data_6PB3 # _model_server_result.job_id PArmxffdFpgG9XSeSeUBQA _model_server_result.datetime_utc '2024-10-10 17:18:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6PB3 # _exptl.entry_id 6PB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PB3 _cell.length_a 100.436 _cell.length_b 100.436 _cell.length_c 48.86 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 41 A LYS 41 1_555 A N MSE 42 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C MSE 42 A MSE 42 1_555 A N LEU 43 A LEU 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C GLU 123 A GLU 123 1_555 A N MSE 124 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 124 A MSE 124 1_555 A N THR 125 A THR 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C ILE 200 A ILE 200 1_555 A N MSE 201 A MSE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale6 A C MSE 201 A MSE 201 1_555 A N CYS 202 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C ALA 300 A ALA 300 1_555 A N MSE 301 A MSE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 301 A MSE 301 1_555 A N ALA 302 A ALA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PB3 _atom_sites.fract_transf_matrix[1][1] 0.009957 _atom_sites.fract_transf_matrix[1][2] 0.005748 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 3 HOH A 1 501 53 HOH HOH . C 3 HOH A 2 502 30 HOH HOH . C 3 HOH A 3 503 25 HOH HOH . C 3 HOH A 4 504 16 HOH HOH . C 3 HOH A 5 505 24 HOH HOH . C 3 HOH A 6 506 14 HOH HOH . C 3 HOH A 7 507 9 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 11 HOH HOH . C 3 HOH A 10 510 6 HOH HOH . C 3 HOH A 11 511 4 HOH HOH . C 3 HOH A 12 512 2 HOH HOH . C 3 HOH A 13 513 21 HOH HOH . C 3 HOH A 14 514 13 HOH HOH . C 3 HOH A 15 515 5 HOH HOH . C 3 HOH A 16 516 3 HOH HOH . C 3 HOH A 17 517 29 HOH HOH . C 3 HOH A 18 518 50 HOH HOH . C 3 HOH A 19 519 55 HOH HOH . C 3 HOH A 20 520 10 HOH HOH . C 3 HOH A 21 521 1 HOH HOH . C 3 HOH A 22 522 18 HOH HOH . C 3 HOH A 23 523 7 HOH HOH . C 3 HOH A 24 524 49 HOH HOH . C 3 HOH A 25 525 36 HOH HOH . C 3 HOH A 26 526 54 HOH HOH . C 3 HOH A 27 527 20 HOH HOH . C 3 HOH A 28 528 33 HOH HOH . C 3 HOH A 29 529 12 HOH HOH . C 3 HOH A 30 530 37 HOH HOH . C 3 HOH A 31 531 43 HOH HOH . C 3 HOH A 32 532 27 HOH HOH . C 3 HOH A 33 533 17 HOH HOH . C 3 HOH A 34 534 31 HOH HOH . C 3 HOH A 35 535 52 HOH HOH . C 3 HOH A 36 536 32 HOH HOH . C 3 HOH A 37 537 34 HOH HOH . C 3 HOH A 38 538 23 HOH HOH . C 3 HOH A 39 539 51 HOH HOH . C 3 HOH A 40 540 19 HOH HOH . C 3 HOH A 41 541 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 25.798 6.362 -14.27 1 53.42 ? S SO4 401 A 1 HETATM 2 O O1 SO4 . . . B 2 24.446 6.668 -14.746 1 56.76 ? O1 SO4 401 A 1 HETATM 3 O O2 SO4 . . . B 2 26.493 5.689 -15.361 1 56.76 ? O2 SO4 401 A 1 HETATM 4 O O3 SO4 . . . B 2 26.506 7.622 -13.946 1 57.44 ? O3 SO4 401 A 1 HETATM 5 O O4 SO4 . . . B 2 25.742 5.577 -13.039 1 49.14 ? O4 SO4 401 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #