data_6PAV # _model_server_result.job_id AXN_cDB1bxbnlMan7zBE0Q _model_server_result.datetime_utc '2024-10-10 01:24:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 6PAV # _exptl.entry_id 6PAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.66 _cell.angle_gamma 90 _cell.entry_id 6PAV _cell.length_a 92.361 _cell.length_b 58.217 _cell.length_c 154.035 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 D ACE 2 1_555 B N LYS 2 D LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale2 D NZ LYS 2 C LYS 3 1_555 L C1 MYR . C MYR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PAV _atom_sites.fract_transf_matrix[1][1] 0.010827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000125 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 COA B 1 501 501 COA COA . F 5 GOL B 1 502 502 GOL GOL . G 5 GOL B 1 503 503 GOL GOL . H 6 MYR B 1 504 101 MYR MYR . I 4 COA A 1 501 501 COA COA . J 5 GOL A 1 502 502 GOL GOL . K 5 GOL A 1 503 503 GOL GOL . L 6 MYR C 1 101 101 MYR MYR . M 7 HOH B 1 601 70 HOH HOH . M 7 HOH B 2 602 49 HOH HOH . M 7 HOH B 3 603 80 HOH HOH . M 7 HOH B 4 604 71 HOH HOH . M 7 HOH B 5 605 33 HOH HOH . M 7 HOH B 6 606 2 HOH HOH . M 7 HOH B 7 607 78 HOH HOH . M 7 HOH B 8 608 17 HOH HOH . M 7 HOH B 9 609 72 HOH HOH . M 7 HOH B 10 610 24 HOH HOH . M 7 HOH B 11 611 31 HOH HOH . M 7 HOH B 12 612 63 HOH HOH . M 7 HOH B 13 613 21 HOH HOH . M 7 HOH B 14 614 23 HOH HOH . M 7 HOH B 15 615 55 HOH HOH . M 7 HOH B 16 616 4 HOH HOH . M 7 HOH B 17 617 13 HOH HOH . M 7 HOH B 18 618 1 HOH HOH . M 7 HOH B 19 619 11 HOH HOH . M 7 HOH B 20 620 10 HOH HOH . M 7 HOH B 21 621 32 HOH HOH . M 7 HOH B 22 622 60 HOH HOH . M 7 HOH B 23 623 27 HOH HOH . M 7 HOH B 24 624 46 HOH HOH . M 7 HOH B 25 625 43 HOH HOH . M 7 HOH B 26 626 25 HOH HOH . M 7 HOH B 27 627 59 HOH HOH . M 7 HOH B 28 628 40 HOH HOH . M 7 HOH B 29 629 28 HOH HOH . M 7 HOH B 30 630 50 HOH HOH . M 7 HOH B 31 631 64 HOH HOH . M 7 HOH B 32 632 83 HOH HOH . M 7 HOH B 33 633 77 HOH HOH . M 7 HOH B 34 634 48 HOH HOH . M 7 HOH B 35 635 62 HOH HOH . N 7 HOH D 1 201 8 HOH HOH . O 7 HOH A 1 601 45 HOH HOH . O 7 HOH A 2 602 82 HOH HOH . O 7 HOH A 3 603 36 HOH HOH . O 7 HOH A 4 604 57 HOH HOH . O 7 HOH A 5 605 68 HOH HOH . O 7 HOH A 6 606 73 HOH HOH . O 7 HOH A 7 607 74 HOH HOH . O 7 HOH A 8 608 35 HOH HOH . O 7 HOH A 9 609 53 HOH HOH . O 7 HOH A 10 610 51 HOH HOH . O 7 HOH A 11 611 37 HOH HOH . O 7 HOH A 12 612 69 HOH HOH . O 7 HOH A 13 613 6 HOH HOH . O 7 HOH A 14 614 7 HOH HOH . O 7 HOH A 15 615 52 HOH HOH . O 7 HOH A 16 616 15 HOH HOH . O 7 HOH A 17 617 39 HOH HOH . O 7 HOH A 18 618 3 HOH HOH . O 7 HOH A 19 619 67 HOH HOH . O 7 HOH A 20 620 56 HOH HOH . O 7 HOH A 21 621 79 HOH HOH . O 7 HOH A 22 622 41 HOH HOH . O 7 HOH A 23 623 22 HOH HOH . O 7 HOH A 24 624 16 HOH HOH . O 7 HOH A 25 625 34 HOH HOH . O 7 HOH A 26 626 42 HOH HOH . O 7 HOH A 27 627 18 HOH HOH . O 7 HOH A 28 628 20 HOH HOH . O 7 HOH A 29 629 30 HOH HOH . O 7 HOH A 30 630 5 HOH HOH . O 7 HOH A 31 631 38 HOH HOH . O 7 HOH A 32 632 47 HOH HOH . O 7 HOH A 33 633 14 HOH HOH . O 7 HOH A 34 634 61 HOH HOH . O 7 HOH A 35 635 81 HOH HOH . O 7 HOH A 36 636 12 HOH HOH . O 7 HOH A 37 637 26 HOH HOH . O 7 HOH A 38 638 58 HOH HOH . O 7 HOH A 39 639 44 HOH HOH . O 7 HOH A 40 640 19 HOH HOH . O 7 HOH A 41 641 9 HOH HOH . O 7 HOH A 42 642 65 HOH HOH . O 7 HOH A 43 643 84 HOH HOH . O 7 HOH A 44 644 76 HOH HOH . O 7 HOH A 45 645 29 HOH HOH . P 7 HOH C 1 201 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . I 4 -10.211 6.877 60.211 1 88.93 ? N1A COA 501 A 1 HETATM 2 C C2A COA . . . I 4 -9.455 5.841 59.844 1 94.32 ? C2A COA 501 A 1 HETATM 3 N N3A COA . . . I 4 -9.564 4.634 60.399 1 106.1 ? N3A COA 501 A 1 HETATM 4 C C4A COA . . . I 4 -10.458 4.415 61.363 1 103.07 ? C4A COA 501 A 1 HETATM 5 C C5A COA . . . I 4 -11.334 5.472 61.838 1 103.62 ? C5A COA 501 A 1 HETATM 6 C C6A COA . . . I 4 -11.137 6.765 61.172 1 85.37 ? C6A COA 501 A 1 HETATM 7 N N6A COA . . . I 4 -11.845 7.857 61.488 1 78.5 ? N6A COA 501 A 1 HETATM 8 N N7A COA . . . I 4 -12.103 4.924 62.8 1 89.12 ? N7A COA 501 A 1 HETATM 9 C C8A COA . . . I 4 -11.744 3.616 62.905 1 106.28 ? C8A COA 501 A 1 HETATM 10 N N9A COA . . . I 4 -10.732 3.358 62.051 1 131.92 ? N9A COA 501 A 1 HETATM 11 C C1B COA . . . I 4 -10.086 2.075 61.8 1 163.4 ? C1B COA 501 A 1 HETATM 12 C C2B COA . . . I 4 -9.41 1.725 63.093 1 182.02 ? C2B COA 501 A 1 HETATM 13 O O2B COA . . . I 4 -8.065 1.675 62.699 1 204.2 ? O2B COA 501 A 1 HETATM 14 C C3B COA . . . I 4 -10.042 0.414 63.493 1 163.07 ? C3B COA 501 A 1 HETATM 15 O O3B COA . . . I 4 -9.038 -0.544 63.573 1 138.24 ? O3B COA 501 A 1 HETATM 16 P P3B COA . . . I 4 -8.511 -0.763 65.07 1 110.51 ? P3B COA 501 A 1 HETATM 17 O O7A COA . . . I 4 -7.028 -0.892 64.855 1 104.37 ? O7A COA 501 A 1 HETATM 18 O O8A COA . . . I 4 -9.183 -2.036 65.511 1 105.99 ? O8A COA 501 A 1 HETATM 19 O O9A COA . . . I 4 -8.934 0.457 65.85 1 105.63 ? O9A COA 501 A 1 HETATM 20 C C4B COA . . . I 4 -11.085 0.072 62.459 1 168.17 ? C4B COA 501 A 1 HETATM 21 O O4B COA . . . I 4 -11.184 1.21 61.607 1 174.48 ? O4B COA 501 A 1 HETATM 22 C C5B COA . . . I 4 -12.46 -0.256 62.991 1 145.98 ? C5B COA 501 A 1 HETATM 23 O O5B COA . . . I 4 -13.371 -0.076 61.91 1 116.25 ? O5B COA 501 A 1 HETATM 24 P P1A COA . . . I 4 -14.845 -0.712 61.976 1 86.81 ? P1A COA 501 A 1 HETATM 25 O O1A COA . . . I 4 -15.48 -0.761 60.618 1 73.11 ? O1A COA 501 A 1 HETATM 26 O O2A COA . . . I 4 -14.779 -1.902 62.894 1 82.67 ? O2A COA 501 A 1 HETATM 27 O O3A COA . . . I 4 -15.648 0.491 62.622 1 73.87 ? O3A COA 501 A 1 HETATM 28 P P2A COA . . . I 4 -16.826 1.237 61.83 1 67.23 ? P2A COA 501 A 1 HETATM 29 O O4A COA . . . I 4 -17.302 1.986 63.039 1 67.1 ? O4A COA 501 A 1 HETATM 30 O O5A COA . . . I 4 -17.752 0.361 61.023 1 65.1 ? O5A COA 501 A 1 HETATM 31 O O6A COA . . . I 4 -16.202 2.3 60.779 1 65.25 ? O6A COA 501 A 1 HETATM 32 C CBP COA . . . I 4 -16.321 4.674 60.296 1 60.71 ? CBP COA 501 A 1 HETATM 33 C CCP COA . . . I 4 -15.746 3.586 61.201 1 62.85 ? CCP COA 501 A 1 HETATM 34 C CDP COA . . . I 4 -15.464 5.927 60.204 1 58.61 ? CDP COA 501 A 1 HETATM 35 C CEP COA . . . I 4 -16.431 4.164 58.871 1 60.44 ? CEP COA 501 A 1 HETATM 36 C CAP COA . . . I 4 -17.738 4.989 60.772 1 57.18 ? CAP COA 501 A 1 HETATM 37 O OAP COA . . . I 4 -17.876 5.099 62.2 1 55.57 ? OAP COA 501 A 1 HETATM 38 C C9P COA . . . I 4 -18.22 6.259 60.133 1 55.95 ? C9P COA 501 A 1 HETATM 39 O O9P COA . . . I 4 -18.512 6.282 58.961 1 52.65 ? O9P COA 501 A 1 HETATM 40 N N8P COA . . . I 4 -18.235 7.351 60.869 1 56.01 ? N8P COA 501 A 1 HETATM 41 C C7P COA . . . I 4 -18.875 8.564 60.392 1 57.55 ? C7P COA 501 A 1 HETATM 42 C C6P COA . . . I 4 -17.751 9.477 59.931 1 59.44 ? C6P COA 501 A 1 HETATM 43 C C5P COA . . . I 4 -16.655 9.359 60.936 1 62.04 ? C5P COA 501 A 1 HETATM 44 O O5P COA . . . I 4 -16.884 8.983 62.07 1 61.37 ? O5P COA 501 A 1 HETATM 45 N N4P COA . . . I 4 -15.471 9.553 60.393 1 64.81 ? N4P COA 501 A 1 HETATM 46 C C3P COA . . . I 4 -14.257 9.208 61.092 1 66.98 ? C3P COA 501 A 1 HETATM 47 C C2P COA . . . I 4 -14.392 9.443 62.59 1 69.32 ? C2P COA 501 A 1 HETATM 48 S S1P COA . . . I 4 -12.839 9.786 63.466 1 71.76 ? S1P COA 501 A 1 HETATM 49 H H2A COA . . . I 4 -8.719 5.988 59.064 1 113.31 ? H2A COA 501 A 1 HETATM 50 H H61A COA . . . I 4 -11.69 8.738 61.022 