data_6PAT
#
_model_server_result.job_id            Y6IXod27ltF-TeGRsu5F1w 
_model_server_result.datetime_utc      '2024-10-12 12:27:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pat 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    6PAT 
#
_exptl.entry_id    6PAT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PAT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PAT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6PAT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           HEM 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      901 
_pdbx_nonpoly_scheme.auth_seq_num     901 
_pdbx_nonpoly_scheme.pdb_mon_id       HEM 
_pdbx_nonpoly_scheme.auth_mon_id      HEM 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 139.268 138.165 172.658 1 44.32 ? CHA HEM 901 B 1 
HETATM 2 C CHB HEM . . . C 3 140.5 134.832 175.957 1 46.38 ? CHB HEM 901 B 1 
HETATM 3 C CHC HEM . . . C 3 145.087 136.339 175.831 1 53.57 ? CHC HEM 901 B 1 
HETATM 4 C CHD HEM . . . C 3 143.681 140.217 173.272 1 54.88 ? CHD HEM 901 B 1 
HETATM 5 C C1A HEM . . . C 3 139.264 137.017 173.419 1 44.52 ? C1A HEM 901 B 1 
HETATM 6 C C2A HEM . . . C 3 138.318 135.92 173.324 1 41.23 ? C2A HEM 901 B 1 
HETATM 7 C C3A HEM . . . C 3 138.668 135.003 174.235 1 47.75 ? C3A HEM 901 B 1 
HETATM 8 C C4A HEM . . . C 3 139.836 135.484 174.94 1 47.07 ? C4A HEM 901 B 1 
HETATM 9 C CMA HEM . . . C 3 137.972 133.656 174.513 1 45.7 ? CMA HEM 901 B 1 
HETATM 10 C CAA HEM . . . C 3 137.132 135.827 172.339 1 40.02 ? CAA HEM 901 B 1 
HETATM 11 C CBA HEM . . . C 3 136.05 136.864 172.659 1 42.16 ? CBA HEM 901 B 1 
HETATM 12 C CGA HEM . . . C 3 135.016 136.328 173.622 1 42.65 ? CGA HEM 901 B 1 
HETATM 13 O O1A HEM . . . C 3 133.981 137.016 173.84 1 42.66 ? O1A HEM 901 B 1 
HETATM 14 O O2A HEM . . . C 3 135.208 135.22 174.179 1 45.49 ? O2A HEM 901 B 1 
HETATM 15 C C1B HEM . . . C 3 141.853 134.909 176.182 1 50.52 ? C1B HEM 901 B 1 
HETATM 16 C C2B HEM . . . C 3 142.642 133.979 176.965 1 49.65 ? C2B HEM 901 B 1 
HETATM 17 C C3B HEM . . . C 3 143.922 134.406 176.934 1 55.28 ? C3B HEM 901 B 1 
HETATM 18 C C4B HEM . . . C 3 143.961 135.601 176.116 1 54.19 ? C4B HEM 901 B 1 
HETATM 19 C CMB HEM . . . C 3 142.018 132.763 177.687 1 49.14 ? CMB HEM 901 B 1 
HETATM 20 C CAB HEM . . . C 3 145.211 133.83 177.573 1 56.66 ? CAB HEM 901 B 1 
HETATM 21 C CBB HEM . . . C 3 145.301 132.602 178.098 1 55.79 ? CBB HEM 901 B 1 
HETATM 22 C C1C HEM . . . C 3 145.117 137.506 175.1 1 54.23 ? C1C HEM 901 B 1 
HETATM 23 C C2C HEM . . . C 3 146.312 138.24 174.749 1 56.07 ? C2C HEM 901 B 1 
HETATM 24 C C3C HEM . . . C 3 145.948 139.325 174.052 1 54.38 ? C3C HEM 901 B 1 
HETATM 25 C C4C HEM . . . C 3 144.491 139.308 173.922 1 53.08 ? C4C HEM 901 B 1 
HETATM 26 C CMC HEM . . . C 3 147.754 137.831 175.14 1 57.61 ? CMC HEM 901 B 1 
HETATM 27 C CAC HEM . . . C 3 146.965 140.355 173.493 1 62.47 ? CAC HEM 901 B 1 
HETATM 28 C CBC HEM . . . C 3 146.61 141.535 172.971 1 65.41 ? CBC HEM 901 B 1 
HETATM 29 C C1D HEM . . . C 3 142.421 139.97 172.76 1 53.57 ? C1D HEM 901 B 1 
HETATM 30 C C2D HEM . . . C 3 141.804 140.697 171.67 1 49.34 ? C2D HEM 901 B 1 
HETATM 31 C C3D HEM . . . C 3 140.425 140.054 171.479 1 45.47 ? C3D HEM 901 B 1 
HETATM 32 C C4D HEM . . . C 3 140.346 139.007 172.474 1 48.83 ? C4D HEM 901 B 1 
HETATM 33 C CMD HEM . . . C 3 142.405 141.866 170.864 1 53.33 ? CMD HEM 901 B 1 
HETATM 34 C CAD HEM . . . C 3 139.348 140.435 170.445 1 45.87 ? CAD HEM 901 B 1 
HETATM 35 C CBD HEM . . . C 3 138.499 141.59 170.965 1 46.11 ? CBD HEM 901 B 1 
HETATM 36 C CGD HEM . . . C 3 137.469 141.953 169.924 1 46.83 ? CGD HEM 901 B 1 
HETATM 37 O O1D HEM . . . C 3 137.328 141.199 168.93 1 49.69 ? O1D HEM 901 B 1 
HETATM 38 O O2D HEM . . . C 3 136.785 142.994 170.084 1 47.61 ? O2D HEM 901 B 1 
HETATM 39 N NA HEM . . . C 3 140.173 136.717 174.414 1 46.29 ? NA HEM 901 B 1 
HETATM 40 N NB HEM . . . C 3 142.685 135.885 175.678 1 51.39 ? NB HEM 901 B 1 
HETATM 41 N NC HEM . . . C 3 144.028 138.185 174.582 1 54.59 ? NC HEM 901 B 1 
HETATM 42 N ND HEM . . . C 3 141.535 138.992 173.204 1 48.59 ? ND HEM 901 B 1 
HETATM 43 FE FE HEM . . . C 3 142.056 137.585 174.658 1 51.78 ? FE HEM 901 B 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#