data_6PAV
#
_model_server_result.job_id            '_l4jOnGs2Un3Q7uD_Lnzxg' 
_model_server_result.datetime_utc      '2024-10-10 01:17:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pav 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    6PAV 
#
_exptl.entry_id    6PAV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.66 
_cell.angle_gamma         90 
_cell.entry_id            6PAV 
_cell.length_a            92.361 
_cell.length_b            58.217 
_cell.length_c            154.035 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PAV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 J N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 D ACE 2 1_555 B N LYS 2 D LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale2 D NZ LYS 2 C LYS 3 1_555 L C1 MYR . C MYR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     6PAV 
_atom_sites.fract_transf_matrix[1][1]    0.010827 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000125 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017177 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006492 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 COA B 1 501 501 COA COA . 
F 5 GOL B 1 502 502 GOL GOL . 
G 5 GOL B 1 503 503 GOL GOL . 
H 6 MYR B 1 504 101 MYR MYR . 
I 4 COA A 1 501 501 COA COA . 
J 5 GOL A 1 502 502 GOL GOL . 
K 5 GOL A 1 503 503 GOL GOL . 
L 6 MYR C 1 101 101 MYR MYR . 
M 7 HOH B 1 601 70 HOH HOH . 
M 7 HOH B 2 602 49 HOH HOH . 
M 7 HOH B 3 603 80 HOH HOH . 
M 7 HOH B 4 604 71 HOH HOH . 
M 7 HOH B 5 605 33 HOH HOH . 
M 7 HOH B 6 606 2 HOH HOH . 
M 7 HOH B 7 607 78 HOH HOH . 
M 7 HOH B 8 608 17 HOH HOH . 
M 7 HOH B 9 609 72 HOH HOH . 
M 7 HOH B 10 610 24 HOH HOH . 
M 7 HOH B 11 611 31 HOH HOH . 
M 7 HOH B 12 612 63 HOH HOH . 
M 7 HOH B 13 613 21 HOH HOH . 
M 7 HOH B 14 614 23 HOH HOH . 
M 7 HOH B 15 615 55 HOH HOH . 
M 7 HOH B 16 616 4 HOH HOH . 
M 7 HOH B 17 617 13 HOH HOH . 
M 7 HOH B 18 618 1 HOH HOH . 
M 7 HOH B 19 619 11 HOH HOH . 
M 7 HOH B 20 620 10 HOH HOH . 
M 7 HOH B 21 621 32 HOH HOH . 
M 7 HOH B 22 622 60 HOH HOH . 
M 7 HOH B 23 623 27 HOH HOH . 
M 7 HOH B 24 624 46 HOH HOH . 
M 7 HOH B 25 625 43 HOH HOH . 
M 7 HOH B 26 626 25 HOH HOH . 
M 7 HOH B 27 627 59 HOH HOH . 
M 7 HOH B 28 628 40 HOH HOH . 
M 7 HOH B 29 629 28 HOH HOH . 
M 7 HOH B 30 630 50 HOH HOH . 
M 7 HOH B 31 631 64 HOH HOH . 
M 7 HOH B 32 632 83 HOH HOH . 
M 7 HOH B 33 633 77 HOH HOH . 
M 7 HOH B 34 634 48 HOH HOH . 
M 7 HOH B 35 635 62 HOH HOH . 
N 7 HOH D 1 201 8 HOH HOH . 
O 7 HOH A 1 601 45 HOH HOH . 
O 7 HOH A 2 602 82 HOH HOH . 
O 7 HOH A 3 603 36 HOH HOH . 
O 7 HOH A 4 604 57 HOH HOH . 
O 7 HOH A 5 605 68 HOH HOH . 
O 7 HOH A 6 606 73 HOH HOH . 
O 7 HOH A 7 607 74 HOH HOH . 
O 7 HOH A 8 608 35 HOH HOH . 
O 7 HOH A 9 609 53 HOH HOH . 
O 7 HOH A 10 610 51 HOH HOH . 
O 7 HOH A 11 611 37 HOH HOH . 
O 7 HOH A 12 612 69 HOH HOH . 
O 7 HOH A 13 613 6 HOH HOH . 
O 7 HOH A 14 614 7 HOH HOH . 
O 7 HOH A 15 615 52 HOH HOH . 
O 7 HOH A 16 616 15 HOH HOH . 
O 7 HOH A 17 617 39 HOH HOH . 
O 7 HOH A 18 618 3 HOH HOH . 
O 7 HOH A 19 619 67 HOH HOH . 
O 7 HOH A 20 620 56 HOH HOH . 
O 7 HOH A 21 621 79 HOH HOH . 
O 7 HOH A 22 622 41 HOH HOH . 
O 7 HOH A 23 623 22 HOH HOH . 
O 7 HOH A 24 624 16 HOH HOH . 
O 7 HOH A 25 625 34 HOH HOH . 
O 7 HOH A 26 626 42 HOH HOH . 
O 7 HOH A 27 627 18 HOH HOH . 
O 7 HOH A 28 628 20 HOH HOH . 
O 7 HOH A 29 629 30 HOH HOH . 
O 7 HOH A 30 630 5 HOH HOH . 
O 7 HOH A 31 631 38 HOH HOH . 
O 7 HOH A 32 632 47 HOH HOH . 
O 7 HOH A 33 633 14 HOH HOH . 
O 7 HOH A 34 634 61 HOH HOH . 
O 7 HOH A 35 635 81 HOH HOH . 
O 7 HOH A 36 636 12 HOH HOH . 
O 7 HOH A 37 637 26 HOH HOH . 
O 7 HOH A 38 638 58 HOH HOH . 
O 7 HOH A 39 639 44 HOH HOH . 
O 7 HOH A 40 640 19 HOH HOH . 
O 7 HOH A 41 641 9 HOH HOH . 
O 7 HOH A 42 642 65 HOH HOH . 
O 7 HOH A 43 643 84 HOH HOH . 
O 7 HOH A 44 644 76 HOH HOH . 
O 7 HOH A 45 645 29 HOH HOH . 
P 7 HOH C 1 201 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 5 20.427 19.004 29.888 1 54.8 ? C1 GOL 502 B 1 
HETATM 2 O O1 GOL . . . F 5 20.339 18.277 28.699 1 53.23 ? O1 GOL 502 B 1 
HETATM 3 C C2 GOL . . . F 5 21.566 18.381 30.702 1 56.8 ? C2 GOL 502 B 1 
HETATM 4 O O2 GOL . . . F 5 21.836 19.089 31.855 1 56.49 ? O2 GOL 502 B 1 
HETATM 5 C C3 GOL . . . F 5 22.743 18.318 29.755 1 60.55 ? C3 GOL 502 B 1 
HETATM 6 O O3 GOL . . . F 5 23.64 17.397 30.309 1 63.12 ? O3 GOL 502 B 1 
HETATM 7 H H2 GOL . . . F 5 21.32 17.49 30.996 1 68.29 ? H2 GOL 502 B 1 
HETATM 8 H H31 GOL . . . F 5 23.111 19.207 29.632 1 72.79 ? H31 GOL 502 B 1 
HETATM 9 H H32 GOL . . . F 5 22.469 18.034 28.898 1 72.79 ? H32 GOL 502 B 1 
HETATM 10 H HO3 GOL . . . F 5 23.796 17.655 31.104 1 75.87 ? HO3 GOL 502 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#