1 94.33 ? H61A COA 501 A 1 HETATM 51 H H62A COA . . . I 4 -12.527 7.726 62.21 1 94.33 ? H62A COA 501 A 1 HETATM 52 H H8A COA . . . I 4 -12.173 2.904 63.599 1 127.66 ? H8A COA 501 A 1 HETATM 53 H H1B COA . . . I 4 -9.407 2.11 60.937 1 196.21 ? H1B COA 501 A 1 HETATM 54 H H2B COA . . . I 4 -9.577 2.494 63.859 1 218.55 ? H2B COA 501 A 1 HETATM 55 H HO2A COA . . . I 4 -7.989 1.061 61.955 1 245.16 ? HO2A COA 501 A 1 HETATM 56 H H3B COA . . . I 4 -10.565 0.536 64.45 1 195.81 ? H3B COA 501 A 1 HETATM 57 H H4B COA . . . I 4 -10.725 -0.789 61.878 1 201.92 ? H4B COA 501 A 1 HETATM 58 H H51A COA . . . I 4 -12.489 -1.287 63.348 1 175.3 ? H51A COA 501 A 1 HETATM 59 H H52A COA . . . I 4 -12.719 0.41 63.817 1 175.3 ? H52A COA 501 A 1 HETATM 60 H H121 COA . . . I 4 -16.009 3.765 62.243 1 75.54 ? H121 COA 501 A 1 HETATM 61 H H122 COA . . . I 4 -14.656 3.611 61.134 1 75.54 ? H122 COA 501 A 1 HETATM 62 H H131 COA . . . I 4 -15.571 6.489 61.095 1 70.46 ? H131 COA 501 A 1 HETATM 63 H H132 COA . . . I 4 -14.449 5.646 60.092 1 70.46 ? H132 COA 501 A 1 HETATM 64 H H133 COA . . . I 4 -15.753 6.515 59.372 1 70.46 ? H133 COA 501 A 1 HETATM 65 H H141 COA . . . I 4 -17.101 3.345 58.831 1 72.65 ? H141 COA 501 A 1 HETATM 66 H H142 COA . . . I 4 -15.475 3.852 58.54 1 72.65 ? H142 COA 501 A 1 HETATM 67 H H143 COA . . . I 4 -16.779 4.932 58.233 1 72.65 ? H143 COA 501 A 1 HETATM 68 H H10 COA . . . I 4 -18.389 4.174 60.427 1 68.75 ? H10 COA 501 A 1 HETATM 69 H HO1 COA . . . I 4 -18.079 4.232 62.576 1 66.81 ? HO1 COA 501 A 1 HETATM 70 H HN8 COA . . . I 4 -17.944 7.282 61.828 1 67.34 ? HN8 COA 501 A 1 HETATM 71 H H71 COA . . . I 4 -19.445 9.036 61.195 1 69.19 ? H71 COA 501 A 1 HETATM 72 H H72 COA . . . I 4 -19.549 8.343 59.563 1 69.19 ? H72 COA 501 A 1 HETATM 73 H H61 COA . . . I 4 -18.104 10.509 59.891 1 71.45 ? H61 COA 501 A 1 HETATM 74 H H62 COA . . . I 4 -17.405 9.179 58.939 1 71.45 ? H62 COA 501 A 1 HETATM 75 H HN4 COA . . . I 4 -15.392 9.861 59.435 1 77.9 ? HN4 COA 501 A 1 HETATM 76 H H31 COA . . . I 4 -14.069 8.156 60.886 1 80.5 ? H31 COA 501 A 1 HETATM 77 H H32 COA . . . I 4 -13.437 9.806 60.692 1 80.5 ? H32 COA 501 A 1 HETATM 78 H H21 COA . . . I 4 -15.06 10.289 62.763 1 83.3 ? H21 COA 501 A 1 HETATM 79 H H22 COA . . . I 4 -14.847 8.562 63.046 1 83.3 ? H22 COA 501 A 1 HETATM 80 H HS1 COA . . . I 4 -13.418 10.205 64.587 1 86.24 ? HS1 COA 501 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 80 #