data_6PAR # _model_server_result.job_id 4h0KcfQy9FHFOJhc546obQ _model_server_result.datetime_utc '2024-10-25 20:19:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6par # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":701}' # _entry.id 6PAR # _exptl.entry_id 6PAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.34 _cell.angle_gamma 90 _cell.entry_id 6PAR _cell.length_a 169.648 _cell.length_b 92.498 _cell.length_c 237.691 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J 1 1 C,D,K,L,M,N 2 1 E,F,O,P,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 401 A SER 401 1_555 H MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc2 A OE1 GLN 442 A GLN 442 1_555 H MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 G N3B ANP . A ANP 701 1_555 H MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 B OG SER 401 B SER 401 1_555 J MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc5 B OE1 GLN 442 B GLN 442 1_555 J MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc6 I O1G ANP . B ANP 701 1_555 J MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc7 I O1B ANP . B ANP 701 1_555 J MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc8 C OG SER 401 C SER 401 1_555 L MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc9 K O1B ANP . C ANP 701 1_555 L MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc10 K N3B ANP . C ANP 701 1_555 L MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc11 D OG SER 401 D SER 401 1_555 N MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc12 D OE1 GLN 442 D GLN 442 1_555 N MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc13 D NE2 GLN 442 D GLN 442 1_555 N MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc14 M O2G ANP . D ANP 701 1_555 N MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc15 M O2B ANP . D ANP 701 1_555 N MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc16 E OG SER 401 E SER 401 1_555 P MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc17 E OE1 GLN 442 E GLN 442 1_555 P MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc18 O N3B ANP . E ANP 701 1_555 P MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc19 F OG SER 401 F SER 401 1_555 R MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc20 F OE1 GLN 442 F GLN 442 1_555 R MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc21 F NE2 GLN 442 F GLN 442 1_555 R MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc22 Q O1G ANP . F ANP 701 1_555 R MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc23 Q O2G ANP . F ANP 701 1_555 R MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc24 Q O1B ANP . F ANP 701 1_555 R MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6PAR _atom_sites.fract_transf_matrix[1][1] 0.005895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002185 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP A 1 701 701 ANP ANP . H 3 MG A 1 702 702 MG MG . I 2 ANP B 1 701 701 ANP ANP . J 3 MG B 1 702 702 MG MG . K 2 ANP C 1 701 701 ANP ANP . L 3 MG C 1 702 702 MG MG . M 2 ANP D 1 701 701 ANP ANP . N 3 MG D 1 702 702 MG MG . O 2 ANP E 1 701 701 ANP ANP . P 3 MG E 1 702 702 MG MG . Q 2 ANP F 1 701 701 ANP ANP . R 3 MG F 1 702 702 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . O 2 -78.707 -27.866 74.067 1 114.81 ? PG ANP 701 E 1 HETATM 2 O O1G ANP . . . O 2 -77.377 -28.474 73.758 1 86.41 ? O1G ANP 701 E 1 HETATM 3 O O2G ANP . . . O 2 -79.68 -29.011 74.547 1 109.06 ? O2G ANP 701 E 1 HETATM 4 O O3G ANP . . . O 2 -78.532 -26.823 75.241 1 90.29 ? O3G ANP 701 E 1 HETATM 5 P PB ANP . . . O 2 -80.256 -25.786 72.971 1 104.56 ? PB ANP 701 E 1 HETATM 6 O O1B ANP . . . O 2 -81.464 -26.177 73.747 1 120.86 ? O1B ANP 701 E 1 HETATM 7 O O2B ANP . . . O 2 -79.459 -24.769 73.836 1 114.8 ? O2B ANP 701 E 1 HETATM 8 N N3B ANP . . . O 2 -79.286 -27.121 72.654 1 108.56 ? N3B ANP 701 E 1 HETATM 9 P PA ANP . . . O 2 -80.616 -25.895 70.255 1 113.65 ? PA ANP 701 E 1 HETATM 10 O O1A ANP . . . O 2 -79.524 -26.899 70.25 1 112.63 ? O1A ANP 701 E 1 HETATM 11 O O2A ANP . . . O 2 -80.494 -24.826 69.179 1 122.58 ? O2A ANP 701 E 1 HETATM 12 O O3A ANP . . . O 2 -80.707 -25.113 71.637 1 111.9 ? O3A ANP 701 E 1 HETATM 13 O O5' ANP . . . O 2 -81.958 -26.647 69.955 1 117.1 ? O5' ANP 701 E 1 HETATM 14 C C5' ANP . . . O 2 -82.218 -27.903 70.547 1 132.17 ? C5' ANP 701 E 1 HETATM 15 C C4' ANP . . . O 2 -83.419 -28.517 69.882 1 131.38 ? C4' ANP 701 E 1 HETATM 16 O O4' ANP . . . O 2 -83.342 -28.294 68.452 1 115.36 ? O4' ANP 701 E 1 HETATM 17 C C3' ANP . . . O 2 -83.468 -30.03 70.071 1 125.52 ? C3' ANP 701 E 1 HETATM 18 O O3' ANP . . . O 2 -84.807 -30.496 70.181 1 150.85 ? O3' ANP 701 E 1 HETATM 19 C C2' ANP . . . O 2 -82.781 -30.55 68.811 1 153.79 ? C2' ANP 701 E 1 HETATM 20 O O2' ANP . . . O 2 -83.216 -31.861 68.471 1 108.05 ? O2' ANP 701 E 1 HETATM 21 C C1' ANP . . . O 2 -83.27 -29.539 67.783 1 105.3 ? C1' ANP 701 E 1 HETATM 22 N N9 ANP . . . O 2 -82.409 -29.414 66.612 1 133.02 ? N9 ANP 701 E 1 HETATM 23 C C8 ANP . . . O 2 -81.193 -28.787 66.534 1 141.64 ? C8 ANP 701 E 1 HETATM 24 N N7 ANP . . . O 2 -80.618 -28.883 65.359 1 135.4 ? N7 ANP 701 E 1 HETATM 25 C C5 ANP . . . O 2 -81.488 -29.682 64.632 1 119.56 ? C5 ANP 701 E 1 HETATM 26 C C6 ANP . . . O 2 -81.447 -30.175 63.313 1 120.62 ? C6 ANP 701 E 1 HETATM 27 N N6 ANP . . . O 2 -80.457 -29.918 62.455 1 127.85 ? N6 ANP 701 E 1 HETATM 28 N N1 ANP . . . O 2 -82.477 -30.947 62.9 1 118.91 ? N1 ANP 701 E 1 HETATM 29 C C2 ANP . . . O 2 -83.471 -31.206 63.755 1 122.45 ? C2 ANP 701 E 1 HETATM 30 N N3 ANP . . . O 2 -83.616 -30.799 65.019 1 119.7 ? N3 ANP 701 E 1 HETATM 31 C C4 ANP . . . O 2 -82.585 -30.035 65.399 1 112.97 ? C4 ANP 701 E 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #