data_6PAU
#
_model_server_result.job_id            -z-zVc4IeEG1ChnEiDt_-w 
_model_server_result.datetime_utc      '2025-02-27 07:48:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pau 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":507}' 
#
_entry.id    6PAU 
#
_exptl.entry_id    6PAU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.25 
_cell.angle_gamma         90 
_cell.entry_id            6PAU 
_cell.length_a            63.162 
_cell.length_b            46.35 
_cell.length_c            74.395 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PAU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B NZ LYS 1 C LYS 3 1_555 O C1 MYR . C MYR 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
metalc ? metalc1 A O LEU 141 A LEU 254 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? 
metalc ? metalc2 A N LYS 144 A LYS 257 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc3 C MG MG . A MG 501 1_555 M O25 4PS . A 4PS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 178 n n 
C1 C2 GOL sing 179 n n 
C1 H11 GOL sing 180 n n 
C1 H12 GOL sing 181 n n 
O1 HO1 GOL sing 182 n n 
C2 O2 GOL sing 183 n n 
C2 C3 GOL sing 184 n n 
C2 H2 GOL sing 185 n n 
O2 HO2 GOL sing 186 n n 
C3 O3 GOL sing 187 n n 
C3 H31 GOL sing 188 n n 
C3 H32 GOL sing 189 n n 
O3 HO3 GOL sing 190 n n 
#
_atom_sites.entry_id                     6PAU 
_atom_sites.fract_transf_matrix[1][1]    0.015832 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007132 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021575 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014743 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 501 1 MG MG . 
D 4 GOL A 1 502 1 GOL GOL . 
E 4 GOL A 1 503 2 GOL GOL . 
F 4 GOL A 1 504 3 GOL GOL . 
G 4 GOL A 1 505 4 GOL GOL . 
H 4 GOL A 1 506 5 GOL GOL . 
I 4 GOL A 1 507 6 GOL GOL . 
J 4 GOL A 1 508 7 GOL GOL . 
K 4 GOL A 1 509 8 GOL GOL . 
L 4 GOL A 1 510 9 GOL GOL . 
M 5 4PS A 1 511 1 4PS NHW . 
N 6 SO4 A 1 512 1 SO4 SO4 . 
O 7 MYR C 1 1000 1000 MYR MYR . 
P 8 HOH A 1 601 114 HOH HOH . 
P 8 HOH A 2 602 9 HOH HOH . 
P 8 HOH A 3 603 76 HOH HOH . 
P 8 HOH A 4 604 44 HOH HOH . 
P 8 HOH A 5 605 30 HOH HOH . 
P 8 HOH A 6 606 124 HOH HOH . 
P 8 HOH A 7 607 20 HOH HOH . 
P 8 HOH A 8 608 11 HOH HOH . 
P 8 HOH A 9 609 46 HOH HOH . 
P 8 HOH A 10 610 27 HOH HOH . 
P 8 HOH A 11 611 50 HOH HOH . 
P 8 HOH A 12 612 39 HOH HOH . 
P 8 HOH A 13 613 84 HOH HOH . 
P 8 HOH A 14 614 28 HOH HOH . 
P 8 HOH A 15 615 16 HOH HOH . 
P 8 HOH A 16 616 14 HOH HOH . 
P 8 HOH A 17 617 136 HOH HOH . 
P 8 HOH A 18 618 98 HOH HOH . 
P 8 HOH A 19 619 23 HOH HOH . 
P 8 HOH A 20 620 56 HOH HOH . 
P 8 HOH A 21 621 87 HOH HOH . 
P 8 HOH A 22 622 125 HOH HOH . 
P 8 HOH A 23 623 47 HOH HOH . 
P 8 HOH A 24 624 21 HOH HOH . 
P 8 HOH A 25 625 17 HOH HOH . 
P 8 HOH A 26 626 82 HOH HOH . 
P 8 HOH A 27 627 36 HOH HOH . 
P 8 HOH A 28 628 75 HOH HOH . 
P 8 HOH A 29 629 80 HOH HOH . 
P 8 HOH A 30 630 89 HOH HOH . 
P 8 HOH A 31 631 41 HOH HOH . 
P 8 HOH A 32 632 57 HOH HOH . 
P 8 HOH A 33 633 111 HOH HOH . 
P 8 HOH A 34 634 15 HOH HOH . 
P 8 HOH A 35 635 13 HOH HOH . 
P 8 HOH A 36 636 95 HOH HOH . 
P 8 HOH A 37 637 18 HOH HOH . 
P 8 HOH A 38 638 99 HOH HOH . 
P 8 HOH A 39 639 35 HOH HOH . 
P 8 HOH A 40 640 122 HOH HOH . 
P 8 HOH A 41 641 77 HOH HOH . 
P 8 HOH A 42 642 70 HOH HOH . 
P 8 HOH A 43 643 88 HOH HOH . 
P 8 HOH A 44 644 10 HOH HOH . 
P 8 HOH A 45 645 134 HOH HOH . 
P 8 HOH A 46 646 69 HOH HOH . 
P 8 HOH A 47 647 145 HOH HOH . 
P 8 HOH A 48 648 58 HOH HOH . 
P 8 HOH A 49 649 137 HOH HOH . 
P 8 HOH A 50 650 37 HOH HOH . 
P 8 HOH A 51 651 32 HOH HOH . 
P 8 HOH A 52 652 115 HOH HOH . 
P 8 HOH A 53 653 144 HOH HOH . 
P 8 HOH A 54 654 3 HOH HOH . 
P 8 HOH A 55 655 78 HOH HOH . 
P 8 HOH A 56 656 67 HOH HOH . 
P 8 HOH A 57 657 73 HOH HOH . 
P 8 HOH A 58 658 34 HOH HOH . 
P 8 HOH A 59 659 107 HOH HOH . 
P 8 HOH A 60 660 106 HOH HOH . 
P 8 HOH A 61 661 1 HOH HOH . 
P 8 HOH A 62 662 86 HOH HOH . 
P 8 HOH A 63 663 24 HOH HOH . 
P 8 HOH A 64 664 79 HOH HOH . 
P 8 HOH A 65 665 43 HOH HOH . 
P 8 HOH A 66 666 7 HOH HOH . 
P 8 HOH A 67 667 53 HOH HOH . 
P 8 HOH A 68 668 29 HOH HOH . 
P 8 HOH A 69 669 54 HOH HOH . 
P 8 HOH A 70 670 166 HOH HOH . 
P 8 HOH A 71 671 100 HOH HOH . 
P 8 HOH A 72 672 55 HOH HOH . 
P 8 HOH A 73 673 51 HOH HOH . 
P 8 HOH A 74 674 141 HOH HOH . 
P 8 HOH A 75 675 61 HOH HOH . 
P 8 HOH A 76 676 129 HOH HOH . 
P 8 HOH A 77 677 45 HOH HOH . 
P 8 HOH A 78 678 22 HOH HOH . 
P 8 HOH A 79 679 49 HOH HOH . 
P 8 HOH A 80 680 60 HOH HOH . 
P 8 HOH A 81 681 101 HOH HOH . 
P 8 HOH A 82 682 2 HOH HOH . 
P 8 HOH A 83 683 123 HOH HOH . 
P 8 HOH A 84 684 52 HOH HOH . 
P 8 HOH A 85 685 96 HOH HOH . 
P 8 HOH A 86 686 162 HOH HOH . 
P 8 HOH A 87 687 85 HOH HOH . 
P 8 HOH A 88 688 116 HOH HOH . 
P 8 HOH A 89 689 119 HOH HOH . 
P 8 HOH A 90 690 108 HOH HOH . 
P 8 HOH A 91 691 62 HOH HOH . 
P 8 HOH A 92 692 131 HOH HOH . 
P 8 HOH A 93 693 64 HOH HOH . 
P 8 HOH A 94 694 26 HOH HOH . 
P 8 HOH A 95 695 63 HOH HOH . 
P 8 HOH A 96 696 105 HOH HOH . 
P 8 HOH A 97 697 165 HOH HOH . 
P 8 HOH A 98 698 33 HOH HOH . 
P 8 HOH A 99 699 104 HOH HOH . 
P 8 HOH A 100 700 6 HOH HOH . 
P 8 HOH A 101 701 4 HOH HOH . 
P 8 HOH A 102 702 42 HOH HOH . 
P 8 HOH A 103 703 25 HOH HOH . 
P 8 HOH A 104 704 66 HOH HOH . 
P 8 HOH A 105 705 72 HOH HOH . 
P 8 HOH A 106 706 148 HOH HOH . 
P 8 HOH A 107 707 161 HOH HOH . 
P 8 HOH A 108 708 59 HOH HOH . 
P 8 HOH A 109 709 94 HOH HOH . 
P 8 HOH A 110 710 48 HOH HOH . 
P 8 HOH A 111 711 90 HOH HOH . 
P 8 HOH A 112 712 118 HOH HOH . 
P 8 HOH A 113 713 68 HOH HOH . 
P 8 HOH A 114 714 40 HOH HOH . 
P 8 HOH A 115 715 147 HOH HOH . 
P 8 HOH A 116 716 97 HOH HOH . 
P 8 HOH A 117 717 110 HOH HOH . 
P 8 HOH A 118 718 149 HOH HOH . 
P 8 HOH A 119 719 91 HOH HOH . 
P 8 HOH A 120 720 156 HOH HOH . 
P 8 HOH A 121 721 102 HOH HOH . 
P 8 HOH A 122 722 142 HOH HOH . 
P 8 HOH A 123 723 139 HOH HOH . 
P 8 HOH A 124 724 74 HOH HOH . 
P 8 HOH A 125 725 158 HOH HOH . 
P 8 HOH A 126 726 155 HOH HOH . 
P 8 HOH A 127 727 157 HOH HOH . 
P 8 HOH A 128 728 154 HOH HOH . 
P 8 HOH A 129 729 174 HOH HOH . 
P 8 HOH A 130 730 159 HOH HOH . 
P 8 HOH A 131 731 167 HOH HOH . 
P 8 HOH A 132 732 153 HOH HOH . 
P 8 HOH A 133 733 175 HOH HOH . 
P 8 HOH A 134 734 65 HOH HOH . 
P 8 HOH A 135 735 126 HOH HOH . 
P 8 HOH A 136 736 81 HOH HOH . 
P 8 HOH A 137 737 160 HOH HOH . 
P 8 HOH A 138 738 168 HOH HOH . 
P 8 HOH A 139 739 164 HOH HOH . 
P 8 HOH A 140 740 133 HOH HOH . 
P 8 HOH A 141 741 173 HOH HOH . 
P 8 HOH A 142 742 150 HOH HOH . 
P 8 HOH A 143 743 103 HOH HOH . 
P 8 HOH A 144 744 163 HOH HOH . 
P 8 HOH A 145 745 143 HOH HOH . 
P 8 HOH A 146 746 172 HOH HOH . 
P 8 HOH A 147 747 152 HOH HOH . 
P 8 HOH A 148 748 120 HOH HOH . 
P 8 HOH A 149 749 176 HOH HOH . 
P 8 HOH A 150 750 170 HOH HOH . 
P 8 HOH A 151 751 109 HOH HOH . 
P 8 HOH A 152 752 8 HOH HOH . 
P 8 HOH A 153 753 135 HOH HOH . 
P 8 HOH A 154 754 93 HOH HOH . 
P 8 HOH A 155 755 171 HOH HOH . 
P 8 HOH A 156 756 127 HOH HOH . 
P 8 HOH A 157 757 146 HOH HOH . 
P 8 HOH A 158 758 121 HOH HOH . 
P 8 HOH A 159 759 92 HOH HOH . 
P 8 HOH A 160 760 5 HOH HOH . 
P 8 HOH A 161 761 128 HOH HOH . 
P 8 HOH A 162 762 113 HOH HOH . 
P 8 HOH A 163 763 132 HOH HOH . 
P 8 HOH A 164 764 130 HOH HOH . 
P 8 HOH A 165 765 169 HOH HOH . 
P 8 HOH A 166 766 83 HOH HOH . 
P 8 HOH A 167 767 138 HOH HOH . 
Q 8 HOH C 1 1101 19 HOH HOH . 
Q 8 HOH C 2 1102 112 HOH HOH . 
Q 8 HOH C 3 1103 31 HOH HOH . 
Q 8 HOH C 4 1104 12 HOH HOH . 
Q 8 HOH C 5 1105 140 HOH HOH . 
Q 8 HOH C 6 1106 38 HOH HOH . 
Q 8 HOH C 7 1107 117 HOH HOH . 
Q 8 HOH C 8 1108 151 HOH HOH . 
Q 8 HOH C 9 1109 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 4 10.559 -18.654 20.01 1 57.03 ? C1 GOL 507 A 1 
HETATM 2 O O1 GOL . . . I 4 10.092 -19.74 19.228 1 60.83 ? O1 GOL 507 A 1 
HETATM 3 C C2 GOL . . . I 4 11.998 -18.98 20.483 1 57.41 ? C2 GOL 507 A 1 
HETATM 4 O O2 GOL . . . I 4 12.877 -19.112 19.424 1 60.97 ? O2 GOL 507 A 1 
HETATM 5 C C3 GOL . . . I 4 12.402 -17.782 21.364 1 50.6 ? C3 GOL 507 A 1 
HETATM 6 O O3 GOL . . . I 4 13.519 -18.148 22.146 1 51.08 ? O3 GOL 507 A 1 
HETATM 7 H H11 GOL . . . I 4 10.572 -17.821 19.513 1 68.42 ? H11 GOL 507 A 1 
HETATM 8 H H12 GOL . . . I 4 10.001 -18.491 20.786 1 68.42 ? H12 GOL 507 A 1 
HETATM 9 H HO1 GOL . . . I 4 9.243 -19.696 19.235 1 72.99 ? HO1 GOL 507 A 1 
HETATM 10 H H2 GOL . . . I 4 12.004 -19.819 20.97 1 68.87 ? H2 GOL 507 A 1 
HETATM 11 H HO2 GOL . . . I 4 13.565 -19.524 19.706 1 73.15 ? HO2 GOL 507 A 1 
HETATM 12 H H31 GOL . . . I 4 12.577 -17.024 20.785 1 60.7 ? H31 GOL 507 A 1 
HETATM 13 H H32 GOL . . . I 4 11.634 -17.525 21.898 1 60.7 ? H32 GOL 507 A 1 
HETATM 14 H HO3 GOL . . . I 4 13.249 -18.198 22.95 1 61.28 ? HO3 GOL 507 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#