data_6PAD # _model_server_result.job_id 5JyjDuiJAY7fQfyWzoiMDg _model_server_result.datetime_utc '2024-11-29 01:10:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":213}' # _entry.id 6PAD # _exptl.entry_id 6PAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.871 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Nalpha-[(benzyloxy)carbonyl]-N-[(1S)-3-chloro-1-methyl-2-oxopropyl]-L-phenylalaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PAD _cell.length_a 45 _cell.length_b 104.3 _cell.length_c 50.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.694 ? disulf ? disulf3 A SG CYS 153 A CYS 153 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B CM 0PC . A 0PC 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.697 ? # _chem_comp.formula 'C21 H23 Cl N2 O4' _chem_comp.formula_weight 402.871 _chem_comp.id 0PC _chem_comp.mon_nstd_flag . _chem_comp.name Nalpha-[(benzyloxy)carbonyl]-N-[(1S)-3-chloro-1-methyl-2-oxopropyl]-L-phenylalaninamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ZPACK # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 0PC doub 1 n n C1 O2 0PC sing 2 n n C1 N 0PC sing 3 n n O2 C2 0PC sing 4 n n C2 C3 0PC sing 5 n n C2 H21 0PC sing 6 n n C2 H22 0PC sing 7 n n C3 C4 0PC doub 8 n y C3 C8 0PC sing 9 n y C4 C5 0PC sing 10 n y C4 H41 0PC sing 11 n n C5 C6 0PC doub 12 n y C5 H51 0PC sing 13 n n C6 C7 0PC sing 14 n y C6 H61 0PC sing 15 n n C7 C8 0PC doub 16 n y C7 H71 0PC sing 17 n n C8 H81 0PC sing 18 n n N CA 0PC sing 19 n n N H 0PC sing 20 n n CA C 0PC sing 21 n n CA CB 0PC sing 22 n n CA HA 0PC sing 23 n n C O 0PC doub 24 n n C N1 0PC sing 25 n n CB CG 0PC sing 26 n n CB HB2 0PC sing 27 n n CB HB3 0PC sing 28 n n CG CD1 0PC doub 29 n y CG CD2 0PC sing 30 n y CD1 CE1 0PC sing 31 n y CD1 HD1 0PC sing 32 n n CD2 CE2 0PC doub 33 n y CD2 HD2 0PC sing 34 n n CE1 CZ 0PC doub 35 n y CE1 HE1 0PC sing 36 n n CE2 CZ 0PC sing 37 n y CE2 HE2 0PC sing 38 n n CZ HZ 0PC sing 39 n n N1 CA1 0PC sing 40 n n N1 H1 0PC sing 41 n n CA1 C9 0PC sing 42 n n CA1 CB1 0PC sing 43 n n CA1 HA1 0PC sing 44 n n C9 O3 0PC doub 45 n n C9 CM 0PC sing 46 n n CB1 HB1 0PC sing 47 n n CB1 HB21 0PC sing 48 n n CB1 HB31 0PC sing 49 n n CM HM1 0PC sing 50 n n CM CL1 0PC sing 51 n n CM HM2 0PC sing 52 n n # _atom_sites.entry_id 6PAD _atom_sites.fract_transf_matrix[1][1] 0.022222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0PC A 1 213 1 0PC BZO . C 3 HOH A 1 214 2 HOH HOH . C 3 HOH A 2 215 3 HOH HOH . C 3 HOH A 3 216 4 HOH HOH . C 3 HOH A 4 217 5 HOH HOH . C 3 HOH A 5 218 6 HOH HOH . C 3 HOH A 6 219 7 HOH HOH . C 3 HOH A 7 220 8 HOH HOH . C 3 HOH A 8 221 9 HOH HOH . C 3 HOH A 9 222 10 HOH HOH . C 3 HOH A 10 223 11 HOH HOH . C 3 HOH A 11 224 12 HOH HOH . C 3 HOH A 12 225 13 HOH HOH . C 3 HOH A 13 226 14 HOH HOH . C 3 HOH A 14 227 15 HOH HOH . C 3 HOH A 15 228 16 HOH HOH . C 3 HOH A 16 229 17 HOH HOH . C 3 HOH A 17 230 18 HOH HOH . C 3 HOH A 18 231 19 HOH HOH . C 3 HOH A 19 232 20 HOH HOH . C 3 HOH A 20 233 21 HOH HOH . C 3 HOH A 21 234 22 HOH HOH . C 3 HOH A 22 235 23 HOH HOH . C 3 HOH A 23 236 24 HOH HOH . C 3 HOH A 24 237 25 HOH HOH . C 3 HOH A 25 238 26 HOH HOH . C 3 HOH A 26 239 27 HOH HOH . C 3 HOH A 27 240 28 HOH HOH . C 3 HOH A 28 241 29 HOH HOH . C 3 HOH A 29 242 30 HOH HOH . C 3 HOH A 30 243 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0PC . . . B 2 20.171 70.506 21.678 1 0 ? C1 0PC 213 A 1 HETATM 2 O O1 0PC . . . B 2 20.076 69.659 22.631 1 0 ? O1 0PC 213 A 1 HETATM 3 O O2 0PC . . . B 2 19.157 71.439 21.414 1 0 ? O2 0PC 213 A 1 HETATM 4 C C2 0PC . . . B 2 17.971 70.668 21.307 1 0 ? C2 0PC 213 A 1 HETATM 5 C C3 0PC . . . B 2 16.904 71.056 22.446 1 0 ? C3 0PC 213 A 1 HETATM 6 C C4 0PC . . . B 2 15.56 70.733 22.285 1 0 ? C4 0PC 213 A 1 HETATM 7 C C5 0PC . . . B 2 14.645 71.122 23.274 1 0 ? C5 0PC 213 A 1 HETATM 8 C C6 0PC . . . B 2 15.124 71.736 24.425 1 0 ? C6 0PC 213 A 1 HETATM 9 C C7 0PC . . . B 2 16.417 72.058 24.586 1 0 ? C7 0PC 213 A 1 HETATM 10 C C8 0PC . . . B 2 17.332 71.718 23.596 1 0 ? C8 0PC 213 A 1 HETATM 11 N N 0PC . . . B 2 21.229 70.421 20.938 1 0 ? N 0PC 213 A 1 HETATM 12 C CA 0PC . . . B 2 22.44 69.741 21.052 1 0 ? CA 0PC 213 A 1 HETATM 13 C C 0PC . . . B 2 23.367 70.661 21.807 1 0 ? C 0PC 213 A 1 HETATM 14 O O 0PC . . . B 2 23.556 71.711 21.154 1 0 ? O 0PC 213 A 1 HETATM 15 C CB 0PC . . . B 2 23.01 69.294 19.609 1 0 ? CB 0PC 213 A 1 HETATM 16 C CG 0PC . . . B 2 22.438 67.932 19.11 1 0 ? CG 0PC 213 A 1 HETATM 17 C CD1 0PC . . . B 2 22.801 66.791 19.769 1 0 ? CD1 0PC 213 A 1 HETATM 18 C CD2 0PC . . . B 2 21.497 67.912 18.102 1 0 ? CD2 0PC 213 A 1 HETATM 19 C CE1 0PC . . . B 2 22.326 65.531 19.32 1 0 ? CE1 0PC 213 A 1 HETATM 20 C CE2 0PC . . . B 2 20.971 66.701 17.653 1 0 ? CE2 0PC 213 A 1 HETATM 21 C CZ 0PC . . . B 2 21.335 65.51 18.311 1 0 ? CZ 0PC 213 A 1 HETATM 22 N N1 0PC . . . B 2 23.809 70.474 23.061 1 0 ? N1 0PC 213 A 1 HETATM 23 C CA1 0PC . . . B 2 24.587 71.44 23.715 1 0 ? CA1 0PC 213 A 1 HETATM 24 C C9 0PC . . . B 2 26.093 71.263 23.429 1 0 ? C9 0PC 213 A 1 HETATM 25 O O3 0PC . . . B 2 26.774 72.227 23.731 1 0 ? O3 0PC 213 A 1 HETATM 26 C CB1 0PC . . . B 2 24.477 71.195 25.215 1 0 ? CB1 0PC 213 A 1 HETATM 27 C CM 0PC . . . B 2 26.821 70.072 22.591 1 0 ? CM 0PC 213 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #