data_6PAV # _model_server_result.job_id gvGcGGKTv9Xd6HKDKxKtOg _model_server_result.datetime_utc '2024-10-10 01:15:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6PAV # _exptl.entry_id 6PAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.66 _cell.angle_gamma 90 _cell.entry_id 6PAV _cell.length_a 92.361 _cell.length_b 58.217 _cell.length_c 154.035 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 D ACE 2 1_555 B N LYS 2 D LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale2 D NZ LYS 2 C LYS 3 1_555 L C1 MYR . C MYR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PAV _atom_sites.fract_transf_matrix[1][1] 0.010827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000125 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 COA B 1 501 501 COA COA . F 5 GOL B 1 502 502 GOL GOL . G 5 GOL B 1 503 503 GOL GOL . H 6 MYR B 1 504 101 MYR MYR . I 4 COA A 1 501 501 COA COA . J 5 GOL A 1 502 502 GOL GOL . K 5 GOL A 1 503 503 GOL GOL . L 6 MYR C 1 101 101 MYR MYR . M 7 HOH B 1 601 70 HOH HOH . M 7 HOH B 2 602 49 HOH HOH . M 7 HOH B 3 603 80 HOH HOH . M 7 HOH B 4 604 71 HOH HOH . M 7 HOH B 5 605 33 HOH HOH . M 7 HOH B 6 606 2 HOH HOH . M 7 HOH B 7 607 78 HOH HOH . M 7 HOH B 8 608 17 HOH HOH . M 7 HOH B 9 609 72 HOH HOH . M 7 HOH B 10 610 24 HOH HOH . M 7 HOH B 11 611 31 HOH HOH . M 7 HOH B 12 612 63 HOH HOH . M 7 HOH B 13 613 21 HOH HOH . M 7 HOH B 14 614 23 HOH HOH . M 7 HOH B 15 615 55 HOH HOH . M 7 HOH B 16 616 4 HOH HOH . M 7 HOH B 17 617 13 HOH HOH . M 7 HOH B 18 618 1 HOH HOH . M 7 HOH B 19 619 11 HOH HOH . M 7 HOH B 20 620 10 HOH HOH . M 7 HOH B 21 621 32 HOH HOH . M 7 HOH B 22 622 60 HOH HOH . M 7 HOH B 23 623 27 HOH HOH . M 7 HOH B 24 624 46 HOH HOH . M 7 HOH B 25 625 43 HOH HOH . M 7 HOH B 26 626 25 HOH HOH . M 7 HOH B 27 627 59 HOH HOH . M 7 HOH B 28 628 40 HOH HOH . M 7 HOH B 29 629 28 HOH HOH . M 7 HOH B 30 630 50 HOH HOH . M 7 HOH B 31 631 64 HOH HOH . M 7 HOH B 32 632 83 HOH HOH . M 7 HOH B 33 633 77 HOH HOH . M 7 HOH B 34 634 48 HOH HOH . M 7 HOH B 35 635 62 HOH HOH . N 7 HOH D 1 201 8 HOH HOH . O 7 HOH A 1 601 45 HOH HOH . O 7 HOH A 2 602 82 HOH HOH . O 7 HOH A 3 603 36 HOH HOH . O 7 HOH A 4 604 57 HOH HOH . O 7 HOH A 5 605 68 HOH HOH . O 7 HOH A 6 606 73 HOH HOH . O 7 HOH A 7 607 74 HOH HOH . O 7 HOH A 8 608 35 HOH HOH . O 7 HOH A 9 609 53 HOH HOH . O 7 HOH A 10 610 51 HOH HOH . O 7 HOH A 11 611 37 HOH HOH . O 7 HOH A 12 612 69 HOH HOH . O 7 HOH A 13 613 6 HOH HOH . O 7 HOH A 14 614 7 HOH HOH . O 7 HOH A 15 615 52 HOH HOH . O 7 HOH A 16 616 15 HOH HOH . O 7 HOH A 17 617 39 HOH HOH . O 7 HOH A 18 618 3 HOH HOH . O 7 HOH A 19 619 67 HOH HOH . O 7 HOH A 20 620 56 HOH HOH . O 7 HOH A 21 621 79 HOH HOH . O 7 HOH A 22 622 41 HOH HOH . O 7 HOH A 23 623 22 HOH HOH . O 7 HOH A 24 624 16 HOH HOH . O 7 HOH A 25 625 34 HOH HOH . O 7 HOH A 26 626 42 HOH HOH . O 7 HOH A 27 627 18 HOH HOH . O 7 HOH A 28 628 20 HOH HOH . O 7 HOH A 29 629 30 HOH HOH . O 7 HOH A 30 630 5 HOH HOH . O 7 HOH A 31 631 38 HOH HOH . O 7 HOH A 32 632 47 HOH HOH . O 7 HOH A 33 633 14 HOH HOH . O 7 HOH A 34 634 61 HOH HOH . O 7 HOH A 35 635 81 HOH HOH . O 7 HOH A 36 636 12 HOH HOH . O 7 HOH A 37 637 26 HOH HOH . O 7 HOH A 38 638 58 HOH HOH . O 7 HOH A 39 639 44 HOH HOH . O 7 HOH A 40 640 19 HOH HOH . O 7 HOH A 41 641 9 HOH HOH . O 7 HOH A 42 642 65 HOH HOH . O 7 HOH A 43 643 84 HOH HOH . O 7 HOH A 44 644 76 HOH HOH . O 7 HOH A 45 645 29 HOH HOH . P 7 HOH C 1 201 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . E 4 13.203 21.518 18.637 1 70.57 ? N1A COA 501 B 1 HETATM 2 C C2A COA . . . E 4 13.474 22.672 19.257 1 73.84 ? C2A COA 501 B 1 HETATM 3 N N3A COA . . . E 4 13.654 23.828 18.62 1 77.67 ? N3A COA 501 B 1 HETATM 4 C C4A COA . . . E 4 13.567 23.858 17.284 1 80.07 ? C4A COA 501 B 1 HETATM 5 C C5A COA . . . E 4 13.282 22.658 16.517 1 73.85 ? C5A COA 501 B 1 HETATM 6 C C6A COA . . . E 4 13.094 21.433 17.305 1 71.9 ? C6A COA 501 B 1 HETATM 7 N N6A COA . . . E 4 12.823 20.242 16.746 1 68.78 ? N6A COA 501 B 1 HETATM 8 N N7A COA . . . E 4 13.273 23.036 15.225 1 77.21 ? N7A COA 501 B 1 HETATM 9 C C8A COA . . . E 4 13.549 24.366 15.18 1 75.46 ? C8A COA 501 B 1 HETATM 10 N N9A COA . . . E 4 13.69 24.825 16.416 1 75.94 ? N9A COA 501 B 1 HETATM 11 C C1B COA . . . E 4 13.993 26.138 16.893 1 79.39 ? C1B COA 501 B 1 HETATM 12 C C2B COA . . . E 4 15.502 26.404 16.919 1 78.68 ? C2B COA 501 B 1 HETATM 13 O O2B COA . . . E 4 15.92 25.807 18.129 1 77.75 ? O2B COA 501 B 1 HETATM 14 C C3B COA . . . E 4 15.525 27.919 16.821 1 79.76 ? C3B COA 501 B 1 HETATM 15 O O3B COA . . . E 4 16.114 28.439 18.003 1 79.46 ? O3B COA 501 B 1 HETATM 16 P P3B COA . . . E 4 17.658 28.917 17.908 1 79.62 ? P3B COA 501 B 1 HETATM 17 O O7A COA . . . E 4 18.172 29.219 19.293 1 79.38 ? O7A COA 501 B 1 HETATM 18 O O8A COA . . . E 4 17.565 30.158 17.06 1 79.83 ? O8A COA 501 B 1 HETATM 19 O O9A COA . . . E 4 18.322 27.717 17.271 1 78.94 ? O9A COA 501 B 1 HETATM 20 C C4B COA . . . E 4 14.065 28.373 16.611 1 81.56 ? C4B COA 501 B 1 HETATM 21 O O4B COA . . . E 4 13.316 27.205 16.253 1 80.73 ? O4B COA 501 B 1 HETATM 22 C C5B COA . . . E 4 13.867 29.438 15.543 1 84.59 ? C5B COA 501 B 1 HETATM 23 O O5B COA . . . E 4 13.278 28.988 14.333 1 85.99 ? O5B COA 501 B 1 HETATM 24 P P1A COA . . . E 4 11.69 29.08 14.15 1 88.05 ? P1A COA 501 B 1 HETATM 25 O O1A COA . . . E 4 11.135 29.132 15.539 1 91.15 ? O1A COA 501 B 1 HETATM 26 O O2A COA . . . E 4 11.226 30.086 13.127 1 86.8 ? O2A COA 501 B 1 HETATM 27 O O3A COA . . . E 4 11.599 27.628 13.499 1 80.2 ? O3A COA 501 B 1 HETATM 28 P P2A COA . . . E 4 10.314 27.127 12.708 1 73.57 ? P2A COA 501 B 1 HETATM 29 O O4A COA . . . E 4 10.87 26.746 11.369 1 70.67 ? O4A COA 501 B 1 HETATM 30 O O5A COA . . . E 4 9.269 28.205 12.87 1 70.45 ? O5A COA 501 B 1 HETATM 31 O O6A COA . . . E 4 9.908 25.835 13.571 1 71.26 ? O6A COA 501 B 1 HETATM 32 C CBP COA . . . E 4 9.845 23.43 13.243 1 66.59 ? CBP COA 501 B 1 HETATM 33 C CCP COA . . . E 4 10.703 24.656 13.435 1 70.32 ? CCP COA 501 B 1 HETATM 34 C CDP COA . . . E 4 10.647 22.291 13.848 1 68.16 ? CDP COA 501 B 1 HETATM 35 C CEP COA . . . E 4 8.557 23.58 14.013 1 68.2 ? CEP COA 501 B 1 HETATM 36 C CAP COA . . . E 4 9.54 23.15 11.759 1 70.15 ? CAP COA 501 B 1 HETATM 37 O OAP COA . . . E 4 10.734 23.128 10.984 1 68.36 ? OAP COA 501 B 1 HETATM 38 C C9P COA . . . E 4 8.857 21.817 11.652 1 69.6 ? C9P COA 501 B 1 HETATM 39 O O9P COA . . . E 4 7.64 21.733 11.571 1 70.54 ? O9P COA 501 B 1 HETATM 40 N N8P COA . . . E 4 9.657 20.756 11.603 1 67.6 ? N8P COA 501 B 1 HETATM 41 C C7P COA . . . E 4 9.075 19.481 12.039 1 61.69 ? C7P COA 501 B 1 HETATM 42 C C6P COA . . . E 4 9.375 19.02 13.455 1 56.65 ? C6P COA 501 B 1 HETATM 43 C C5P COA . . . E 4 10.865 18.898 13.673 1 50.33 ? C5P COA 501 B 1 HETATM 44 O O5P COA . . . E 4 11.629 18.863 12.731 1 50.68 ? O5P COA 501 B 1 HETATM 45 N N4P COA . . . E 4 11.273 18.659 14.911 1 48.38 ? N4P COA 501 B 1 HETATM 46 H H2A COA . . . E 4 13.54 22.672 20.338 1 88.73 ? H2A COA 501 B 1 HETATM 47 H H61A COA . . . E 4 12.698 19.405 17.298 1 82.67 ? H61A COA 501 B 1 HETATM 48 H H62A COA . . . E 4 12.763 20.235 15.745 1 82.67 ? H62A COA 501 B 1 HETATM 49 H H8A COA . . . E 4 13.592 24.967 14.28 1 90.68 ? H8A COA 501 B 1 HETATM 50 H H1B COA . . . E 4 13.676 26.176 17.944 1 95.4 ? H1B COA 501 B 1 HETATM 51 H H2B COA . . . E 4 15.986 25.947 16.044 1 94.54 ? H2B COA 501 B 1 HETATM 52 H HO2A COA . . . E 4 15.987 24.85 18.014 1 93.42 ? HO2A COA 501 B 1 HETATM 53 H H3B COA . . . E 4 16.122 28.206 15.944 1 95.84 ? H3B COA 501 B 1 HETATM 54 H H4B COA . . . E 4 13.688 28.769 17.564 1 98 ? H4B COA 501 B 1 HETATM 55 H H51A COA . . . E 4 13.244 30.233 15.958 1 101.63 ? H51A COA 501 B 1 HETATM 56 H H52A COA . . . E 4 14.835 29.885 15.31 1 101.63 ? H52A COA 501 B 1 HETATM 57 H H121 COA . . . E 4 11.255 24.547 14.359 1 84.51 ? H121 COA 501 B 1 HETATM 58 H H122 COA . . . E 4 11.414 24.762 12.614 1 84.51 ? H122 COA 501 B 1 HETATM 59 H H131 COA . . . E 4 11.509 22.102 13.263 1 81.92 ? H131 COA 501 B 1 HETATM 60 H H132 COA . . . E 4 10.049 21.431 13.907 1 81.92 ? H132 COA 501 B 1 HETATM 61 H H133 COA . . . E 4 10.932 22.546 14.834 1 81.92 ? H133 COA 501 B 1 HETATM 62 H H141 COA . . . E 4 8.018 24.398 13.626 1 81.97 ? H141 COA 501 B 1 HETATM 63 H H142 COA . . . E 4 7.975 22.699 13.935 1 81.97 ? H142 COA 501 B 1 HETATM 64 H H143 COA . . . E 4 8.78 23.761 15.032 1 81.97 ? H143 COA 501 B 1 HETATM 65 H H10 COA . . . E 4 8.866 23.932 11.384 1 84.3 ? H10 COA 501 B 1 HETATM 66 H HO1 COA . . . E 4 10.669 22.482 10.268 1 82.16 ? HO1 COA 501 B 1 HETATM 67 H HN8 COA . . . E 4 10.657 20.814 11.558 1 81.24 ? HN8 COA 501 B 1 HETATM 68 H H71 COA . . . E 4 9.43 18.706 11.357 1 74.15 ? H71 COA 501 B 1 HETATM 69 H H72 COA . . . E 4 7.991 19.52 11.92 1 74.15 ? H72 COA 501 B 1 HETATM 70 H H61 COA . . . E 4 8.91 18.046 13.618 1 68.1 ? H61 COA 501 B 1 HETATM 71 H H62 COA . . . E 4 8.942 19.712 14.177 1 68.1 ? H62 COA 501 B 1 HETATM 72 H HN4 COA . . . E 4 12.257 18.517 15.075 1 58.18 ? HN4 COA 501 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 72 #