data_6P9Z
#
_model_server_result.job_id            EYQQaHY6OnZxsy5bK-I2iw 
_model_server_result.datetime_utc      '2024-11-18 19:41:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p9z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    6P9Z 
#
_exptl.entry_id    6P9Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6P9Z 
_cell.length_a            79.033 
_cell.length_b            79.033 
_cell.length_c            109.093 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P9Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     6P9Z 
_atom_sites.fract_transf_matrix[1][1]    0.012653 
_atom_sites.fract_transf_matrix[1][2]    0.007305 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01461 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTX X 1 201 164 MTX MTX . 
C 3 NAP X 1 202 207 NAP NAP . 
D 4 GOL X 1 203 221 GOL GOL . 
E 5 HOH X 1 301 30 HOH HOH . 
E 5 HOH X 2 302 59 HOH HOH . 
E 5 HOH X 3 303 43 HOH HOH . 
E 5 HOH X 4 304 35 HOH HOH . 
E 5 HOH X 5 305 40 HOH HOH . 
E 5 HOH X 6 306 11 HOH HOH . 
E 5 HOH X 7 307 62 HOH HOH . 
E 5 HOH X 8 308 12 HOH HOH . 
E 5 HOH X 9 309 38 HOH HOH . 
E 5 HOH X 10 310 21 HOH HOH . 
E 5 HOH X 11 311 4 HOH HOH . 
E 5 HOH X 12 312 45 HOH HOH . 
E 5 HOH X 13 313 44 HOH HOH . 
E 5 HOH X 14 314 55 HOH HOH . 
E 5 HOH X 15 315 36 HOH HOH . 
E 5 HOH X 16 316 49 HOH HOH . 
E 5 HOH X 17 317 53 HOH HOH . 
E 5 HOH X 18 318 46 HOH HOH . 
E 5 HOH X 19 319 56 HOH HOH . 
E 5 HOH X 20 320 13 HOH HOH . 
E 5 HOH X 21 321 5 HOH HOH . 
E 5 HOH X 22 322 18 HOH HOH . 
E 5 HOH X 23 323 3 HOH HOH . 
E 5 HOH X 24 324 48 HOH HOH . 
E 5 HOH X 25 325 8 HOH HOH . 
E 5 HOH X 26 326 10 HOH HOH . 
E 5 HOH X 27 327 57 HOH HOH . 
E 5 HOH X 28 328 60 HOH HOH . 
E 5 HOH X 29 329 34 HOH HOH . 
E 5 HOH X 30 330 61 HOH HOH . 
E 5 HOH X 31 331 20 HOH HOH . 
E 5 HOH X 32 332 41 HOH HOH . 
E 5 HOH X 33 333 47 HOH HOH . 
E 5 HOH X 34 334 24 HOH HOH . 
E 5 HOH X 35 335 6 HOH HOH . 
E 5 HOH X 36 336 51 HOH HOH . 
E 5 HOH X 37 337 2 HOH HOH . 
E 5 HOH X 38 338 27 HOH HOH . 
E 5 HOH X 39 339 14 HOH HOH . 
E 5 HOH X 40 340 7 HOH HOH . 
E 5 HOH X 41 341 32 HOH HOH . 
E 5 HOH X 42 342 31 HOH HOH . 
E 5 HOH X 43 343 22 HOH HOH . 
E 5 HOH X 44 344 33 HOH HOH . 
E 5 HOH X 45 345 29 HOH HOH . 
E 5 HOH X 46 346 1 HOH HOH . 
E 5 HOH X 47 347 25 HOH HOH . 
E 5 HOH X 48 348 39 HOH HOH . 
E 5 HOH X 49 349 64 HOH HOH . 
E 5 HOH X 50 350 58 HOH HOH . 
E 5 HOH X 51 351 9 HOH HOH . 
E 5 HOH X 52 352 23 HOH HOH . 
E 5 HOH X 53 353 16 HOH HOH . 
E 5 HOH X 54 354 63 HOH HOH . 
E 5 HOH X 55 355 42 HOH HOH . 
E 5 HOH X 56 356 50 HOH HOH . 
E 5 HOH X 57 357 15 HOH HOH . 
E 5 HOH X 58 358 52 HOH HOH . 
E 5 HOH X 59 359 54 HOH HOH . 
E 5 HOH X 60 360 19 HOH HOH . 
E 5 HOH X 61 361 28 HOH HOH . 
E 5 HOH X 62 362 26 HOH HOH . 
E 5 HOH X 63 363 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -11.679 -6.022 46.731 1 40.73 ? C1 GOL 203 X 1 
HETATM 2 O O1 GOL . . . D 4 -12.798 -5.181 46.934 1 59.52 ? O1 GOL 203 X 1 
HETATM 3 C C2 GOL . . . D 4 -11.675 -6.386 45.253 1 44.59 ? C2 GOL 203 X 1 
HETATM 4 O O2 GOL . . . D 4 -10.501 -7.072 44.855 1 36.66 ? O2 GOL 203 X 1 
HETATM 5 C C3 GOL . . . D 4 -12.091 -5.182 44.412 1 39.86 ? C3 GOL 203 X 1 
HETATM 6 O O3 GOL . . . D 4 -11.07 -4.832 43.505 1 56.14 ? O3 GOL 203 X 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#