data_6P9Z # _model_server_result.job_id C3POISsTkLnXqreYRe8OXg _model_server_result.datetime_utc '2024-11-18 19:36:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6P9Z # _exptl.entry_id 6P9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6P9Z _cell.length_a 79.033 _cell.length_b 79.033 _cell.length_c 109.093 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 294 n n PA O2A NAP sing 295 n n PA O5B NAP sing 296 n n PA O3 NAP sing 297 n n O2A HOA2 NAP sing 298 n n O5B C5B NAP sing 299 n n C5B C4B NAP sing 300 n n C5B H51A NAP sing 301 n n C5B H52A NAP sing 302 n n C4B O4B NAP sing 303 n n C4B C3B NAP sing 304 n n C4B H4B NAP sing 305 n n O4B C1B NAP sing 306 n n C3B O3B NAP sing 307 n n C3B C2B NAP sing 308 n n C3B H3B NAP sing 309 n n O3B HO3A NAP sing 310 n n C2B O2B NAP sing 311 n n C2B C1B NAP sing 312 n n C2B H2B NAP sing 313 n n O2B P2B NAP sing 314 n n C1B N9A NAP sing 315 n n C1B H1B NAP sing 316 n n N9A C8A NAP sing 317 n y N9A C4A NAP sing 318 n y C8A N7A NAP doub 319 n y C8A H8A NAP sing 320 n n N7A C5A NAP sing 321 n y C5A C6A NAP sing 322 n y C5A C4A NAP doub 323 n y C6A N6A NAP sing 324 n n C6A N1A NAP doub 325 n y N6A H61A NAP sing 326 n n N6A H62A NAP sing 327 n n N1A C2A NAP sing 328 n y C2A N3A NAP doub 329 n y C2A H2A NAP sing 330 n n N3A C4A NAP sing 331 n y O3 PN NAP sing 332 n n PN O1N NAP doub 333 n n PN O2N NAP sing 334 n n PN O5D NAP sing 335 n n O5D C5D NAP sing 336 n n C5D C4D NAP sing 337 n n C5D H51N NAP sing 338 n n C5D H52N NAP sing 339 n n C4D O4D NAP sing 340 n n C4D C3D NAP sing 341 n n C4D H4D NAP sing 342 n n O4D C1D NAP sing 343 n n C3D O3D NAP sing 344 n n C3D C2D NAP sing 345 n n C3D H3D NAP sing 346 n n O3D HO3N NAP sing 347 n n C2D O2D NAP sing 348 n n C2D C1D NAP sing 349 n n C2D H2D NAP sing 350 n n O2D HO2N NAP sing 351 n n C1D N1N NAP sing 352 n n C1D H1D NAP sing 353 n n N1N C2N NAP sing 354 n y N1N C6N NAP doub 355 n y C2N C3N NAP doub 356 n y C2N H2N NAP sing 357 n n C3N C7N NAP sing 358 n n C3N C4N NAP sing 359 n y C7N O7N NAP doub 360 n n C7N N7N NAP sing 361 n n N7N H71N NAP sing 362 n n N7N H72N NAP sing 363 n n C4N C5N NAP doub 364 n y C4N H4N NAP sing 365 n n C5N C6N NAP sing 366 n y C5N H5N NAP sing 367 n n C6N H6N NAP sing 368 n n P2B O1X NAP doub 369 n n P2B O2X NAP sing 370 n n P2B O3X NAP sing 371 n n O2X HOP2 NAP sing 372 n n O3X HOP3 NAP sing 373 n n # _atom_sites.entry_id 6P9Z _atom_sites.fract_transf_matrix[1][1] 0.012653 _atom_sites.fract_transf_matrix[1][2] 0.007305 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX X 1 201 164 MTX MTX . C 3 NAP X 1 202 207 NAP NAP . D 4 GOL X 1 203 221 GOL GOL . E 5 HOH X 1 301 30 HOH HOH . E 5 HOH X 2 302 59 HOH HOH . E 5 HOH X 3 303 43 HOH HOH . E 5 HOH X 4 304 35 HOH HOH . E 5 HOH X 5 305 40 HOH HOH . E 5 HOH X 6 306 11 HOH HOH . E 5 HOH X 7 307 62 HOH HOH . E 5 HOH X 8 308 12 HOH HOH . E 5 HOH X 9 309 38 HOH HOH . E 5 HOH X 10 310 21 HOH HOH . E 5 HOH X 11 311 4 HOH HOH . E 5 HOH X 12 312 45 HOH HOH . E 5 HOH X 13 313 44 HOH HOH . E 5 HOH X 14 314 55 HOH HOH . E 5 HOH X 15 315 36 HOH HOH . E 5 HOH X 16 316 49 HOH HOH . E 5 HOH X 17 317 53 HOH HOH . E 5 HOH X 18 318 46 HOH HOH . E 5 HOH X 19 319 56 HOH HOH . E 5 HOH X 20 320 13 HOH HOH . E 5 HOH X 21 321 5 HOH HOH . E 5 HOH X 22 322 18 HOH HOH . E 5 HOH X 23 323 3 HOH HOH . E 5 HOH X 24 324 48 HOH HOH . E 5 HOH X 25 325 8 HOH HOH . E 5 HOH X 26 326 10 HOH HOH . E 5 HOH X 27 327 57 HOH HOH . E 5 HOH X 28 328 60 HOH HOH . E 5 HOH X 29 329 34 HOH HOH . E 5 HOH X 30 330 61 HOH HOH . E 5 HOH X 31 331 20 HOH HOH . E 5 HOH X 32 332 41 HOH HOH . E 5 HOH X 33 333 47 HOH HOH . E 5 HOH X 34 334 24 HOH HOH . E 5 HOH X 35 335 6 HOH HOH . E 5 HOH X 36 336 51 HOH HOH . E 5 HOH X 37 337 2 HOH HOH . E 5 HOH X 38 338 27 HOH HOH . E 5 HOH X 39 339 14 HOH HOH . E 5 HOH X 40 340 7 HOH HOH . E 5 HOH X 41 341 32 HOH HOH . E 5 HOH X 42 342 31 HOH HOH . E 5 HOH X 43 343 22 HOH HOH . E 5 HOH X 44 344 33 HOH HOH . E 5 HOH X 45 345 29 HOH HOH . E 5 HOH X 46 346 1 HOH HOH . E 5 HOH X 47 347 25 HOH HOH . E 5 HOH X 48 348 39 HOH HOH . E 5 HOH X 49 349 64 HOH HOH . E 5 HOH X 50 350 58 HOH HOH . E 5 HOH X 51 351 9 HOH HOH . E 5 HOH X 52 352 23 HOH HOH . E 5 HOH X 53 353 16 HOH HOH . E 5 HOH X 54 354 63 HOH HOH . E 5 HOH X 55 355 42 HOH HOH . E 5 HOH X 56 356 50 HOH HOH . E 5 HOH X 57 357 15 HOH HOH . E 5 HOH X 58 358 52 HOH HOH . E 5 HOH X 59 359 54 HOH HOH . E 5 HOH X 60 360 19 HOH HOH . E 5 HOH X 61 361 28 HOH HOH . E 5 HOH X 62 362 26 HOH HOH . E 5 HOH X 63 363 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 -24.034 -21.408 43.02 1 19.03 ? PA NAP 202 X 1 HETATM 2 O O1A NAP . . . C 3 -22.832 -21.012 42.265 1 19.32 ? O1A NAP 202 X 1 HETATM 3 O O2A NAP . . . C 3 -25.242 -20.566 42.893 1 20.1 ? O2A NAP 202 X 1 HETATM 4 O O5B NAP . . . C 3 -24.408 -22.946 42.692 1 20.16 ? O5B NAP 202 X 1 HETATM 5 C C5B NAP . . . C 3 -23.412 -23.938 42.864 1 19.91 ? C5B NAP 202 X 1 HETATM 6 C C4B NAP . . . C 3 -23.879 -25.164 42.098 1 18.83 ? C4B NAP 202 X 1 HETATM 7 O O4B NAP . . . C 3 -23.826 -24.884 40.716 1 19.95 ? O4B NAP 202 X 1 HETATM 8 C C3B NAP . . . C 3 -23.007 -26.4 42.261 1 24.42 ? C3B NAP 202 X 1 HETATM 9 O O3B NAP . . . C 3 -23.285 -27.095 43.464 1 17.71 ? O3B NAP 202 X 1 HETATM 10 C C2B NAP . . . C 3 -23.416 -27.169 41.013 1 21.72 ? C2B NAP 202 X 1 HETATM 11 O O2B NAP . . . C 3 -24.727 -27.667 41.145 1 23.24 ? O2B NAP 202 X 1 HETATM 12 C C1B NAP . . . C 3 -23.551 -26.059 39.991 1 19.67 ? C1B NAP 202 X 1 HETATM 13 N N9A NAP . . . C 3 -22.297 -25.93 39.253 1 22.97 ? N9A NAP 202 X 1 HETATM 14 C C8A NAP . . . C 3 -21.355 -24.924 39.367 1 23.29 ? C8A NAP 202 X 1 HETATM 15 N N7A NAP . . . C 3 -20.358 -25.181 38.49 1 29.92 ? N7A NAP 202 X 1 HETATM 16 C C5A NAP . . . C 3 -20.659 -26.328 37.826 1 27.38 ? C5A NAP 202 X 1 HETATM 17 C C6A NAP . . . C 3 -20.013 -27.035 36.827 1 29.23 ? C6A NAP 202 X 1 HETATM 18 N N6A NAP . . . C 3 -18.85 -26.616 36.351 1 27.56 ? N6A NAP 202 X 1 HETATM 19 N N1A NAP . . . C 3 -20.584 -28.188 36.327 1 28.51 ? N1A NAP 202 X 1 HETATM 20 C C2A NAP . . . C 3 -21.795 -28.626 36.811 1 24.96 ? C2A NAP 202 X 1 HETATM 21 N N3A NAP . . . C 3 -22.442 -27.933 37.802 1 27.71 ? N3A NAP 202 X 1 HETATM 22 C C4A NAP . . . C 3 -21.88 -26.799 38.296 1 26.27 ? C4A NAP 202 X 1 HETATM 23 O O3 NAP . . . C 3 -23.61 -21.589 44.565 1 18.2 ? O3 NAP 202 X 1 HETATM 24 P PN NAP . . . C 3 -22.639 -20.819 45.596 1 21.65 ? PN NAP 202 X 1 HETATM 25 O O1N NAP . . . C 3 -22.891 -21.432 46.917 1 20.1 ? O1N NAP 202 X 1 HETATM 26 O O2N NAP . . . C 3 -21.288 -20.774 45.045 1 21.4 ? O2N NAP 202 X 1 HETATM 27 O O5D NAP . . . C 3 -23.268 -19.327 45.654 1 21.12 ? O5D NAP 202 X 1 HETATM 28 C C5D NAP . . . C 3 -24.556 -19.1 46.21 1 15.24 ? C5D NAP 202 X 1 HETATM 29 C C4D NAP . . . C 3 -24.581 -17.781 46.983 1 22.26 ? C4D NAP 202 X 1 HETATM 30 O O4D NAP . . . C 3 -24.409 -16.66 46.103 1 18.17 ? O4D NAP 202 X 1 HETATM 31 C C3D NAP . . . C 3 -25.914 -17.566 47.679 1 17.7 ? C3D NAP 202 X 1 HETATM 32 O O3D NAP . . . C 3 -25.687 -16.997 48.971 1 17.39 ? O3D NAP 202 X 1 HETATM 33 C C2D NAP . . . C 3 -26.625 -16.542 46.821 1 18.4 ? C2D NAP 202 X 1 HETATM 34 O O2D NAP . . . C 3 -27.451 -15.755 47.632 1 18.82 ? O2D NAP 202 X 1 HETATM 35 C C1D NAP . . . C 3 -25.451 -15.713 46.341 1 17.56 ? C1D NAP 202 X 1 HETATM 36 N N1N NAP . . . C 3 -25.658 -14.886 45.123 1 22.41 ? N1N NAP 202 X 1 HETATM 37 C C2N NAP . . . C 3 -25.357 -13.552 45.194 1 22.65 ? C2N NAP 202 X 1 HETATM 38 C C3N NAP . . . C 3 -25.486 -12.744 44.074 1 19.35 ? C3N NAP 202 X 1 HETATM 39 C C7N NAP . . . C 3 -25.136 -11.295 44.177 1 15.43 ? C7N NAP 202 X 1 HETATM 40 O O7N NAP . . . C 3 -24.947 -10.606 42.99 1 19.35 ? O7N NAP 202 X 1 HETATM 41 N N7N NAP . . . C 3 -25.022 -10.709 45.37 1 18.74 ? N7N NAP 202 X 1 HETATM 42 C C4N NAP . . . C 3 -25.899 -13.287 42.853 1 23.96 ? C4N NAP 202 X 1 HETATM 43 C C5N NAP . . . C 3 -26.2 -14.652 42.793 1 22.45 ? C5N NAP 202 X 1 HETATM 44 C C6N NAP . . . C 3 -26.062 -15.433 43.937 1 21.6 ? C6N NAP 202 X 1 HETATM 45 P P2B NAP . . . C 3 -25.03 -29.2 41.595 1 20.6 ? P2B NAP 202 X 1 HETATM 46 O O1X NAP . . . C 3 -24.493 -29.328 43 1 19.4 ? O1X NAP 202 X 1 HETATM 47 O O2X NAP . . . C 3 -26.536 -29.343 41.564 1 19.34 ? O2X NAP 202 X 1 HETATM 48 O O3X NAP . . . C 3 -24.286 -30.099 40.644 1 22.02 ? O3X NAP 202 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #