data_6PA0 # _model_server_result.job_id 0A7ha_VDPKgY8bx4I1dB5g _model_server_result.datetime_utc '2024-11-08 13:37:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pa0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 6PA0 # _exptl.entry_id 6PA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PA0 _cell.length_a 155.018 _cell.length_b 155.018 _cell.length_c 76.102 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? disulf ? disulf3 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc1 C OG1 THR 54 C THR 75 1_555 F NA NA . C NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc2 C OG1 THR 54 C THR 75 1_555 F NA NA . C NA 302 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc3 F NA NA . C NA 302 1_555 I O HOH . C HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc4 F NA NA . C NA 302 1_555 I O HOH . C HOH 414 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc5 F NA NA . C NA 302 1_555 I O HOH . C HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc6 F NA NA . C NA 302 1_555 I O HOH . C HOH 430 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PA0 _atom_sites.fract_transf_matrix[1][1] 0.006451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 F09 A 1 301 201 F09 F09 . E 5 DGA C 1 301 301 DGA DGA . F 6 NA C 1 302 1 NA NA . G 7 HOH A 1 401 223 HOH HOH . G 7 HOH A 2 402 160 HOH HOH . G 7 HOH A 3 403 26 HOH HOH . G 7 HOH A 4 404 135 HOH HOH . G 7 HOH A 5 405 192 HOH HOH . G 7 HOH A 6 406 204 HOH HOH . G 7 HOH A 7 407 86 HOH HOH . G 7 HOH A 8 408 85 HOH HOH . G 7 HOH A 9 409 186 HOH HOH . G 7 HOH A 10 410 37 HOH HOH . G 7 HOH A 11 411 137 HOH HOH . G 7 HOH A 12 412 149 HOH HOH . G 7 HOH A 13 413 95 HOH HOH . G 7 HOH A 14 414 32 HOH HOH . G 7 HOH A 15 415 177 HOH HOH . G 7 HOH A 16 416 145 HOH HOH . G 7 HOH A 17 417 228 HOH HOH . G 7 HOH A 18 418 75 HOH HOH . G 7 HOH A 19 419 120 HOH HOH . G 7 HOH A 20 420 102 HOH HOH . G 7 HOH A 21 421 61 HOH HOH . G 7 HOH A 22 422 45 HOH HOH . G 7 HOH A 23 423 31 HOH HOH . G 7 HOH A 24 424 12 HOH HOH . G 7 HOH A 25 425 107 HOH HOH . G 7 HOH A 26 426 125 HOH HOH . G 7 HOH A 27 427 217 HOH HOH . G 7 HOH A 28 428 34 HOH HOH . G 7 HOH A 29 429 14 HOH HOH . G 7 HOH A 30 430 44 HOH HOH . G 7 HOH A 31 431 16 HOH HOH . G 7 HOH A 32 432 47 HOH HOH . G 7 HOH A 33 433 96 HOH HOH . G 7 HOH A 34 434 2 HOH HOH . G 7 HOH A 35 435 58 HOH HOH . G 7 HOH A 36 436 46 HOH HOH . G 7 HOH A 37 437 105 HOH HOH . G 7 HOH A 38 438 36 HOH HOH . G 7 HOH A 39 439 41 HOH HOH . G 7 HOH A 40 440 64 HOH HOH . G 7 HOH A 41 441 54 HOH HOH . G 7 HOH A 42 442 132 HOH HOH . G 7 HOH A 43 443 98 HOH HOH . G 7 HOH A 44 444 133 HOH HOH . G 7 HOH A 45 445 67 HOH HOH . G 7 HOH A 46 446 134 HOH HOH . G 7 HOH A 47 447 78 HOH HOH . G 7 HOH A 48 448 84 HOH HOH . G 7 HOH A 49 449 150 HOH HOH . G 7 HOH A 50 450 79 HOH HOH . G 7 HOH A 51 451 193 HOH HOH . G 7 HOH A 52 452 142 HOH HOH . G 7 HOH A 53 453 110 HOH HOH . G 7 HOH A 54 454 43 HOH HOH . G 7 HOH A 55 455 72 HOH HOH . G 7 HOH A 56 456 27 HOH HOH . G 7 HOH A 57 457 62 HOH HOH . G 7 HOH A 58 458 112 HOH HOH . G 7 HOH A 59 459 124 HOH HOH . G 7 HOH A 60 460 55 HOH HOH . G 7 HOH A 61 461 82 HOH HOH . G 7 HOH A 62 462 180 HOH HOH . G 7 HOH A 63 463 88 HOH HOH . G 7 HOH A 64 464 216 HOH HOH . G 7 HOH A 65 465 131 HOH HOH . G 7 HOH A 66 466 42 HOH HOH . G 7 HOH A 67 467 170 HOH HOH . G 7 HOH A 68 468 89 HOH HOH . G 7 HOH A 69 469 52 HOH HOH . G 7 HOH A 70 470 108 HOH HOH . G 7 HOH A 71 471 111 HOH HOH . G 7 HOH A 72 472 103 HOH HOH . G 7 HOH A 73 473 115 HOH HOH . G 7 HOH A 74 474 200 HOH HOH . G 7 HOH A 75 475 113 HOH HOH . G 7 HOH A 76 476 148 HOH HOH . G 7 HOH A 77 477 199 HOH HOH . G 7 HOH A 78 478 221 HOH HOH . G 7 HOH A 79 479 19 HOH HOH . G 7 HOH A 80 480 165 HOH HOH . G 7 HOH A 81 481 197 HOH HOH . G 7 HOH A 82 482 138 HOH HOH . G 7 HOH A 83 483 182 HOH HOH . G 7 HOH A 84 484 121 HOH HOH . G 7 HOH A 85 485 153 HOH HOH . G 7 HOH A 86 486 151 HOH HOH . G 7 HOH A 87 487 227 HOH HOH . G 7 HOH A 88 488 194 HOH HOH . G 7 HOH A 89 489 224 HOH HOH . G 7 HOH A 90 490 147 HOH HOH . G 7 HOH A 91 491 220 HOH HOH . G 7 HOH A 92 492 128 HOH HOH . G 7 HOH A 93 493 229 HOH HOH . G 7 HOH A 94 494 57 HOH HOH . G 7 HOH A 95 495 156 HOH HOH . G 7 HOH A 96 496 218 HOH HOH . H 7 HOH B 1 301 91 HOH HOH . H 7 HOH B 2 302 168 HOH HOH . H 7 HOH B 3 303 74 HOH HOH . H 7 HOH B 4 304 94 HOH HOH . H 7 HOH B 5 305 213 HOH HOH . H 7 HOH B 6 306 141 HOH HOH . H 7 HOH B 7 307 68 HOH HOH . H 7 HOH B 8 308 90 HOH HOH . H 7 HOH B 9 309 191 HOH HOH . H 7 HOH B 10 310 114 HOH HOH . H 7 HOH B 11 311 50 HOH HOH . H 7 HOH B 12 312 222 HOH HOH . H 7 HOH B 13 313 219 HOH HOH . H 7 HOH B 14 314 49 HOH HOH . H 7 HOH B 15 315 40 HOH HOH . H 7 HOH B 16 316 28 HOH HOH . H 7 HOH B 17 317 10 HOH HOH . H 7 HOH B 18 318 21 HOH HOH . H 7 HOH B 19 319 122 HOH HOH . H 7 HOH B 20 320 8 HOH HOH . H 7 HOH B 21 321 25 HOH HOH . H 7 HOH B 22 322 80 HOH HOH . H 7 HOH B 23 323 17 HOH HOH . H 7 HOH B 24 324 181 HOH HOH . H 7 HOH B 25 325 53 HOH HOH . H 7 HOH B 26 326 119 HOH HOH . H 7 HOH B 27 327 13 HOH HOH . H 7 HOH B 28 328 66 HOH HOH . H 7 HOH B 29 329 9 HOH HOH . H 7 HOH B 30 330 123 HOH HOH . H 7 HOH B 31 331 24 HOH HOH . H 7 HOH B 32 332 29 HOH HOH . H 7 HOH B 33 333 60 HOH HOH . H 7 HOH B 34 334 38 HOH HOH . H 7 HOH B 35 335 11 HOH HOH . H 7 HOH B 36 336 35 HOH HOH . H 7 HOH B 37 337 63 HOH HOH . H 7 HOH B 38 338 83 HOH HOH . H 7 HOH B 39 339 77 HOH HOH . H 7 HOH B 40 340 7 HOH HOH . H 7 HOH B 41 341 56 HOH HOH . H 7 HOH B 42 342 23 HOH HOH . H 7 HOH B 43 343 189 HOH HOH . H 7 HOH B 44 344 76 HOH HOH . H 7 HOH B 45 345 101 HOH HOH . H 7 HOH B 46 346 69 HOH HOH . H 7 HOH B 47 347 161 HOH HOH . H 7 HOH B 48 348 201 HOH HOH . H 7 HOH B 49 349 139 HOH HOH . H 7 HOH B 50 350 22 HOH HOH . H 7 HOH B 51 351 18 HOH HOH . H 7 HOH B 52 352 5 HOH HOH . H 7 HOH B 53 353 3 HOH HOH . H 7 HOH B 54 354 187 HOH HOH . H 7 HOH B 55 355 81 HOH HOH . H 7 HOH B 56 356 92 HOH HOH . H 7 HOH B 57 357 130 HOH HOH . H 7 HOH B 58 358 65 HOH HOH . H 7 HOH B 59 359 109 HOH HOH . H 7 HOH B 60 360 51 HOH HOH . H 7 HOH B 61 361 136 HOH HOH . H 7 HOH B 62 362 166 HOH HOH . H 7 HOH B 63 363 116 HOH HOH . H 7 HOH B 64 364 73 HOH HOH . H 7 HOH B 65 365 118 HOH HOH . H 7 HOH B 66 366 93 HOH HOH . H 7 HOH B 67 367 143 HOH HOH . H 7 HOH B 68 368 140 HOH HOH . H 7 HOH B 69 369 214 HOH HOH . H 7 HOH B 70 370 163 HOH HOH . H 7 HOH B 71 371 104 HOH HOH . H 7 HOH B 72 372 117 HOH HOH . H 7 HOH B 73 373 70 HOH HOH . H 7 HOH B 74 374 87 HOH HOH . H 7 HOH B 75 375 99 HOH HOH . H 7 HOH B 76 376 225 HOH HOH . H 7 HOH B 77 377 211 HOH HOH . H 7 HOH B 78 378 158 HOH HOH . H 7 HOH B 79 379 154 HOH HOH . H 7 HOH B 80 380 155 HOH HOH . H 7 HOH B 81 381 100 HOH HOH . H 7 HOH B 82 382 184 HOH HOH . H 7 HOH B 83 383 206 HOH HOH . H 7 HOH B 84 384 171 HOH HOH . H 7 HOH B 85 385 162 HOH HOH . H 7 HOH B 86 386 195 HOH HOH . H 7 HOH B 87 387 202 HOH HOH . H 7 HOH B 88 388 169 HOH HOH . H 7 HOH B 89 389 198 HOH HOH . H 7 HOH B 90 390 152 HOH HOH . H 7 HOH B 91 391 164 HOH HOH . H 7 HOH B 92 392 208 HOH HOH . H 7 HOH B 93 393 226 HOH HOH . H 7 HOH B 94 394 126 HOH HOH . H 7 HOH B 95 395 129 HOH HOH . I 7 HOH C 1 401 71 HOH HOH . I 7 HOH C 2 402 203 HOH HOH . I 7 HOH C 3 403 167 HOH HOH . I 7 HOH C 4 404 4 HOH HOH . I 7 HOH C 5 405 6 HOH HOH . I 7 HOH C 6 406 210 HOH HOH . I 7 HOH C 7 407 15 HOH HOH . I 7 HOH C 8 408 30 HOH HOH . I 7 HOH C 9 409 209 HOH HOH . I 7 HOH C 10 410 33 HOH HOH . I 7 HOH C 11 411 146 HOH HOH . I 7 HOH C 12 412 173 HOH HOH . I 7 HOH C 13 413 20 HOH HOH . I 7 HOH C 14 414 1 HOH HOH . I 7 HOH C 15 415 144 HOH HOH . I 7 HOH C 16 416 205 HOH HOH . I 7 HOH C 17 417 106 HOH HOH . I 7 HOH C 18 418 48 HOH HOH . I 7 HOH C 19 419 39 HOH HOH . I 7 HOH C 20 420 190 HOH HOH . I 7 HOH C 21 421 172 HOH HOH . I 7 HOH C 22 422 97 HOH HOH . I 7 HOH C 23 423 157 HOH HOH . I 7 HOH C 24 424 212 HOH HOH . I 7 HOH C 25 425 176 HOH HOH . I 7 HOH C 26 426 159 HOH HOH . I 7 HOH C 27 427 175 HOH HOH . I 7 HOH C 28 428 59 HOH HOH . I 7 HOH C 29 429 188 HOH HOH . I 7 HOH C 30 430 174 HOH HOH . I 7 HOH C 31 431 127 HOH HOH . I 7 HOH C 32 432 215 HOH HOH . I 7 HOH C 33 433 178 HOH HOH . I 7 HOH C 34 434 207 HOH HOH . I 7 HOH C 35 435 196 HOH HOH . I 7 HOH C 36 436 183 HOH HOH . I 7 HOH C 37 437 179 HOH HOH . I 7 HOH C 38 438 185 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 0 _atom_site.Cartn_y 0 _atom_site.Cartn_z -1.313 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 41.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #