 ? N1 MTX 201 X 1 HETATM 2 C C2 MTX . . . B 2 -26.841 -7.882 40.911 1 17.35 ? C2 MTX 201 X 1 HETATM 3 N NA2 MTX . . . B 2 -26.283 -6.718 40.622 1 22.9 ? NA2 MTX 201 X 1 HETATM 4 N N3 MTX . . . B 2 -26.462 -8.99 40.187 1 17.05 ? N3 MTX 201 X 1 HETATM 5 C C4 MTX . . . B 2 -27.011 -10.217 40.448 1 20.14 ? C4 MTX 201 X 1 HETATM 6 N NA4 MTX . . . B 2 -26.444 -11.31 39.937 1 18.67 ? NA4 MTX 201 X 1 HETATM 7 C C4A MTX . . . B 2 -27.957 -10.318 41.459 1 19.34 ? C4A MTX 201 X 1 HETATM 8 N N5 MTX . . . B 2 -28.519 -11.55 41.701 1 19.59 ? N5 MTX 201 X 1 HETATM 9 C C6 MTX . . . B 2 -29.448 -11.686 42.696 1 20.06 ? C6 MTX 201 X 1 HETATM 10 C C7 MTX . . . B 2 -29.834 -10.574 43.437 1 22.69 ? C7 MTX 201 X 1 HETATM 11 N N8 MTX . . . B 2 -29.278 -9.331 43.192 1 19.88 ? N8 MTX 201 X 1 HETATM 12 C C8A MTX . . . B 2 -28.343 -9.206 42.19 1 18.42 ? C8A MTX 201 X 1 HETATM 13 C C9 MTX . . . B 2 -30.045 -13.071 42.915 1 23.95 ? C9 MTX 201 X 1 HETATM 14 N N10 MTX . . . B 2 -31.369 -12.986 43.521 1 24.04 ? N10 MTX 201 X 1 HETATM 15 C CM MTX . . . B 2 -31.54 -13.525 44.876 1 23.99 ? CM MTX 201 X 1 HETATM 16 C C11 MTX . . . B 2 -34.664 -11.053 41.74 1 33.14 ? C11 MTX 201 X 1 HETATM 17 C C12 MTX . . . B 2 -34.741 -11.52 43.045 1 26.83 ? C12 MTX 201 X 1 HETATM 18 C C13 MTX . . . B 2 -33.653 -12.166 43.624 1 25.16 ? C13 MTX 201 X 1 HETATM 19 C C14 MTX . . . B 2 -32.471 -12.329 42.896 1 25.55 ? C14 MTX 201 X 1 HETATM 20 C C15 MTX . . . B 2 -32.394 -11.848 41.589 1 21.91 ? C15 MTX 201 X 1 HETATM 21 C C16 MTX . . . B 2 -33.451 -11.113 41.055 1 29.11 ? C16 MTX 201 X 1 HETATM 22 C C MTX . . . B 2 -35.85 -10.362 41.13 1 36.14 ? C MTX 201 X 1 HETATM 23 O O MTX . . . B 2 -37.128 -10.56 41.678 1 34.4 ? O MTX 201 X 1 HETATM 24 N N MTX . . . B 2 -35.642 -9.557 40.102 1 31.91 ? N MTX 201 X 1 HETATM 25 C CA MTX . . . B 2 -36.701 -9 39.294 1 37.79 ? CA MTX 201 X 1 HETATM 26 C CT MTX . . . B 2 -36.307 -9.087 37.849 1 41.57 ? CT MTX 201 X 1 HETATM 27 O O1 MTX . . . B 2 -35.118 -9.348 37.533 1 31.74 ? O1 MTX 201 X 1 HETATM 28 O O2 MTX . . . B 2 -37.167 -8.903 36.951 1 40.93 ? O2 MTX 201 X 1 HETATM 29 C CB MTX . . . B 2 -36.967 -7.542 39.66 1 36.55 ? CB MTX 201 X 1 HETATM 30 C CG MTX . . . B 2 -37.647 -7.415 41.02 1 33.1 ? CG MTX 201 X 1 HETATM 31 C CD MTX . . . B 2 -38.129 -5.995 41.202 1 49.11 ? CD MTX 201 X 1 HETATM 32 O OE1 MTX . . . B 2 -38.037 -5.436 42.318 1 52.24 ? OE1 MTX 201 X 1 HETATM 33 O OE2 MTX . . . B 2 -38.621 -5.361 40.242 1 50.89 ? OE2 MTX 201 X 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #